Wall clock time and date at job start Sat Apr 11 2020 07:11:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81401 * 109.47366 * 2 1 4 4 O 1.42098 * 108.57787 * 65.50983 * 3 2 1 5 5 O 1.42093 * 108.57616 * 294.48509 * 3 2 1 6 6 C 1.81397 * 101.91806 * 180.02562 * 3 2 1 7 7 C 1.50702 * 109.46958 * 179.97438 * 6 3 2 8 8 O 1.21285 * 119.99901 * 0.02562 * 7 6 3 9 9 N 1.34777 * 120.00249 * 179.97438 * 7 6 3 10 10 C 1.46949 * 120.84457 * 359.97438 * 9 7 6 11 11 C 1.53148 * 109.02113 * 234.04859 * 10 9 7 12 12 C 1.53235 * 108.83049 * 305.53049 * 11 10 9 13 13 C 1.52861 * 109.28439 * 61.83326 * 12 11 10 14 14 H 1.08997 * 109.24844 * 55.94138 * 13 12 11 15 15 C 1.52769 * 110.20535 * 175.98916 * 13 12 11 16 16 N 1.46897 * 109.19402 * 66.54039 * 15 13 12 17 17 C 1.36930 * 120.77137 * 233.31308 * 16 15 13 18 18 H 1.08002 * 119.99657 * 151.97324 * 17 16 15 19 19 C 1.38813 * 120.00356 * 331.97045 * 17 16 15 20 20 N 1.31624 * 119.99404 * 343.13329 * 19 17 16 21 21 Si 1.86800 * 120.00100 * 163.13337 * 19 17 16 22 22 H 1.48497 * 109.46909 * 90.00224 * 21 19 17 23 23 H 1.48496 * 109.46802 * 210.00122 * 21 19 17 24 24 H 1.48495 * 109.47074 * 330.00114 * 21 19 17 25 25 C 1.46972 * 118.45338 * 53.33650 * 16 15 13 26 26 C 1.53100 * 108.76660 * 305.61038 * 25 16 15 27 27 C 1.47305 * 120.84686 * 179.97438 * 9 7 6 28 28 H 1.08996 * 110.07852 * 4.89064 * 27 9 7 29 29 H 1.08991 * 109.47527 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46947 * 300.00384 * 1 2 3 31 31 H 1.09001 * 109.46688 * 59.99913 * 1 2 3 32 32 H 1.08998 * 109.46947 * 239.99616 * 2 1 3 33 33 H 1.09001 * 109.46688 * 120.00087 * 2 1 3 34 34 H 1.08998 * 109.47481 * 60.00096 * 6 3 2 35 35 H 1.08999 * 109.47217 * 299.99689 * 6 3 2 36 36 H 1.09005 * 109.54732 * 353.90719 * 10 9 7 37 37 H 1.09003 * 109.54761 * 114.09529 * 10 9 7 38 38 H 1.08999 * 109.46995 * 65.92635 * 11 10 9 39 39 H 1.08999 * 109.46901 * 185.92798 * 11 10 9 40 40 H 1.09004 * 110.15645 * 301.50190 * 12 11 10 41 41 H 1.08994 * 108.88193 * 181.39449 * 12 11 10 42 42 H 1.09002 * 109.52106 * 306.62553 * 15 13 12 43 43 H 1.08998 * 109.51610 * 186.45188 * 15 13 12 44 44 H 0.97003 * 119.99183 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.61533 * 65.44116 * 25 16 15 46 46 H 1.08996 * 109.60989 * 185.78655 * 25 16 15 47 47 H 1.08999 * 109.44868 * 175.45891 * 26 25 16 48 48 H 1.08998 * 109.45012 * 295.39039 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7593 2.3232 1.2258 5 8 1.7594 2.3231 -1.2258 6 6 3.9330 1.4717 -0.0008 7 6 4.6178 2.8142 -0.0015 8 8 3.9576 3.8316 -0.0010 9 7 5.9637 2.8842 -0.0017 10 6 6.7817 1.6634 -0.0006 11 6 7.7657 1.7230 1.1714 12 6 8.5678 3.0253 1.0781 13 6 7.6139 4.2147 1.1891 14 1 7.0429 4.1322 2.1138 15 6 8.4015 5.5236 1.1984 16 7 9.0446 5.7096 -0.1092 17 6 10.3906 5.9439 -0.2010 18 1 10.9323 5.6413 -1.0849 19 6 11.0588 6.5705 0.8421 20 7 10.3798 7.2306 1.7562 21 14 12.9214 6.4766 0.9482 22 1 13.5174 7.6189 0.2097 23 1 13.3396 6.5353 2.3719 24 1 13.3878 5.2013 0.3474 25 6 8.2095 5.6389 -1.3166 26 6 7.4464 4.3117 -1.3106 27 6 6.6523 4.1864 -0.0029 28 1 5.9256 4.9941 0.0836 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 4.2253 0.9147 -0.8910 35 1 4.2260 0.9145 0.8890 36 1 6.1361 0.7920 0.1093 37 1 7.3330 1.5929 -0.9382 38 1 7.2143 1.6888 2.1110 39 1 8.4459 0.8729 1.1182 40 1 9.0985 3.0723 0.1271 41 1 9.2856 3.0570 1.8976 42 1 9.1637 5.4846 1.9767 43 1 7.7239 6.3550 1.3924 44 1 10.8468 7.6681 2.4853 45 1 7.5018 6.4678 -1.3211 46 1 8.8421 5.6932 -2.2025 47 1 6.7630 4.2821 -2.1592 48 1 8.1539 3.4859 -1.3857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566827207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:44 Heat of formation + Delta-G solvation = -80.111138 kcal Electronic energy + Delta-G solvation = -29918.548054 eV Core-core repulsion = 25908.575641 eV Total energy + Delta-G solvation = -4009.972413 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -40.53037 -38.28574 -37.13169 -36.15370 -35.66879 -33.57449 -32.87469 -32.62630 -30.92442 -30.15127 -29.18687 -25.65613 -25.00123 -24.35688 -22.58173 -22.10366 -21.47129 -19.63172 -18.93848 -17.94402 -17.74504 -16.99732 -16.63575 -16.38625 -16.33422 -15.48497 -15.26820 -15.10398 -14.65719 -14.41607 -14.14462 -13.68477 -13.66507 -13.50929 -13.25034 -12.94353 -12.91796 -12.83325 -12.48470 -12.43137 -12.28704 -12.18011 -12.12621 -11.98185 -11.60754 -11.37651 -11.10136 -11.00551 -10.76735 -10.75002 -10.66642 -10.54530 -10.24115 -10.12235 -10.05451 -9.95646 -9.67661 -9.47086 -8.55738 -8.38716 -6.69757 -5.81548 -3.23849 -0.39461 2.41113 2.48155 2.81391 3.34832 3.42354 3.43458 3.49796 3.70158 4.11480 4.21147 4.21277 4.46715 4.62123 4.71258 4.75830 4.83779 5.03339 5.10361 5.17084 5.19889 5.33605 5.40168 5.41648 5.44844 5.51337 5.57929 5.67523 5.82304 5.97816 6.00676 6.13139 6.27487 6.34396 6.39799 6.45717 6.63763 6.73968 6.79755 6.91166 6.98546 7.27891 7.38344 7.61688 7.76777 7.97543 8.41743 9.18054 9.81252 10.38980 11.27231 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.029411 B = 0.002665 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.804947 B =10505.474531 C =10739.735306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.622 4.622 3 S 2.450 3.550 4 O -0.918 6.918 5 O -0.919 6.919 6 C -0.660 4.660 7 C 0.539 3.461 8 O -0.534 6.534 9 N -0.593 5.593 10 C 0.102 3.898 11 C -0.136 4.136 12 C -0.105 4.105 13 C -0.116 4.116 14 H 0.059 0.941 15 C 0.178 3.822 16 N -0.588 5.588 17 C -0.251 4.251 18 H 0.065 0.935 19 C 0.003 3.997 20 N -0.901 5.901 21 Si 0.900 3.100 22 H -0.287 1.287 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.146 3.854 26 C -0.141 4.141 27 C 0.151 3.849 28 H 0.099 0.901 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.132 0.868 33 H 0.132 0.868 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.076 0.924 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.061 0.939 42 H 0.093 0.907 43 H 0.021 0.979 44 H 0.254 0.746 45 H 0.021 0.979 46 H 0.058 0.942 47 H 0.053 0.947 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.374 -20.319 -2.797 24.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.751 4.751 3 S 2.626 3.374 4 O -0.915 6.915 5 O -0.916 6.916 6 C -0.787 4.787 7 C 0.324 3.676 8 O -0.412 6.412 9 N -0.324 5.324 10 C -0.021 4.021 11 C -0.174 4.174 12 C -0.143 4.143 13 C -0.137 4.137 14 H 0.077 0.923 15 C 0.051 3.949 16 N -0.311 5.311 17 C -0.380 4.380 18 H 0.083 0.917 19 C -0.195 4.195 20 N -0.546 5.546 21 Si 0.730 3.270 22 H -0.214 1.214 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.019 3.981 26 C -0.181 4.181 27 C 0.050 3.950 28 H 0.117 0.883 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.150 0.850 33 H 0.150 0.850 34 H 0.175 0.825 35 H 0.175 0.825 36 H 0.095 0.905 37 H 0.092 0.908 38 H 0.081 0.919 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.111 0.889 43 H 0.039 0.961 44 H 0.064 0.936 45 H 0.039 0.961 46 H 0.076 0.924 47 H 0.071 0.929 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.079 -18.903 -2.656 23.719 hybrid contribution 1.640 -1.110 0.177 1.988 sum -12.439 -20.013 -2.479 23.693 Atomic orbital electron populations 1.21513 0.90144 1.04851 1.04026 1.30355 1.07831 1.25429 1.11479 1.07549 0.76524 0.77376 0.75908 1.93588 1.79841 1.72354 1.45763 1.93583 1.79874 1.72382 1.45785 1.30887 1.28464 1.06393 1.12958 1.19040 0.83165 0.88074 0.77321 1.90857 1.63746 1.35866 1.50713 1.48437 1.04228 1.08783 1.70959 1.21817 0.93981 0.86256 0.99997 1.22025 0.98014 0.99735 0.97662 1.21496 0.97361 0.91875 1.03558 1.22080 0.96272 0.99397 0.95964 0.92272 1.20705 0.95118 0.89493 0.89562 1.44030 1.04461 1.82648 0.99937 1.19115 0.82968 1.32089 1.03844 0.91722 1.25043 0.97856 0.97132 0.99498 1.70029 1.34346 1.34691 1.15497 0.86337 0.85847 0.77893 0.76926 1.21416 1.21608 1.20544 1.20860 0.93271 0.92638 0.91312 1.22476 0.98720 1.01473 0.95436 1.21615 0.93730 0.83264 0.96440 0.88328 0.90019 0.90658 0.90663 0.84971 0.84961 0.82523 0.82493 0.90520 0.90793 0.91911 0.91089 0.90212 0.92009 0.88916 0.96076 0.93580 0.96089 0.92397 0.92861 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.92 37.16 0.37 -0.47 16 2 C -0.62 -3.05 6.52 37.16 0.24 -2.80 16 3 S 2.45 25.42 3.96 -107.50 -0.43 24.99 16 4 O -0.92 -13.36 17.95 -59.51 -1.07 -14.43 16 5 O -0.92 -13.22 17.94 -59.54 -1.07 -14.29 16 6 C -0.66 -5.65 4.64 36.01 0.17 -5.48 16 7 C 0.54 8.05 7.73 -10.98 -0.08 7.97 16 8 O -0.53 -10.41 15.07 2.55 0.04 -10.37 16 9 N -0.59 -8.56 2.66 -164.65 -0.44 -9.00 16 10 C 0.10 1.09 5.84 -3.72 -0.02 1.07 16 11 C -0.14 -1.59 6.12 -26.53 -0.16 -1.75 16 12 C -0.11 -1.70 4.82 -26.68 -0.13 -1.82 16 13 C -0.12 -2.14 2.50 -90.72 -0.23 -2.36 16 14 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 15 C 0.18 4.10 4.70 -3.94 -0.02 4.08 16 16 N -0.59 -14.05 2.61 -172.63 -0.45 -14.50 16 17 C -0.25 -6.57 9.60 -15.06 -0.14 -6.72 16 18 H 0.07 1.67 7.88 -52.49 -0.41 1.25 16 19 C 0.00 0.09 4.92 -17.43 -0.09 0.01 16 20 N -0.90 -25.62 11.19 55.49 0.62 -25.00 16 21 Si 0.90 21.11 29.59 -169.99 -5.03 16.08 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.15 3.01 6.50 -3.73 -0.02 2.98 16 26 C -0.14 -2.42 5.03 -26.42 -0.13 -2.56 16 27 C 0.15 2.65 2.66 -67.14 -0.18 2.48 16 28 H 0.10 1.98 7.06 -51.93 -0.37 1.61 16 29 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.13 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 34 H 0.16 0.72 7.94 -51.93 -0.41 0.31 16 35 H 0.16 0.76 7.71 -51.92 -0.40 0.36 16 36 H 0.08 0.53 5.96 -51.93 -0.31 0.22 16 37 H 0.07 0.76 7.25 -51.93 -0.38 0.38 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.40 6.03 -51.93 -0.31 1.09 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 42 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.25 7.02 8.31 -40.82 -0.34 6.68 16 45 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 46 H 0.06 1.15 7.94 -51.93 -0.41 0.74 16 47 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 48 H 0.07 1.10 5.27 -51.93 -0.27 0.82 16 LS Contribution 378.92 15.07 5.71 5.71 Total: -1.00 -37.06 378.92 -10.34 -47.40 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: -7.80 Total: -1.20 kcal Atomic # 6 Polarization: -4.96 SS G_CDS: -0.43 Total: -5.39 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.27 Total: -48.50 kcal Atomic # 8 Polarization: -36.99 SS G_CDS: -2.10 Total: -39.09 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.03 Total: 16.08 kcal Atomic # 16 Polarization: 25.42 SS G_CDS: -0.43 Total: 24.99 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -37.06 -10.34 -47.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566827207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.710 kcal (2) G-P(sol) polarization free energy of solvation -37.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.770 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds