Wall clock time and date at job start Sat Apr 11 2020 07:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 S 1.81401 * 109.47366 * 2 1 4 4 O 1.42098 * 108.57787 * 65.50983 * 3 2 1 5 5 O 1.42093 * 108.57616 * 294.48509 * 3 2 1 6 6 C 1.81397 * 101.91806 * 180.02562 * 3 2 1 7 7 C 1.50702 * 109.46958 * 179.97438 * 6 3 2 8 8 O 1.21285 * 119.99901 * 0.02562 * 7 6 3 9 9 N 1.34777 * 120.00249 * 179.97438 * 7 6 3 10 10 C 1.46949 * 120.84457 * 359.97438 * 9 7 6 11 11 C 1.53148 * 109.02113 * 234.04859 * 10 9 7 12 12 C 1.53235 * 108.83049 * 305.53049 * 11 10 9 13 13 C 1.52861 * 109.28439 * 61.83326 * 12 11 10 14 14 H 1.08997 * 109.24844 * 55.94138 * 13 12 11 15 15 C 1.52769 * 110.20535 * 175.98916 * 13 12 11 16 16 N 1.46897 * 109.19402 * 66.54039 * 15 13 12 17 17 C 1.36930 * 120.77137 * 233.31308 * 16 15 13 18 18 H 1.08002 * 119.99657 * 151.97324 * 17 16 15 19 19 C 1.38813 * 120.00356 * 331.97045 * 17 16 15 20 20 N 1.31624 * 119.99404 * 343.13329 * 19 17 16 21 21 Si 1.86800 * 120.00100 * 163.13337 * 19 17 16 22 22 H 1.48497 * 109.46909 * 90.00224 * 21 19 17 23 23 H 1.48496 * 109.46802 * 210.00122 * 21 19 17 24 24 H 1.48495 * 109.47074 * 330.00114 * 21 19 17 25 25 C 1.46972 * 118.45338 * 53.33650 * 16 15 13 26 26 C 1.53100 * 108.76660 * 305.61038 * 25 16 15 27 27 C 1.47305 * 120.84686 * 179.97438 * 9 7 6 28 28 H 1.08996 * 110.07852 * 4.89064 * 27 9 7 29 29 H 1.08991 * 109.47527 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46947 * 300.00384 * 1 2 3 31 31 H 1.09001 * 109.46688 * 59.99913 * 1 2 3 32 32 H 1.08998 * 109.46947 * 239.99616 * 2 1 3 33 33 H 1.09001 * 109.46688 * 120.00087 * 2 1 3 34 34 H 1.08998 * 109.47481 * 60.00096 * 6 3 2 35 35 H 1.08999 * 109.47217 * 299.99689 * 6 3 2 36 36 H 1.09005 * 109.54732 * 353.90719 * 10 9 7 37 37 H 1.09003 * 109.54761 * 114.09529 * 10 9 7 38 38 H 1.08999 * 109.46995 * 65.92635 * 11 10 9 39 39 H 1.08999 * 109.46901 * 185.92798 * 11 10 9 40 40 H 1.09004 * 110.15645 * 301.50190 * 12 11 10 41 41 H 1.08994 * 108.88193 * 181.39449 * 12 11 10 42 42 H 1.09002 * 109.52106 * 306.62553 * 15 13 12 43 43 H 1.08998 * 109.51610 * 186.45188 * 15 13 12 44 44 H 0.97003 * 119.99183 * 179.97438 * 20 19 17 45 45 H 1.08995 * 109.61533 * 65.44116 * 25 16 15 46 46 H 1.08996 * 109.60989 * 185.78655 * 25 16 15 47 47 H 1.08999 * 109.44868 * 175.45891 * 26 25 16 48 48 H 1.08998 * 109.45012 * 295.39039 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1348 1.7102 0.0000 4 8 1.7593 2.3232 1.2258 5 8 1.7594 2.3231 -1.2258 6 6 3.9330 1.4717 -0.0008 7 6 4.6178 2.8142 -0.0015 8 8 3.9576 3.8316 -0.0010 9 7 5.9637 2.8842 -0.0017 10 6 6.7817 1.6634 -0.0006 11 6 7.7657 1.7230 1.1714 12 6 8.5678 3.0253 1.0781 13 6 7.6139 4.2147 1.1891 14 1 7.0429 4.1322 2.1138 15 6 8.4015 5.5236 1.1984 16 7 9.0446 5.7096 -0.1092 17 6 10.3906 5.9439 -0.2010 18 1 10.9323 5.6413 -1.0849 19 6 11.0588 6.5705 0.8421 20 7 10.3798 7.2306 1.7562 21 14 12.9214 6.4766 0.9482 22 1 13.5174 7.6189 0.2097 23 1 13.3396 6.5353 2.3719 24 1 13.3878 5.2013 0.3474 25 6 8.2095 5.6389 -1.3166 26 6 7.4464 4.3117 -1.3106 27 6 6.6523 4.1864 -0.0029 28 1 5.9256 4.9941 0.0836 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 4.2253 0.9147 -0.8910 35 1 4.2260 0.9145 0.8890 36 1 6.1361 0.7920 0.1093 37 1 7.3330 1.5929 -0.9382 38 1 7.2143 1.6888 2.1110 39 1 8.4459 0.8729 1.1182 40 1 9.0985 3.0723 0.1271 41 1 9.2856 3.0570 1.8976 42 1 9.1637 5.4846 1.9767 43 1 7.7239 6.3550 1.3924 44 1 10.8468 7.6681 2.4853 45 1 7.5018 6.4678 -1.3211 46 1 8.8421 5.6932 -2.2025 47 1 6.7630 4.2821 -2.1592 48 1 8.1539 3.4859 -1.3857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566827207.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:43 Heat of formation + Delta-G solvation = -108.453882 kcal Electronic energy + Delta-G solvation = -29919.777088 eV Core-core repulsion = 25908.575641 eV Total energy + Delta-G solvation = -4011.201447 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.76085 -39.67334 -37.98915 -37.20867 -36.96372 -34.50128 -34.04883 -33.92567 -32.30183 -31.45896 -30.62689 -27.30608 -26.31929 -24.98510 -24.06164 -23.55376 -22.89712 -20.87672 -19.74387 -19.46197 -18.67216 -18.50553 -17.51129 -17.37702 -17.25887 -16.94369 -16.43642 -16.29239 -15.98772 -15.46789 -15.25919 -15.13173 -15.04899 -14.64023 -14.26899 -14.14024 -13.96925 -13.82633 -13.64930 -13.54073 -13.36602 -13.22043 -13.07448 -13.00465 -12.93268 -12.58108 -12.56015 -12.32513 -12.29267 -12.02415 -11.96559 -11.85413 -11.80405 -11.49407 -11.40753 -11.25831 -11.19943 -10.95729 -10.53814 -9.67043 -8.70353 -7.87298 -5.33207 -1.07336 1.35879 1.47458 1.48549 1.58362 1.76601 1.84922 2.51412 2.77606 3.08739 3.28960 3.32157 3.61168 3.75385 3.78740 3.86844 3.93142 3.96708 4.08492 4.11451 4.20011 4.25482 4.36012 4.46379 4.47054 4.58755 4.61425 4.70623 4.77783 4.85416 4.88603 4.92215 4.96218 5.01974 5.10000 5.13291 5.17029 5.20011 5.29005 5.41322 5.52457 5.59059 5.66990 5.69228 6.28995 6.37868 6.89463 7.13109 7.82916 8.37758 9.20060 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.029411 B = 0.002665 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 951.804947 B =10505.474531 C =10739.735306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.577 4.577 3 S 2.418 3.582 4 O -0.983 6.983 5 O -0.981 6.981 6 C -0.643 4.643 7 C 0.521 3.479 8 O -0.596 6.596 9 N -0.592 5.592 10 C 0.093 3.907 11 C -0.128 4.128 12 C -0.100 4.100 13 C -0.106 4.106 14 H 0.054 0.946 15 C 0.187 3.813 16 N -0.600 5.600 17 C -0.254 4.254 18 H 0.072 0.928 19 C -0.052 4.052 20 N -0.940 5.940 21 Si 0.967 3.033 22 H -0.288 1.288 23 H -0.296 1.296 24 H -0.264 1.264 25 C 0.141 3.859 26 C -0.123 4.123 27 C 0.155 3.845 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.175 0.825 33 H 0.173 0.827 34 H 0.210 0.790 35 H 0.207 0.793 36 H 0.133 0.867 37 H 0.087 0.913 38 H 0.068 0.932 39 H 0.105 0.895 40 H 0.067 0.933 41 H 0.044 0.956 42 H 0.063 0.937 43 H -0.021 1.021 44 H 0.249 0.751 45 H 0.001 0.999 46 H 0.066 0.934 47 H 0.068 0.932 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 -26.435 -3.930 29.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.710 4.710 3 S 2.603 3.397 4 O -0.980 6.980 5 O -0.978 6.978 6 C -0.772 4.772 7 C 0.310 3.690 8 O -0.478 6.478 9 N -0.322 5.322 10 C -0.028 4.028 11 C -0.166 4.166 12 C -0.138 4.138 13 C -0.127 4.127 14 H 0.072 0.928 15 C 0.061 3.939 16 N -0.323 5.323 17 C -0.384 4.384 18 H 0.090 0.910 19 C -0.247 4.247 20 N -0.586 5.586 21 Si 0.795 3.205 22 H -0.215 1.215 23 H -0.222 1.222 24 H -0.189 1.189 25 C 0.015 3.985 26 C -0.163 4.163 27 C 0.051 3.949 28 H 0.077 0.923 29 H 0.131 0.869 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.193 0.807 33 H 0.191 0.809 34 H 0.227 0.773 35 H 0.224 0.776 36 H 0.151 0.849 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.124 0.876 40 H 0.086 0.914 41 H 0.063 0.937 42 H 0.081 0.919 43 H -0.003 1.003 44 H 0.058 0.942 45 H 0.019 0.981 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.562 -25.016 -3.818 28.711 hybrid contribution 1.420 0.783 0.508 1.700 sum -12.142 -24.233 -3.309 27.306 Atomic orbital electron populations 1.21740 0.91010 1.06469 1.03288 1.30026 1.06772 1.18606 1.15638 1.07991 0.77548 0.80363 0.73749 1.93514 1.81169 1.76044 1.47297 1.93509 1.81144 1.76002 1.47159 1.30794 1.25443 1.03085 1.17831 1.20124 0.83022 0.90010 0.75868 1.90846 1.65041 1.38885 1.53015 1.48418 1.04649 1.08524 1.70589 1.22278 0.94445 0.86013 1.00055 1.21993 0.98294 0.97650 0.98637 1.21412 0.96894 0.93308 1.02163 1.21828 0.96479 0.97960 0.96398 0.92790 1.20433 0.93809 0.90935 0.88752 1.44226 1.04388 1.82780 1.00930 1.19481 0.84080 1.31001 1.03821 0.91007 1.25832 1.02125 0.97256 0.99481 1.70216 1.35931 1.36215 1.16232 0.85281 0.80589 0.78225 0.76374 1.21536 1.22204 1.18863 1.20995 0.92980 0.94234 0.90317 1.22256 0.98700 0.99610 0.95688 1.21160 0.92810 0.84835 0.96066 0.92292 0.86866 0.91726 0.91610 0.80734 0.80882 0.77271 0.77595 0.84895 0.89474 0.91372 0.87630 0.91403 0.93671 0.91898 1.00322 0.94225 0.98087 0.91582 0.91374 0.89660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.92 71.98 0.71 -0.64 16 2 C -0.58 -2.45 6.52 71.98 0.47 -1.98 16 3 S 2.42 46.23 3.96 -56.49 -0.22 46.01 16 4 O -0.98 -29.42 17.95 -125.76 -2.26 -31.68 16 5 O -0.98 -28.76 17.94 -125.73 -2.26 -31.01 16 6 C -0.64 -7.83 4.64 71.24 0.33 -7.50 16 7 C 0.52 14.71 7.73 87.66 0.68 15.39 16 8 O -0.60 -24.34 15.07 -0.17 0.00 -24.35 16 9 N -0.59 -15.67 2.66 -793.23 -2.11 -17.78 16 10 C 0.09 1.44 5.84 86.34 0.50 1.95 16 11 C -0.13 -2.39 6.12 30.72 0.19 -2.20 16 12 C -0.10 -3.09 4.82 30.63 0.15 -2.94 16 13 C -0.11 -4.03 2.50 -10.86 -0.03 -4.05 16 14 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 15 C 0.19 9.29 4.70 86.23 0.41 9.69 16 16 N -0.60 -29.91 2.61 -700.06 -1.83 -31.74 16 17 C -0.25 -13.60 9.60 84.03 0.81 -12.80 16 18 H 0.07 3.69 7.88 -2.91 -0.02 3.67 16 19 C -0.05 -2.87 4.92 84.86 0.42 -2.46 16 20 N -0.94 -56.26 11.19 21.65 0.24 -56.01 16 21 Si 0.97 44.19 29.59 68.60 2.03 46.22 16 22 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 23 H -0.30 -13.66 7.11 99.48 0.71 -12.95 16 24 H -0.26 -11.27 7.11 99.48 0.71 -10.57 16 25 C 0.14 5.98 6.50 86.32 0.56 6.54 16 26 C -0.12 -4.16 5.03 30.80 0.16 -4.01 16 27 C 0.15 5.55 2.66 45.07 0.12 5.67 16 28 H 0.06 2.58 7.06 -2.39 -0.02 2.56 16 29 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.17 -0.56 8.14 -2.39 -0.02 -0.58 16 33 H 0.17 -0.50 8.14 -2.39 -0.02 -0.52 16 34 H 0.21 0.30 7.94 -2.39 -0.02 0.28 16 35 H 0.21 0.45 7.71 -2.39 -0.02 0.43 16 36 H 0.13 0.66 5.96 -2.38 -0.01 0.64 16 37 H 0.09 1.22 7.25 -2.39 -0.02 1.21 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.07 2.26 6.03 -2.39 -0.01 2.25 16 41 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.06 3.47 6.06 -2.39 -0.01 3.46 16 43 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 44 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 45 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 46 H 0.07 2.65 7.94 -2.39 -0.02 2.63 16 47 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 48 H 0.08 2.60 5.27 -2.39 -0.01 2.59 16 Total: -1.00 -94.73 378.92 0.02 -94.71 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: 0.95 Total: 4.96 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 5.47 Total: 0.67 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -3.69 Total: -105.53 kcal Atomic # 8 Polarization: -82.52 SS G_CDS: -4.52 Total: -87.04 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: 46.23 SS G_CDS: -0.22 Total: 46.01 kcal Total: -94.73 0.02 -94.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566827207.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.742 kcal (2) G-P(sol) polarization free energy of solvation -94.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds