Wall clock time and date at job start Sat Apr 11 2020 07:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42897 * 109.46867 * 2 1 4 4 C 1.42907 * 113.99999 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47013 * 29.99813 * 4 3 2 6 6 C 1.52996 * 109.47272 * 270.00124 * 4 3 2 7 7 C 1.50703 * 109.47198 * 149.99881 * 4 3 2 8 8 O 1.21283 * 119.99926 * 12.49710 * 7 4 3 9 9 N 1.34775 * 119.99740 * 192.50252 * 7 4 3 10 10 C 1.47424 * 125.64714 * 175.02846 * 9 7 4 11 11 C 1.54911 * 104.83321 * 204.15839 * 10 9 7 12 12 C 1.55154 * 101.58019 * 322.99027 * 11 10 9 13 13 C 1.53002 * 110.87419 * 153.93525 * 12 11 10 14 14 N 1.46506 * 110.72142 * 277.13795 * 12 11 10 15 15 C 1.34774 * 119.99532 * 293.52444 * 14 12 11 16 16 O 1.21279 * 120.00286 * 359.97438 * 15 14 12 17 17 C 1.50700 * 119.99595 * 180.02562 * 15 14 12 18 18 S 1.81001 * 109.47024 * 179.97438 * 17 15 14 19 19 C 1.76198 * 99.99853 * 179.97438 * 18 17 15 20 20 H 1.08003 * 120.00578 * 0.02562 * 19 18 17 21 21 C 1.38802 * 119.99917 * 179.97438 * 19 18 17 22 22 N 1.31625 * 120.00144 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00097 * 180.02562 * 21 19 18 24 24 H 1.48493 * 109.47190 * 180.02562 * 23 21 19 25 25 H 1.48506 * 109.47058 * 300.00549 * 23 21 19 26 26 H 1.48497 * 109.47044 * 60.00062 * 23 21 19 27 27 C 1.47019 * 125.64798 * 355.06236 * 9 7 4 28 28 H 1.09003 * 109.46876 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47228 * 300.00137 * 1 2 3 30 30 H 1.08998 * 109.46750 * 60.00317 * 1 2 3 31 31 H 1.08996 * 109.47228 * 239.99863 * 2 1 3 32 32 H 1.08998 * 109.46750 * 119.99683 * 2 1 3 33 33 H 1.09008 * 109.46940 * 304.74601 * 6 4 3 34 34 H 1.09003 * 109.47026 * 64.74081 * 6 4 3 35 35 H 1.08994 * 109.47216 * 184.74400 * 6 4 3 36 36 H 1.09001 * 110.36581 * 323.00030 * 10 9 7 37 37 H 1.09007 * 110.36638 * 85.21054 * 10 9 7 38 38 H 1.08991 * 111.00349 * 204.91794 * 11 10 9 39 39 H 1.08999 * 111.00109 * 81.06325 * 11 10 9 40 40 H 1.09002 * 109.47243 * 183.95124 * 13 12 11 41 41 H 1.09003 * 109.46883 * 303.95309 * 13 12 11 42 42 H 1.09002 * 109.46894 * 63.94294 * 13 12 11 43 43 H 0.96993 * 119.99916 * 113.52026 * 14 12 11 44 44 H 1.08997 * 109.47421 * 59.99541 * 17 15 14 45 45 H 1.09006 * 109.47096 * 299.99329 * 17 15 14 46 46 H 0.96999 * 120.00396 * 179.97438 * 22 21 19 47 47 H 1.08993 * 109.88553 * 59.49555 * 27 9 7 48 48 H 1.09004 * 109.88377 * 298.32519 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4602 0.0006 5 1 3.8636 0.6016 -0.5129 6 6 3.9387 1.5006 1.4432 7 6 3.8348 2.7264 -0.7099 8 8 3.0011 3.5679 -0.9703 9 7 5.1224 2.9235 -1.0559 10 6 5.6367 4.0605 -1.8408 11 6 6.9489 3.5405 -2.4791 12 6 7.5169 2.6505 -1.3423 13 6 8.4213 1.5539 -1.9086 14 7 8.2417 3.4623 -0.3614 15 6 9.3839 4.0847 -0.7141 16 8 9.8119 3.9724 -1.8433 17 6 10.1297 4.9192 0.2950 18 16 11.6111 5.6172 -0.4762 19 6 12.2698 6.5185 0.8870 20 1 11.7564 6.5125 1.8372 21 6 13.4493 7.2353 0.7401 22 7 14.0754 7.2422 -0.4177 23 14 14.1482 8.1902 2.1855 24 1 15.4044 8.8654 1.7718 25 1 13.1624 9.2084 2.6292 26 1 14.4329 7.2564 3.3045 27 6 6.2465 2.0399 -0.7137 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.4420 2.3085 1.9807 34 1 3.7206 0.5511 1.9320 35 1 5.0153 1.6712 1.4448 36 1 4.9229 4.3405 -2.6155 37 1 5.8406 4.9101 -1.1890 38 1 7.6260 4.3639 -2.7060 39 1 6.7419 2.9497 -3.3714 40 1 8.7508 0.9012 -1.1002 41 1 7.8677 0.9703 -2.6441 42 1 9.2896 2.0092 -2.3850 43 1 7.8995 3.5518 0.5417 44 1 10.4202 4.2945 1.1396 45 1 9.4868 5.7271 0.6447 46 1 14.8995 7.7434 -0.5205 47 1 6.0729 1.0442 -1.1217 48 1 6.3584 1.9848 0.3691 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001536754893.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:11 Heat of formation + Delta-G solvation = -114.049166 kcal Electronic energy + Delta-G solvation = -28185.080967 eV Core-core repulsion = 24173.636890 eV Total energy + Delta-G solvation = -4011.444077 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96179 -39.68188 -38.28936 -37.31776 -34.27288 -33.03123 -32.45988 -31.76563 -30.82624 -29.64754 -28.63845 -26.96940 -25.51317 -25.08911 -23.31787 -22.56876 -21.54274 -19.98194 -19.44065 -17.98678 -17.64339 -17.28844 -16.85335 -16.34938 -16.13584 -15.65285 -15.39190 -15.07048 -14.83197 -14.47951 -14.16622 -14.01225 -13.71146 -13.41516 -13.28665 -13.25352 -13.17456 -13.01609 -12.82298 -12.59454 -12.47476 -12.43249 -12.35354 -12.00563 -11.82491 -11.58626 -11.49031 -11.35970 -11.09239 -11.06413 -10.99214 -10.79639 -10.33979 -9.86064 -9.80602 -9.35120 -9.10023 -9.02383 -8.99035 -8.28922 -6.53777 -6.24809 -3.95646 2.27402 2.32189 2.91141 2.97542 3.21406 3.24755 3.27505 3.37019 3.60909 3.98876 4.00627 4.17612 4.36145 4.42816 4.48883 4.62926 4.67419 4.77008 4.82555 4.90210 4.93288 5.04790 5.05296 5.10552 5.12648 5.19635 5.31525 5.38774 5.47209 5.51824 5.55236 5.62163 5.64995 5.67618 5.71749 5.80492 5.83103 5.86080 6.00775 6.08894 6.25143 6.57640 6.65049 7.12302 7.56095 7.59518 7.84731 8.31770 8.51188 9.20702 10.82476 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022709 B = 0.002004 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.717957 B =13967.288811 C =14439.897538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.076 3.924 5 H 0.084 0.916 6 C -0.174 4.174 7 C 0.531 3.469 8 O -0.516 6.516 9 N -0.618 5.618 10 C 0.108 3.892 11 C -0.137 4.137 12 C 0.169 3.831 13 C -0.159 4.159 14 N -0.729 5.729 15 C 0.537 3.463 16 O -0.510 6.510 17 C -0.155 4.155 18 S -0.057 6.057 19 C -0.537 4.537 20 H 0.072 0.928 21 C 0.075 3.925 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.283 1.283 25 H -0.274 1.274 26 H -0.274 1.274 27 C 0.094 3.906 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.065 0.935 31 H 0.050 0.950 32 H 0.051 0.949 33 H 0.073 0.927 34 H 0.071 0.929 35 H 0.074 0.926 36 H 0.080 0.920 37 H 0.072 0.928 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.059 0.941 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.398 0.602 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.085 0.915 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.788 -17.672 1.626 28.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.015 3.985 5 H 0.102 0.898 6 C -0.232 4.232 7 C 0.318 3.682 8 O -0.390 6.390 9 N -0.355 5.355 10 C -0.014 4.014 11 C -0.176 4.176 12 C 0.082 3.918 13 C -0.217 4.217 14 N -0.384 5.384 15 C 0.324 3.676 16 O -0.384 6.384 17 C -0.306 4.306 18 S 0.169 5.831 19 C -0.686 4.686 20 H 0.090 0.910 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.208 1.208 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.029 4.029 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.120 0.880 39 H 0.103 0.897 40 H 0.078 0.922 41 H 0.082 0.918 42 H 0.112 0.888 43 H 0.233 0.767 44 H 0.107 0.893 45 H 0.107 0.893 46 H 0.079 0.921 47 H 0.103 0.897 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.606 -17.186 -0.487 27.612 hybrid contribution 0.027 0.510 2.799 2.845 sum -21.579 -16.676 2.312 27.370 Atomic orbital electron populations 1.21732 0.93300 1.02293 1.03500 1.22609 0.96075 0.83396 1.00142 1.88066 1.18223 1.26455 1.94952 1.21819 0.83800 0.96084 0.96828 0.89833 1.22299 1.02087 1.03945 0.94861 1.20037 0.80685 0.88287 0.79206 1.90741 1.49538 1.45072 1.53653 1.48459 1.06017 1.25901 1.55092 1.22314 0.95277 0.88823 0.94952 1.23233 0.95709 1.01313 0.97386 1.21109 0.90028 0.91460 0.89204 1.22149 1.01416 0.96916 1.01239 1.46101 1.25737 1.52221 1.14384 1.20262 0.79577 0.78721 0.89047 1.90662 1.66382 1.60493 1.20826 1.23554 1.03994 1.01605 1.01433 1.85358 1.18903 1.61258 1.17533 1.22825 1.11918 1.35448 0.98363 0.91001 1.24981 0.95755 0.96058 0.96696 1.69996 1.17171 1.39872 1.23215 0.86235 0.78298 0.79666 0.81375 1.20790 1.19934 1.19945 1.22502 0.85469 0.94374 1.00557 0.90936 0.91674 0.91638 0.93213 0.93093 0.90773 0.91035 0.90693 0.90154 0.91006 0.87965 0.89657 0.92184 0.91774 0.88814 0.76727 0.89256 0.89273 0.92100 0.89720 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 10.28 37.16 0.38 -0.52 16 2 C 0.05 0.36 6.47 37.16 0.24 0.60 16 3 O -0.36 -3.74 9.55 -54.82 -0.52 -4.26 16 4 C 0.08 0.65 2.53 -27.88 -0.07 0.58 16 5 H 0.08 0.50 7.49 -51.93 -0.39 0.12 16 6 C -0.17 -1.14 9.44 37.16 0.35 -0.79 16 7 C 0.53 6.21 7.17 -10.98 -0.08 6.13 16 8 O -0.52 -8.39 16.84 -14.04 -0.24 -8.63 16 9 N -0.62 -6.04 3.33 -170.51 -0.57 -6.60 16 10 C 0.11 1.16 6.87 -2.53 -0.02 1.14 16 11 C -0.14 -1.46 5.94 -24.58 -0.15 -1.60 16 12 C 0.17 1.64 0.80 -129.98 -0.10 1.54 16 13 C -0.16 -1.57 8.37 37.16 0.31 -1.26 16 14 N -0.73 -8.28 5.14 -45.91 -0.24 -8.52 16 15 C 0.54 8.81 7.19 -10.99 -0.08 8.73 16 16 O -0.51 -10.02 12.68 5.56 0.07 -9.95 16 17 C -0.16 -2.91 6.16 36.01 0.22 -2.69 16 18 S -0.06 -1.48 20.57 -107.50 -2.21 -3.69 16 19 C -0.54 -14.94 9.50 30.94 0.29 -14.65 16 20 H 0.07 1.89 7.80 -52.48 -0.41 1.48 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.69 13.22 55.49 0.73 -24.95 16 23 Si 0.92 21.09 29.55 -169.99 -5.02 16.06 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 27 C 0.09 0.68 5.33 -3.06 -0.02 0.67 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.28 8.09 -51.93 -0.42 -0.14 16 32 H 0.05 0.26 7.98 -51.93 -0.41 -0.16 16 33 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 34 H 0.07 0.35 7.98 -51.93 -0.41 -0.07 16 35 H 0.07 0.40 5.52 -51.93 -0.29 0.11 16 36 H 0.08 0.90 8.09 -51.93 -0.42 0.48 16 37 H 0.07 0.82 8.14 -51.92 -0.42 0.40 16 38 H 0.10 1.35 6.81 -51.93 -0.35 1.00 16 39 H 0.08 0.80 8.05 -51.93 -0.42 0.39 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 1.27 6.03 -51.93 -0.31 0.95 16 43 H 0.40 3.58 8.29 -40.82 -0.34 3.24 16 44 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 45 H 0.09 1.57 8.14 -51.91 -0.42 1.15 16 46 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 47 H 0.08 0.45 7.61 -51.93 -0.40 0.06 16 48 H 0.08 0.45 5.65 -51.93 -0.29 0.16 16 LS Contribution 400.73 15.07 6.04 6.04 Total: -1.00 -35.91 400.73 -8.57 -44.48 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -7.80 Total: 0.14 kcal Atomic # 6 Polarization: -1.31 SS G_CDS: 1.19 Total: -0.12 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.07 Total: -40.07 kcal Atomic # 8 Polarization: -22.15 SS G_CDS: -0.69 Total: -22.84 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: -1.48 SS G_CDS: -2.21 Total: -3.69 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -35.91 -8.57 -44.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001536754893.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.570 kcal (2) G-P(sol) polarization free energy of solvation -35.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds