Wall clock time and date at job start Sat Apr 11 2020 07:10:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42906 * 109.47460 * 2 1 4 4 C 1.42897 * 114.00245 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47205 * 330.00259 * 4 3 2 6 6 C 1.53003 * 109.46814 * 90.00057 * 4 3 2 7 7 C 1.50697 * 109.47116 * 210.00161 * 4 3 2 8 8 O 1.21276 * 119.99994 * 0.02562 * 7 4 3 9 9 N 1.34775 * 119.99812 * 180.02562 * 7 4 3 10 10 C 1.46503 * 120.00252 * 179.97438 * 9 7 4 11 11 C 1.52994 * 109.47687 * 175.02698 * 10 9 7 12 12 H 1.09000 * 109.87283 * 306.41741 * 11 10 9 13 13 C 1.54323 * 109.88084 * 67.58908 * 11 10 9 14 14 C 1.55160 * 102.94053 * 141.61131 * 13 11 10 15 15 C 1.54913 * 101.58220 * 324.50096 * 14 13 11 16 16 N 1.47019 * 109.88749 * 185.40045 * 11 10 9 17 17 C 1.34785 * 125.64743 * 61.67555 * 16 11 10 18 18 O 1.21285 * 119.99368 * 5.08789 * 17 16 11 19 19 C 1.50695 * 120.00112 * 185.08677 * 17 16 11 20 20 S 1.80999 * 109.47156 * 179.97438 * 19 17 16 21 21 C 1.76202 * 100.00051 * 180.02562 * 20 19 17 22 22 H 1.07998 * 119.99913 * 359.97438 * 21 20 19 23 23 C 1.38795 * 119.99861 * 180.02562 * 21 20 19 24 24 N 1.31630 * 120.00172 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99878 * 180.02562 * 23 21 20 26 26 H 1.48502 * 109.47092 * 359.97438 * 25 23 21 27 27 H 1.48495 * 109.47237 * 119.99820 * 25 23 21 28 28 H 1.48506 * 109.47105 * 240.00085 * 25 23 21 29 29 H 1.08997 * 109.47339 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46711 * 300.00059 * 1 2 3 31 31 H 1.08998 * 109.47081 * 59.99515 * 1 2 3 32 32 H 1.08997 * 109.47231 * 239.99993 * 2 1 3 33 33 H 1.09003 * 109.47496 * 120.00242 * 2 1 3 34 34 H 1.09003 * 109.47069 * 60.00120 * 6 4 3 35 35 H 1.09002 * 109.46851 * 179.97438 * 6 4 3 36 36 H 1.09001 * 109.47261 * 299.99935 * 6 4 3 37 37 H 0.96998 * 120.00387 * 359.97438 * 9 7 4 38 38 H 1.09001 * 109.47153 * 295.02993 * 10 9 7 39 39 H 1.09002 * 109.46836 * 55.02195 * 10 9 7 40 40 H 1.08994 * 110.72493 * 259.97195 * 13 11 10 41 41 H 1.08996 * 110.71820 * 23.25325 * 13 11 10 42 42 H 1.08998 * 111.00846 * 206.41998 * 14 13 11 43 43 H 1.09009 * 111.03515 * 82.58724 * 14 13 11 44 44 H 1.08998 * 110.36556 * 278.16703 * 15 14 13 45 45 H 1.09003 * 110.36188 * 155.84447 * 15 14 13 46 46 H 1.08992 * 109.47402 * 300.00567 * 19 17 16 47 47 H 1.09009 * 109.47166 * 60.00190 * 19 17 16 48 48 H 0.97007 * 119.99972 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8632 0.6016 0.5147 6 6 3.9399 1.5002 -1.4418 7 6 3.8342 2.7264 0.7110 8 8 2.9854 3.4599 1.1719 9 7 5.1383 3.0439 0.8342 10 6 5.5304 4.2753 1.5243 11 6 7.0553 4.3352 1.6337 12 1 7.4299 3.4216 2.0953 13 6 7.6755 4.5111 0.2316 14 6 8.8554 5.4841 0.4931 15 6 8.2657 6.3988 1.5956 16 7 7.4537 5.5006 2.4365 17 6 7.1305 5.7125 3.7278 18 8 6.5335 4.8604 4.3511 19 6 7.5109 7.0081 4.3969 20 16 6.9413 6.9898 6.1149 21 6 7.5020 8.5755 6.6400 22 1 8.0255 9.2193 5.9488 23 6 7.2718 8.9967 7.9423 24 7 6.6341 8.2118 8.7849 25 14 7.8656 10.6782 8.4989 26 1 8.5486 11.3604 7.3704 27 1 6.7046 11.4920 8.9402 28 1 8.8162 10.5185 9.6285 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8899 33 1 1.8934 -0.5139 0.8900 34 1 3.5076 2.3587 -1.9559 35 1 5.0265 1.5867 -1.4413 36 1 3.6481 0.5842 -1.9556 37 1 5.8172 2.4571 0.4659 38 1 5.1724 5.1372 0.9612 39 1 5.0937 4.2869 2.5229 40 1 8.0396 3.5578 -0.1515 41 1 6.9552 4.9544 -0.4559 42 1 9.0955 6.0569 -0.4026 43 1 9.7315 4.9477 0.8578 44 1 7.6392 7.1724 1.1517 45 1 9.0659 6.8484 2.1836 46 1 8.5943 7.1243 4.3742 47 1 7.0450 7.8402 3.8689 48 1 6.4729 8.5064 9.6950 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001531943021.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:10:59 Heat of formation + Delta-G solvation = -120.919398 kcal Electronic energy + Delta-G solvation = -27732.834303 eV Core-core repulsion = 23721.092311 eV Total energy + Delta-G solvation = -4011.741992 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.46815 -39.77076 -38.02241 -37.27813 -34.89465 -32.88117 -32.42250 -31.84430 -30.85951 -29.95568 -28.58247 -25.99731 -25.48732 -24.37449 -23.06102 -22.72727 -21.32190 -20.66598 -19.10982 -17.81352 -17.54356 -17.34097 -16.93432 -16.36493 -16.07898 -15.51044 -15.17873 -14.94940 -14.79652 -14.63115 -14.39457 -13.98216 -13.85146 -13.60024 -13.48137 -13.29671 -13.02367 -12.87896 -12.62067 -12.59669 -12.50446 -12.33775 -12.32560 -11.77245 -11.70204 -11.50870 -11.42091 -11.14772 -11.06831 -11.04658 -11.00685 -10.75170 -10.23421 -9.80424 -9.70587 -9.45903 -9.18153 -9.06643 -8.61499 -8.22235 -6.49448 -6.20831 -3.91533 2.44965 2.48747 2.94187 3.01495 3.22329 3.26281 3.31676 3.53665 3.68447 4.18318 4.23017 4.26709 4.37648 4.49350 4.54516 4.61092 4.73242 4.85007 4.86955 5.00116 5.01691 5.02222 5.06919 5.13200 5.14359 5.25326 5.38204 5.39212 5.47234 5.52521 5.54530 5.56356 5.63388 5.65331 5.79153 5.82694 5.86442 5.91140 5.96979 6.13192 6.16218 6.43676 6.74352 7.28705 7.58997 7.61124 8.07970 8.36140 8.50591 9.24445 10.86631 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014033 B = 0.002184 C = 0.001937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.821959 B =12817.185634 C =14452.855993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.357 6.357 4 C 0.072 3.928 5 H 0.087 0.913 6 C -0.170 4.170 7 C 0.512 3.488 8 O -0.511 6.511 9 N -0.724 5.724 10 C 0.109 3.891 11 C 0.130 3.870 12 H 0.081 0.919 13 C -0.130 4.130 14 C -0.131 4.131 15 C 0.100 3.900 16 N -0.621 5.621 17 C 0.549 3.451 18 O -0.509 6.509 19 C -0.147 4.147 20 S -0.060 6.060 21 C -0.534 4.534 22 H 0.073 0.927 23 C 0.073 3.927 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.272 1.272 27 H -0.280 1.280 28 H -0.280 1.280 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.063 0.937 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.069 0.931 37 H 0.397 0.603 38 H 0.069 0.931 39 H 0.088 0.912 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.069 0.931 45 H 0.081 0.919 46 H 0.089 0.911 47 H 0.090 0.910 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.786 -15.273 -25.785 29.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.010 3.990 5 H 0.105 0.895 6 C -0.227 4.227 7 C 0.296 3.704 8 O -0.384 6.384 9 N -0.378 5.378 10 C -0.016 4.016 11 C 0.025 3.975 12 H 0.099 0.901 13 C -0.168 4.168 14 C -0.170 4.170 15 C -0.023 4.023 16 N -0.359 5.359 17 C 0.337 3.663 18 O -0.382 6.382 19 C -0.297 4.297 20 S 0.167 5.833 21 C -0.683 4.683 22 H 0.091 0.909 23 C -0.136 4.136 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.196 1.196 27 H -0.205 1.205 28 H -0.206 1.206 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.088 0.912 37 H 0.231 0.769 38 H 0.087 0.913 39 H 0.106 0.894 40 H 0.100 0.900 41 H 0.099 0.901 42 H 0.103 0.897 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.099 0.901 46 H 0.107 0.893 47 H 0.108 0.892 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.974 -15.827 -24.211 28.942 hybrid contribution 1.624 1.569 -0.520 2.318 sum 0.651 -14.258 -24.731 28.554 Atomic orbital electron populations 1.21731 0.93338 1.02245 1.03554 1.22603 0.96093 0.83436 1.00056 1.88072 1.18185 1.26414 1.94894 1.21860 0.84028 0.96514 0.96568 0.89502 1.22242 1.01490 1.03833 0.95171 1.20356 0.82533 0.87348 0.80188 1.90774 1.49990 1.51120 1.46546 1.45744 1.07011 1.25504 1.59582 1.21768 0.94503 0.86167 0.99119 1.21603 0.93230 0.91015 0.91623 0.90105 1.22777 0.98027 1.00686 0.95347 1.22773 0.97846 0.97611 0.98721 1.22326 0.94726 0.93043 0.92232 1.48509 1.54240 1.22609 1.10537 1.20108 0.78237 0.88739 0.79169 1.90725 1.39742 1.45378 1.62383 1.23517 1.04669 0.96346 1.05196 1.85440 1.75344 1.23996 0.98548 1.22892 1.43184 1.02429 0.99763 0.90865 1.25000 0.94846 0.98269 0.95526 1.70031 1.38474 1.36186 1.05524 0.86111 0.78506 0.82212 0.78621 1.19616 1.20544 1.20580 0.90991 0.91482 0.91770 0.93255 0.93124 0.91001 0.90977 0.91224 0.76876 0.91315 0.89402 0.90002 0.90123 0.89719 0.90392 0.91235 0.90053 0.89286 0.89161 0.92223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 10.28 37.16 0.38 -0.71 16 2 C 0.05 0.43 6.47 37.16 0.24 0.67 16 3 O -0.36 -4.12 9.52 -55.14 -0.52 -4.65 16 4 C 0.07 0.65 3.14 -27.88 -0.09 0.57 16 5 H 0.09 0.58 7.79 -51.93 -0.40 0.18 16 6 C -0.17 -1.00 9.42 37.16 0.35 -0.65 16 7 C 0.51 6.54 7.23 -10.99 -0.08 6.46 16 8 O -0.51 -9.45 16.50 -14.35 -0.24 -9.69 16 9 N -0.72 -7.27 5.31 -60.30 -0.32 -7.59 16 10 C 0.11 1.41 5.08 -4.04 -0.02 1.39 16 11 C 0.13 1.42 2.92 -66.96 -0.20 1.23 16 12 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 13 C -0.13 -0.87 6.12 -24.90 -0.15 -1.02 16 14 C -0.13 -0.88 7.09 -24.58 -0.17 -1.05 16 15 C 0.10 0.99 6.65 -2.53 -0.02 0.97 16 16 N -0.62 -8.57 3.06 -163.02 -0.50 -9.07 16 17 C 0.55 10.50 7.59 -10.98 -0.08 10.42 16 18 O -0.51 -11.74 15.04 5.55 0.08 -11.65 16 19 C -0.15 -3.02 5.25 36.00 0.19 -2.83 16 20 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 21 C -0.53 -15.35 9.50 30.94 0.29 -15.05 16 22 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 23 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 24 N -0.87 -26.43 13.22 55.49 0.73 -25.70 16 25 Si 0.92 21.59 29.55 -169.99 -5.02 16.56 16 26 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 27 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 28 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.28 7.87 -51.93 -0.41 -0.13 16 33 H 0.05 0.36 8.08 -51.93 -0.42 -0.06 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.26 7.56 -51.93 -0.39 -0.14 16 36 H 0.07 0.32 7.87 -51.93 -0.41 -0.09 16 37 H 0.40 2.42 7.69 -40.82 -0.31 2.11 16 38 H 0.07 0.92 8.01 -51.93 -0.42 0.50 16 39 H 0.09 1.57 6.88 -51.93 -0.36 1.21 16 40 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.08 0.51 7.76 -51.93 -0.40 0.11 16 42 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 43 H 0.08 0.51 8.14 -51.92 -0.42 0.09 16 44 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.08 0.80 7.51 -51.93 -0.39 0.41 16 46 H 0.09 1.68 7.76 -51.92 -0.40 1.27 16 47 H 0.09 1.74 8.14 -51.91 -0.42 1.32 16 48 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 408.64 15.07 6.16 6.16 Total: -1.00 -39.16 408.64 -9.38 -48.54 By element: Atomic # 1 Polarization: 6.65 SS G_CDS: -8.09 Total: -1.44 kcal Atomic # 6 Polarization: 1.84 SS G_CDS: 0.55 Total: 2.39 kcal Atomic # 7 Polarization: -42.27 SS G_CDS: -0.09 Total: -42.35 kcal Atomic # 8 Polarization: -25.31 SS G_CDS: -0.68 Total: -25.99 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -39.16 -9.38 -48.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001531943021.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.384 kcal (2) G-P(sol) polarization free energy of solvation -39.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds