Wall clock time and date at job start Sat Apr 11 2020 07:11:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34111 * 125.16134 * 2 1 4 4 C 1.38025 * 107.88520 * 180.11581 * 3 2 1 5 5 C 1.47236 * 126.81101 * 179.87139 * 4 3 2 6 6 O 1.21628 * 120.00075 * 179.68332 * 5 4 3 7 7 N 1.34777 * 120.00260 * 359.68712 * 5 4 3 8 8 C 1.46506 * 119.99873 * 180.02562 * 7 5 4 9 9 C 1.53002 * 109.47035 * 179.97438 * 8 7 5 10 10 H 1.08999 * 109.47369 * 64.99599 * 9 8 7 11 11 N 1.46501 * 109.46932 * 304.99709 * 9 8 7 12 12 C 1.36940 * 119.99958 * 154.99652 * 11 9 8 13 13 H 1.08000 * 119.99617 * 0.02562 * 12 11 9 14 14 C 1.38814 * 119.99883 * 179.97438 * 12 11 9 15 15 N 1.31616 * 119.99993 * 180.02562 * 14 12 11 16 16 Si 1.86797 * 120.00132 * 0.02562 * 14 12 11 17 17 H 1.48496 * 109.47488 * 89.99413 * 16 14 12 18 18 H 1.48501 * 109.47290 * 209.99850 * 16 14 12 19 19 H 1.48507 * 109.46941 * 329.99439 * 16 14 12 20 20 C 1.52999 * 109.46954 * 184.99888 * 9 8 7 21 21 C 1.53001 * 117.49597 * 248.74464 * 20 9 8 22 22 C 1.53001 * 117.49395 * 180.08482 * 20 9 8 23 23 C 1.46591 * 106.37101 * 359.60889 * 4 3 2 24 24 C 1.48316 * 126.51413 * 180.27787 * 23 4 3 25 25 C 1.46746 * 127.11483 * 144.99957 * 24 23 4 26 26 C 1.34357 * 106.01951 * 179.97438 * 25 24 23 27 27 O 1.34161 * 109.00330 * 359.97438 * 26 25 24 28 28 C 1.34077 * 110.75785 * 359.76397 * 27 26 25 29 29 N 1.31364 * 106.96703 * 0.24104 * 23 4 3 30 30 H 1.08995 * 109.47363 * 270.31090 * 1 2 3 31 31 H 1.09013 * 109.46665 * 30.30849 * 1 2 3 32 32 H 1.08999 * 109.47352 * 150.30316 * 1 2 3 33 33 H 1.08002 * 126.05514 * 359.97438 * 3 2 1 34 34 H 0.96999 * 120.00047 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.47073 * 299.99562 * 8 7 5 36 36 H 1.09000 * 109.47212 * 59.99645 * 8 7 5 37 37 H 0.96998 * 120.00221 * 335.00050 * 11 9 8 38 38 H 0.96996 * 120.00087 * 180.02562 * 15 14 12 39 39 H 1.08995 * 115.55198 * 34.41570 * 20 9 8 40 40 H 1.08998 * 117.49706 * 359.97438 * 21 20 9 41 41 H 1.08998 * 117.50025 * 145.02616 * 21 20 9 42 42 H 1.09002 * 117.49660 * 214.97547 * 22 20 9 43 43 H 1.08995 * 117.50108 * 359.97438 * 22 20 9 44 44 H 1.07995 * 126.98966 * 359.97438 * 25 24 23 45 45 H 1.08002 * 125.49916 * 180.02562 * 26 25 24 46 46 H 1.07996 * 125.78028 * 180.27019 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2373 1.0964 0.0000 4 6 3.5553 0.6865 -0.0027 5 6 4.7477 1.5501 -0.0063 6 8 5.8581 1.0538 -0.0025 7 7 4.6090 2.8907 -0.0136 8 6 5.7956 3.7500 -0.0178 9 6 5.3626 5.2174 -0.0266 10 1 4.8425 5.4484 0.9030 11 7 4.4654 5.4550 -1.1601 12 6 3.5621 6.4832 -1.1146 13 1 3.5115 7.1192 -0.2432 14 6 2.7124 6.7086 -2.1889 15 7 1.8445 7.6972 -2.1454 16 14 2.8005 5.6089 -3.6963 17 1 1.8756 4.4598 -3.5255 18 1 2.4079 6.3858 -4.8994 19 1 4.1883 5.1070 -3.8623 20 6 6.5966 6.1124 -0.1567 21 6 6.9832 6.9629 1.0550 22 6 6.3721 7.6257 -0.1822 23 6 3.5321 -0.7792 0.0053 24 6 4.7101 -1.6804 0.0115 25 6 4.8301 -2.9761 0.6899 26 6 6.0665 -3.4249 0.4160 27 8 6.6955 -2.5275 -0.3579 28 6 5.8988 -1.4803 -0.6150 29 7 2.2698 -1.1427 0.0066 30 1 -0.3634 0.0056 1.0276 31 1 -0.3633 0.8873 -0.5187 32 1 -0.3634 -0.8927 -0.5091 33 1 1.8895 2.1189 -0.0004 34 1 3.7234 3.2866 -0.0169 35 1 6.3908 3.5518 0.8736 36 1 6.3916 3.5420 -0.9064 37 1 4.5111 4.8839 -1.9429 38 1 1.2505 7.8545 -2.8958 39 1 7.4046 5.7131 -0.7696 40 1 6.3582 6.8851 1.9445 41 1 8.0455 7.1235 1.2389 42 1 7.0328 8.2219 -0.8117 43 1 5.3454 7.9835 -0.1068 44 1 4.0777 -3.4687 1.2878 45 1 6.4860 -4.3580 0.7621 46 1 6.1587 -0.6216 -1.2162 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566716996.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:22 Heat of formation + Delta-G solvation = 100.346154 kcal Electronic energy + Delta-G solvation = -29765.961099 eV Core-core repulsion = 25660.662701 eV Total energy + Delta-G solvation = -4105.298398 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.30342 -41.09080 -39.05214 -37.57585 -34.79462 -34.10913 -33.47408 -32.16311 -31.42080 -30.47068 -29.66693 -28.37679 -26.78159 -24.09610 -22.97586 -22.27623 -21.98090 -21.70959 -21.17517 -20.10275 -19.78527 -19.32484 -18.23522 -17.56645 -17.00654 -15.95681 -15.92417 -15.68555 -15.51450 -15.33567 -15.01252 -14.70515 -14.30264 -14.11347 -13.82007 -13.69465 -13.17605 -13.14357 -12.99340 -12.83117 -12.76832 -12.52249 -12.44480 -12.12492 -11.53265 -11.40565 -11.02454 -10.97823 -10.91442 -10.75870 -10.31329 -10.30040 -9.80559 -9.75558 -9.53017 -9.40631 -9.29385 -9.07039 -8.89227 -8.62625 -8.22934 -7.41452 -5.88272 -3.24353 1.46606 1.52250 2.04716 2.21062 2.90058 3.13947 3.26272 3.33917 3.37818 3.50962 3.63197 4.21563 4.38452 4.39479 4.48167 4.72448 4.87311 4.91432 5.09296 5.11927 5.18201 5.22707 5.31538 5.34088 5.40231 5.44004 5.52911 5.55373 5.66440 5.74569 5.89932 5.92241 5.98442 6.12482 6.19288 6.22642 6.27107 6.44442 6.48458 6.54410 6.67063 6.71881 6.81563 6.97303 7.16159 7.47895 7.86698 7.87496 8.29776 8.52847 9.07877 9.80426 10.00246 11.29375 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010306 B = 0.003422 C = 0.002835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2716.167253 B = 8181.400690 C = 9873.784088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.365 5.365 3 C 0.110 3.890 4 C -0.287 4.287 5 C 0.594 3.406 6 O -0.554 6.554 7 N -0.715 5.715 8 C 0.119 3.881 9 C 0.198 3.802 10 H 0.064 0.936 11 N -0.743 5.743 12 C -0.240 4.240 13 H 0.092 0.908 14 C 0.009 3.991 15 N -0.931 5.931 16 Si 0.879 3.121 17 H -0.286 1.286 18 H -0.292 1.292 19 H -0.277 1.277 20 C -0.163 4.163 21 C -0.193 4.193 22 C -0.155 4.155 23 C 0.205 3.795 24 C -0.139 4.139 25 C -0.187 4.187 26 C -0.052 4.052 27 O -0.182 6.182 28 C 0.051 3.949 29 N -0.290 5.290 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.091 0.909 33 H 0.189 0.811 34 H 0.406 0.594 35 H 0.071 0.929 36 H 0.064 0.936 37 H 0.362 0.638 38 H 0.260 0.740 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.110 0.890 44 H 0.149 0.851 45 H 0.202 0.798 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 -16.621 6.225 17.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.143 5.143 3 C -0.040 4.040 4 C -0.302 4.302 5 C 0.381 3.619 6 O -0.434 6.434 7 N -0.366 5.366 8 C -0.006 4.006 9 C 0.088 3.912 10 H 0.082 0.918 11 N -0.385 5.385 12 C -0.370 4.370 13 H 0.110 0.890 14 C -0.187 4.187 15 N -0.578 5.578 16 Si 0.709 3.291 17 H -0.213 1.213 18 H -0.219 1.219 19 H -0.203 1.203 20 C -0.185 4.185 21 C -0.231 4.231 22 C -0.192 4.192 23 C 0.036 3.964 24 C -0.142 4.142 25 C -0.207 4.207 26 C -0.118 4.118 27 O -0.077 6.077 28 C -0.019 4.019 29 N -0.110 5.110 30 H 0.098 0.902 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.206 0.794 34 H 0.242 0.758 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.195 0.805 38 H 0.070 0.930 39 H 0.109 0.891 40 H 0.106 0.894 41 H 0.100 0.900 42 H 0.098 0.902 43 H 0.128 0.872 44 H 0.167 0.833 45 H 0.218 0.782 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges 2.340 -17.762 6.194 18.956 hybrid contribution -0.338 0.458 -1.115 1.251 sum 2.003 -17.304 5.080 18.145 Atomic orbital electron populations 1.22022 0.73477 1.05137 1.03885 1.48106 1.07187 1.03332 1.55715 1.23143 0.90584 0.93817 0.96428 1.21278 0.92644 0.92792 1.23447 1.17096 0.87430 0.81549 0.75782 1.90670 1.26215 1.74408 1.52119 1.45838 1.10974 1.05187 1.74586 1.21633 0.87111 0.89880 1.01954 1.20031 0.89102 0.89521 0.92508 0.91843 1.42856 1.41440 1.37296 1.16915 1.19018 1.09041 1.06205 1.02740 0.88998 1.24633 0.98431 0.97991 0.97679 1.69687 1.24549 1.31586 1.32010 0.86650 0.77606 0.80474 0.84338 1.21279 1.21851 1.20263 1.22943 1.00339 0.94476 1.00727 1.22953 1.00208 1.06964 0.92968 1.22848 1.02757 0.94685 0.98915 1.20778 0.90062 0.89804 0.95712 1.18837 0.92891 0.95723 1.06773 1.22735 0.97985 0.95383 1.04627 1.23780 0.93137 0.95857 0.99004 1.83931 1.41866 1.26635 1.55296 1.24605 0.88025 0.89601 0.99680 1.77347 1.01294 1.06550 1.25852 0.90242 0.88713 0.88983 0.79365 0.75847 0.91112 0.91739 0.80463 0.93024 0.89116 0.89417 0.90036 0.90230 0.87150 0.83305 0.78179 0.76565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.71 11.39 59.85 0.68 1.39 16 2 N -0.36 -4.41 3.95 -67.64 -0.27 -4.68 16 3 C 0.11 1.37 10.94 -16.63 -0.18 1.18 16 4 C -0.29 -4.28 6.31 -102.95 -0.65 -4.93 16 5 C 0.59 9.46 7.81 -12.60 -0.10 9.36 16 6 O -0.55 -9.76 13.04 5.25 0.07 -9.69 16 7 N -0.71 -10.76 5.38 -61.44 -0.33 -11.09 16 8 C 0.12 1.81 5.22 -4.04 -0.02 1.79 16 9 C 0.20 3.35 2.70 -67.93 -0.18 3.17 16 10 H 0.06 1.11 7.84 -51.93 -0.41 0.70 16 11 N -0.74 -15.20 4.34 -53.42 -0.23 -15.44 16 12 C -0.24 -5.92 9.11 -15.06 -0.14 -6.06 16 13 H 0.09 2.45 7.14 -52.49 -0.37 2.08 16 14 C 0.01 0.23 5.50 -17.43 -0.10 0.14 16 15 N -0.93 -27.08 13.97 55.49 0.78 -26.31 16 16 Si 0.88 20.62 27.74 -169.99 -4.71 15.90 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 19 H -0.28 -6.29 6.52 56.52 0.37 -5.92 16 20 C -0.16 -2.65 5.36 -90.62 -0.49 -3.14 16 21 C -0.19 -2.81 10.18 -26.69 -0.27 -3.08 16 22 C -0.15 -2.67 9.78 -26.69 -0.26 -2.93 16 23 C 0.20 3.17 7.34 -80.55 -0.59 2.58 16 24 C -0.14 -2.06 6.07 -103.17 -0.63 -2.68 16 25 C -0.19 -2.32 11.15 -37.52 -0.42 -2.74 16 26 C -0.05 -0.55 12.04 29.36 0.35 -0.20 16 27 O -0.18 -2.37 10.55 6.69 0.07 -2.30 16 28 C 0.05 0.73 10.28 29.88 0.31 1.04 16 29 N -0.29 -4.27 12.50 34.58 0.43 -3.84 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.09 0.54 8.13 -51.92 -0.42 0.11 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.19 1.86 7.48 -52.49 -0.39 1.46 16 34 H 0.41 5.92 7.09 -40.82 -0.29 5.63 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 37 H 0.36 7.60 5.66 -40.82 -0.23 7.37 16 38 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 39 H 0.09 1.42 8.11 -51.93 -0.42 0.99 16 40 H 0.09 1.24 8.05 -51.93 -0.42 0.82 16 41 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.11 2.22 6.23 -51.93 -0.32 1.89 16 44 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.20 1.25 8.06 -52.49 -0.42 0.83 16 46 H 0.22 3.09 6.36 -52.49 -0.33 2.76 16 LS Contribution 388.74 15.07 5.86 5.86 Total: -1.00 -32.56 388.74 -7.18 -39.74 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: -6.16 Total: 16.92 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -2.68 Total: -5.09 kcal Atomic # 7 Polarization: -61.72 SS G_CDS: 0.38 Total: -61.34 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.14 Total: -11.98 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -4.71 Total: 15.90 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -32.56 -7.18 -39.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566716996.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.087 kcal (2) G-P(sol) polarization free energy of solvation -32.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds