Wall clock time and date at job start Sat Apr 11 2020 07:11:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.34660 * 125.80655 * 2 1 4 4 C 1.37861 * 107.39788 * 180.24776 * 3 2 1 5 5 C 1.47681 * 126.37317 * 179.73940 * 4 3 2 6 6 C 1.36603 * 125.65311 * 179.97438 * 5 4 3 7 7 C 1.39763 * 107.12578 * 179.97438 * 6 5 4 8 8 C 1.37854 * 106.77955 * 0.02562 * 7 6 5 9 9 C 1.46300 * 125.96955 * 180.02562 * 8 7 6 10 10 O 1.21745 * 120.00064 * 0.02562 * 9 8 7 11 11 N 1.34778 * 120.00058 * 179.97438 * 9 8 7 12 12 C 1.46502 * 120.00234 * 179.97438 * 11 9 8 13 13 C 1.52994 * 109.47227 * 180.02562 * 12 11 9 14 14 H 1.08999 * 109.47132 * 295.00433 * 13 12 11 15 15 N 1.46503 * 109.47550 * 54.99658 * 13 12 11 16 16 C 1.36932 * 120.00491 * 205.00162 * 15 13 12 17 17 H 1.07996 * 119.99767 * 359.97438 * 16 15 13 18 18 C 1.38818 * 119.99895 * 180.02562 * 16 15 13 19 19 N 1.31618 * 120.00327 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99721 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.47106 * 89.99802 * 20 18 16 22 22 H 1.48500 * 109.47310 * 209.99950 * 20 18 16 23 23 H 1.48500 * 109.47391 * 329.99944 * 20 18 16 24 24 C 1.52998 * 109.47152 * 174.99803 * 13 12 11 25 25 C 1.53000 * 117.49924 * 248.74712 * 24 13 12 26 26 C 1.53008 * 117.49806 * 180.08618 * 24 13 12 27 27 O 1.34326 * 125.64957 * 359.69060 * 5 4 3 28 28 C 1.41171 * 107.25299 * 359.58096 * 4 3 2 29 29 N 1.30547 * 108.09580 * 0.42526 * 28 4 3 30 30 H 1.09000 * 109.47108 * 89.99773 * 1 2 3 31 31 H 1.08995 * 109.46998 * 210.00091 * 1 2 3 32 32 H 1.08998 * 109.46526 * 330.00137 * 1 2 3 33 33 H 1.08002 * 126.29742 * 359.97438 * 3 2 1 34 34 H 1.08003 * 126.43542 * 359.94350 * 6 5 4 35 35 H 1.08005 * 126.61663 * 179.97438 * 7 6 5 36 36 H 0.96999 * 120.00049 * 0.02562 * 11 9 8 37 37 H 1.09003 * 109.46581 * 299.99968 * 12 11 9 38 38 H 1.08990 * 109.47126 * 60.00032 * 12 11 9 39 39 H 0.97009 * 119.99151 * 25.00164 * 15 13 12 40 40 H 0.96996 * 120.00258 * 180.02562 * 19 18 16 41 41 H 1.08993 * 115.55037 * 34.41954 * 24 13 12 42 42 H 1.09002 * 117.49962 * 359.97438 * 25 24 13 43 43 H 1.09000 * 117.49612 * 145.02270 * 25 24 13 44 44 H 1.09002 * 117.49565 * 214.97773 * 26 24 13 45 45 H 1.08994 * 117.49910 * 0.02562 * 26 24 13 46 46 H 1.07991 * 125.95389 * 180.14115 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2529 1.0921 0.0000 4 6 3.5609 0.6567 -0.0057 5 6 4.7674 1.5084 -0.0132 6 6 6.0580 1.0608 -0.0183 7 6 6.8845 2.1878 -0.0252 8 6 6.0555 3.2893 -0.0234 9 6 6.4848 4.6879 -0.0294 10 8 7.6713 4.9604 -0.0371 11 7 5.5667 5.6746 -0.0273 12 6 5.9966 7.0751 -0.0328 13 6 4.7673 7.9859 -0.0284 14 1 4.2119 7.8511 -0.9566 15 7 3.9091 7.6427 1.1082 16 6 2.5688 7.9194 1.0624 17 1 2.1444 8.3910 0.1885 18 6 1.7558 7.5945 2.1397 19 7 2.2731 7.0202 3.2050 20 14 -0.0724 7.9727 2.0775 21 1 -0.7983 6.8134 1.4990 22 1 -0.5711 8.2333 3.4518 23 1 -0.3014 9.1719 1.2321 24 6 5.2136 9.4444 0.0917 25 6 4.8906 10.1769 1.3955 26 6 4.1229 10.5173 0.1156 27 8 4.7775 2.8516 -0.0215 28 6 3.5325 -0.7547 0.0007 29 7 2.2837 -1.1351 0.0004 30 1 -0.3633 0.0000 -1.0277 31 1 -0.3633 -0.8899 0.5138 32 1 -0.3632 0.8900 0.5138 33 1 1.9210 2.1199 -0.0004 34 1 6.3793 0.0297 -0.0167 35 1 7.9645 2.1947 -0.0300 36 1 4.6214 5.4575 -0.0215 37 1 6.5986 7.2738 0.8539 38 1 6.5901 7.2695 -0.9260 39 1 4.2904 7.2193 1.8933 40 1 1.7050 6.7929 3.9576 41 1 6.1516 9.6914 -0.4053 42 1 4.3598 9.6199 2.1676 43 1 5.6161 10.9062 1.7561 44 1 4.3438 11.4702 -0.3653 45 1 3.0875 10.1840 0.0462 46 1 4.3937 -1.4062 0.0007 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566728230.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:26 Heat of formation + Delta-G solvation = 80.089788 kcal Electronic energy + Delta-G solvation = -29383.616146 eV Core-core repulsion = 25277.439366 eV Total energy + Delta-G solvation = -4106.176780 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -43.55295 -42.09980 -40.55570 -39.10087 -35.99538 -35.10273 -34.70326 -33.85663 -32.78573 -32.31481 -30.41156 -29.38845 -27.60616 -25.72037 -24.82170 -23.61423 -23.13571 -22.87619 -21.88424 -21.45036 -21.12930 -20.61038 -19.55812 -19.00350 -18.18124 -17.43605 -17.09212 -16.81131 -16.45790 -16.38631 -16.31549 -15.92491 -15.60394 -15.38493 -15.20363 -14.75850 -14.51666 -14.23967 -14.00749 -13.84306 -13.72776 -13.71908 -13.64641 -13.09769 -12.94758 -12.86149 -12.66404 -12.58900 -12.12574 -11.99947 -11.94976 -11.60175 -11.41838 -11.10312 -11.02411 -10.84236 -10.66132 -10.61060 -10.54594 -10.10321 -8.99205 -8.72626 -7.87466 -5.15475 -0.18762 0.70853 1.17561 1.36288 1.47363 1.50662 1.56943 1.69164 2.10686 2.17018 2.27027 2.58503 3.14780 3.34323 3.47122 3.73249 3.84215 3.87459 3.95954 3.99448 4.05824 4.20787 4.29078 4.34536 4.38177 4.49428 4.50397 4.56426 4.59204 4.65155 4.65912 4.70087 4.90858 4.92647 4.98370 5.00573 5.19086 5.23012 5.38831 5.40263 5.48651 5.51711 5.67297 5.70310 5.80128 5.92053 6.31784 6.48841 6.52760 7.04637 7.40191 8.10839 8.36511 9.34953 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008506 B = 0.003528 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.907464 B = 7935.310730 C =10762.493993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.365 5.365 3 C 0.089 3.911 4 C -0.211 4.211 5 C 0.109 3.891 6 C -0.213 4.213 7 C -0.104 4.104 8 C -0.118 4.118 9 C 0.599 3.401 10 O -0.563 6.563 11 N -0.701 5.701 12 C 0.126 3.874 13 C 0.192 3.808 14 H 0.060 0.940 15 N -0.721 5.721 16 C -0.218 4.218 17 H 0.076 0.924 18 C -0.065 4.065 19 N -0.965 5.965 20 Si 0.956 3.044 21 H -0.288 1.288 22 H -0.305 1.305 23 H -0.273 1.273 24 C -0.167 4.167 25 C -0.173 4.173 26 C -0.170 4.170 27 O -0.172 6.172 28 C 0.093 3.907 29 N -0.320 5.320 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.193 0.807 34 H 0.192 0.808 35 H 0.173 0.827 36 H 0.411 0.589 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.373 0.627 40 H 0.246 0.754 41 H 0.118 0.882 42 H 0.076 0.924 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.078 0.922 46 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.640 -12.431 -9.424 15.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.144 5.144 3 C -0.062 4.062 4 C -0.223 4.223 5 C 0.056 3.944 6 C -0.232 4.232 7 C -0.124 4.124 8 C -0.170 4.170 9 C 0.387 3.613 10 O -0.446 6.446 11 N -0.350 5.350 12 C 0.002 3.998 13 C 0.083 3.917 14 H 0.078 0.922 15 N -0.361 5.361 16 C -0.350 4.350 17 H 0.094 0.906 18 C -0.258 4.258 19 N -0.616 5.616 20 Si 0.787 3.213 21 H -0.215 1.215 22 H -0.233 1.233 23 H -0.199 1.199 24 C -0.189 4.189 25 C -0.210 4.210 26 C -0.207 4.207 27 O -0.068 6.068 28 C -0.094 4.094 29 N -0.140 5.140 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.125 0.875 33 H 0.210 0.790 34 H 0.209 0.791 35 H 0.190 0.810 36 H 0.247 0.753 37 H 0.076 0.924 38 H 0.106 0.894 39 H 0.206 0.794 40 H 0.055 0.945 41 H 0.136 0.864 42 H 0.095 0.905 43 H 0.109 0.891 44 H 0.120 0.880 45 H 0.096 0.904 46 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.997 -12.950 -9.511 16.098 hybrid contribution -0.853 0.911 0.818 1.492 sum 0.144 -12.040 -8.693 14.851 Atomic orbital electron populations 1.22336 0.71314 1.06266 1.05282 1.48692 1.08388 1.03078 1.54238 1.23417 0.90671 0.94632 0.97454 1.18169 0.89051 0.92612 1.22442 1.20205 0.94583 0.79094 1.00560 1.21889 0.89708 1.01387 1.10241 1.22313 1.01489 0.89971 0.98638 1.22177 0.81707 0.94823 1.18298 1.16645 0.85379 0.82674 0.76589 1.90816 1.16839 1.83096 1.53828 1.45900 1.10363 1.06327 1.72456 1.21603 0.96925 0.79081 1.02232 1.20131 0.89563 0.90587 0.91400 0.92173 1.42542 1.04678 1.72021 1.16871 1.19422 0.84923 1.30674 0.99988 0.90570 1.25302 1.01048 1.02719 0.96694 1.69810 1.35349 1.49412 1.06998 0.85391 0.82095 0.77908 0.75876 1.21495 1.23286 1.19854 1.23042 0.99770 0.94173 1.01878 1.22775 1.03309 1.02859 0.92097 1.22841 0.97054 0.99087 1.01668 1.84086 1.28988 1.22464 1.71248 1.24360 0.95883 0.92400 0.96732 1.77176 1.02110 1.08906 1.25831 0.88674 0.87980 0.87541 0.78975 0.79058 0.80951 0.75287 0.92412 0.89437 0.79434 0.94466 0.86427 0.90498 0.89060 0.87999 0.90394 0.76013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.04 11.45 127.77 1.46 2.50 16 2 N -0.37 -7.39 3.99 -367.61 -1.47 -8.86 16 3 C 0.09 2.01 11.51 84.17 0.97 2.98 16 4 C -0.21 -4.96 6.12 -20.15 -0.12 -5.08 16 5 C 0.11 2.89 7.16 24.38 0.17 3.07 16 6 C -0.21 -4.75 10.56 22.26 0.24 -4.51 16 7 C -0.10 -2.76 10.65 22.55 0.24 -2.52 16 8 C -0.12 -3.85 7.16 24.28 0.17 -3.68 16 9 C 0.60 21.59 7.77 86.34 0.67 22.26 16 10 O -0.56 -22.37 16.87 -4.49 -0.08 -22.44 16 11 N -0.70 -24.59 5.38 -467.44 -2.52 -27.10 16 12 C 0.13 4.18 5.22 86.38 0.45 4.63 16 13 C 0.19 6.84 2.86 44.99 0.13 6.97 16 14 H 0.06 2.14 8.08 -2.39 -0.02 2.12 16 15 N -0.72 -32.16 3.08 -322.95 -0.99 -33.16 16 16 C -0.22 -10.77 8.15 84.04 0.69 -10.09 16 17 H 0.08 3.65 6.91 -2.91 -0.02 3.63 16 18 C -0.07 -3.45 5.50 84.86 0.47 -2.98 16 19 N -0.96 -55.69 13.06 21.65 0.28 -55.41 16 20 Si 0.96 43.47 29.55 68.60 2.03 45.50 16 21 H -0.29 -12.73 7.11 99.48 0.71 -12.03 16 22 H -0.31 -14.46 7.11 99.48 0.71 -13.75 16 23 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 24 C -0.17 -5.41 5.71 -10.79 -0.06 -5.47 16 25 C -0.17 -6.24 9.74 30.62 0.30 -5.94 16 26 C -0.17 -5.63 9.87 30.62 0.30 -5.33 16 27 O -0.17 -5.48 10.42 -10.62 -0.11 -5.59 16 28 C 0.09 1.80 11.76 85.60 1.01 2.81 16 29 N -0.32 -7.08 12.51 -56.31 -0.70 -7.78 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.19 4.00 8.06 -2.91 -0.02 3.97 16 34 H 0.19 2.65 8.06 -2.91 -0.02 2.63 16 35 H 0.17 4.02 8.06 -2.91 -0.02 3.99 16 36 H 0.41 15.04 7.88 -92.71 -0.73 14.31 16 37 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.37 18.79 7.80 -92.70 -0.72 18.07 16 40 H 0.25 14.11 8.31 -92.71 -0.77 13.34 16 41 H 0.12 3.15 8.11 -2.39 -0.02 3.13 16 42 H 0.08 3.48 6.68 -2.39 -0.02 3.46 16 43 H 0.09 2.86 8.14 -2.39 -0.02 2.84 16 44 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 45 H 0.08 2.99 6.22 -2.39 -0.01 2.97 16 46 H 0.22 2.52 8.06 -2.92 -0.02 2.50 16 Total: -1.00 -68.15 396.58 3.10 -65.05 By element: Atomic # 1 Polarization: 50.62 SS G_CDS: -0.42 Total: 50.20 kcal Atomic # 6 Polarization: -7.48 SS G_CDS: 7.08 Total: -0.40 kcal Atomic # 7 Polarization: -126.92 SS G_CDS: -5.40 Total: -132.32 kcal Atomic # 8 Polarization: -27.84 SS G_CDS: -0.19 Total: -28.03 kcal Atomic # 14 Polarization: 43.47 SS G_CDS: 2.03 Total: 45.50 kcal Total: -68.15 3.10 -65.05 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566728230.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.139 kcal (2) G-P(sol) polarization free energy of solvation -68.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.049 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds