Wall clock time and date at job start Sat Apr 11 2020 07:12:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46499 * 109.47450 * 2 1 4 4 C 1.34786 * 119.99758 * 270.00334 * 3 2 1 5 5 O 1.21281 * 119.99834 * 179.97438 * 4 3 2 6 6 C 1.50699 * 120.00040 * 359.97438 * 4 3 2 7 7 S 1.80995 * 109.47013 * 180.02562 * 6 4 3 8 8 C 1.76195 * 100.00033 * 180.02562 * 7 6 4 9 9 H 1.07998 * 120.00073 * 0.02562 * 8 7 6 10 10 C 1.38802 * 120.00410 * 180.02562 * 8 7 6 11 11 N 1.31630 * 119.99649 * 0.02562 * 10 8 7 12 12 Si 1.86796 * 120.00475 * 179.97438 * 10 8 7 13 13 H 1.48505 * 109.46979 * 59.99861 * 12 10 8 14 14 H 1.48502 * 109.47194 * 180.02562 * 12 10 8 15 15 H 1.48498 * 109.46980 * 300.00324 * 12 10 8 16 16 C 1.46499 * 120.00300 * 89.99284 * 3 2 1 17 17 H 1.09000 * 109.46985 * 180.02562 * 16 3 2 18 18 C 1.52997 * 109.46724 * 60.00689 * 16 3 2 19 19 C 1.52997 * 109.47156 * 300.00832 * 16 3 2 20 20 N 1.46503 * 109.46926 * 304.99572 * 19 16 3 21 21 C 1.34779 * 119.99752 * 180.02562 * 20 19 16 22 22 O 1.21284 * 119.99836 * 0.02562 * 21 20 19 23 23 C 1.50700 * 119.99616 * 179.97438 * 21 20 19 24 24 H 1.08994 * 110.90992 * 62.13759 * 23 21 20 25 25 C 1.55457 * 110.92154 * 185.75287 * 23 21 20 26 26 C 1.54947 * 100.98961 * 152.22952 * 25 23 21 27 27 O 1.43650 * 105.13275 * 323.60678 * 26 25 23 28 28 C 1.43233 * 109.97542 * 24.42908 * 27 26 25 29 29 H 1.08998 * 109.47551 * 300.00478 * 1 2 3 30 30 H 1.09007 * 109.46762 * 60.00425 * 1 2 3 31 31 H 1.09000 * 109.47361 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.47574 * 239.99791 * 2 1 3 33 33 H 1.09000 * 109.47071 * 119.99831 * 2 1 3 34 34 H 1.08996 * 109.47340 * 300.00597 * 6 4 3 35 35 H 1.09000 * 109.46764 * 60.00942 * 6 4 3 36 36 H 0.97002 * 119.99914 * 179.97438 * 11 10 8 37 37 H 1.09004 * 109.47175 * 180.02562 * 18 16 3 38 38 H 1.09000 * 109.47264 * 299.99675 * 18 16 3 39 39 H 1.08999 * 109.47688 * 60.00025 * 18 16 3 40 40 H 1.08998 * 109.46653 * 184.99757 * 19 16 3 41 41 H 1.08998 * 109.47626 * 64.99653 * 19 16 3 42 42 H 0.96995 * 120.00159 * 0.02562 * 20 19 16 43 43 H 1.08999 * 111.05650 * 34.31564 * 25 23 21 44 44 H 1.09001 * 111.18400 * 270.19747 * 25 23 21 45 45 H 1.08996 * 110.31348 * 204.69266 * 26 25 23 46 46 H 1.08998 * 110.39377 * 82.56129 * 26 25 23 47 47 H 1.09002 * 109.83312 * 117.80151 * 28 27 26 48 48 H 1.08996 * 109.82720 * 238.68562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2429 2.0165 -1.1673 5 8 2.6468 3.1601 -1.1673 6 6 1.9922 1.3059 -2.4724 7 16 2.3848 2.4146 -3.8481 8 6 2.0111 1.3587 -5.2082 9 1 1.6552 0.3546 -5.0305 10 6 2.1742 1.8172 -6.5081 11 7 2.6084 3.0408 -6.7248 12 14 1.7787 0.6975 -7.9501 13 1 0.3503 0.2960 -7.8878 14 1 2.0356 1.4193 -9.2222 15 1 2.6364 -0.5130 -7.8865 16 6 2.2624 2.0719 1.2687 17 1 2.6193 3.0824 1.0694 18 6 3.3170 1.3070 2.0710 19 6 0.9614 2.1398 2.0709 20 7 -0.0825 2.7664 1.2561 21 6 -1.3213 2.9335 1.7602 22 8 -1.5716 2.5656 2.8885 23 6 -2.3950 3.5786 0.9223 24 1 -2.6009 2.9864 0.0307 25 6 -3.6910 3.7967 1.7526 26 6 -4.3022 5.0232 1.0293 27 8 -3.1785 5.8347 0.6524 28 6 -2.0032 5.0232 0.5441 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8932 -0.5138 0.8900 34 1 2.6226 0.4186 -2.5299 35 1 0.9443 1.0116 -2.5302 36 1 2.7227 3.3611 -7.6332 37 1 3.4983 1.8207 3.0152 38 1 2.9598 0.2967 2.2702 39 1 4.2439 1.2586 1.4995 40 1 1.1214 2.7300 2.9732 41 1 0.6513 1.1318 2.3464 42 1 0.1178 3.0609 0.3540 43 1 -3.4562 4.0300 2.7911 44 1 -4.3515 2.9322 1.6862 45 1 -4.9567 5.5736 1.7051 46 1 -4.8537 4.7062 0.1441 47 1 -1.6290 5.0490 -0.4793 48 1 -1.2369 5.3893 1.2273 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001572667198.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:21 Heat of formation + Delta-G solvation = -119.699606 kcal Electronic energy + Delta-G solvation = -29112.139669 eV Core-core repulsion = 25100.450571 eV Total energy + Delta-G solvation = -4011.689098 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.75872 -39.93014 -38.60306 -36.75410 -34.58253 -32.95371 -32.48074 -32.32225 -30.16892 -29.68254 -28.71911 -26.62989 -25.53678 -23.66167 -23.36497 -22.44612 -21.72859 -20.28185 -19.13457 -17.84482 -17.77206 -17.15538 -16.98580 -16.44166 -16.03528 -15.44344 -15.19773 -15.07861 -14.87957 -14.84657 -14.22046 -13.89772 -13.82434 -13.60925 -13.50322 -13.37741 -13.23306 -12.94548 -12.67478 -12.47970 -12.36811 -12.21290 -12.06604 -11.78867 -11.75448 -11.54138 -11.25855 -11.10858 -11.09437 -11.05190 -11.01414 -10.80343 -10.16022 -9.86968 -9.72855 -9.50569 -9.27633 -9.10885 -8.73714 -8.30148 -6.56661 -6.26734 -3.98089 2.35695 2.73185 2.88611 2.92781 3.19485 3.21174 3.25306 3.50648 3.60218 3.98766 4.15237 4.39883 4.45593 4.61495 4.74134 4.80844 4.82372 4.89347 4.93239 4.96712 5.01688 5.08425 5.16779 5.23044 5.30663 5.37532 5.39762 5.43604 5.45875 5.48544 5.52278 5.59641 5.65690 5.70580 5.81790 5.82858 5.84800 5.92391 6.00546 6.16041 6.18200 6.56124 6.67927 7.24121 7.39339 7.54175 7.94995 8.29596 8.40519 9.18703 10.80508 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009792 B = 0.003263 C = 0.002724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2858.748036 B = 8578.380903 C =10275.401504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.105 3.895 3 N -0.615 5.615 4 C 0.533 3.467 5 O -0.515 6.515 6 C -0.151 4.151 7 S -0.060 6.060 8 C -0.537 4.537 9 H 0.071 0.929 10 C 0.075 3.925 11 N -0.867 5.867 12 Si 0.917 3.083 13 H -0.274 1.274 14 H -0.282 1.282 15 H -0.274 1.274 16 C 0.123 3.877 17 H 0.110 0.890 18 C -0.158 4.158 19 C 0.110 3.890 20 N -0.720 5.720 21 C 0.528 3.472 22 O -0.540 6.540 23 C -0.150 4.150 24 H 0.114 0.886 25 C -0.134 4.134 26 C 0.049 3.951 27 O -0.379 6.379 28 C 0.062 3.938 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.063 0.937 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.269 0.731 37 H 0.069 0.931 38 H 0.061 0.939 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.407 0.593 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.088 0.912 46 H 0.064 0.936 47 H 0.083 0.917 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.912 -4.224 18.624 20.671 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.018 4.018 3 N -0.352 5.352 4 C 0.321 3.679 5 O -0.389 6.389 6 C -0.302 4.302 7 S 0.167 5.833 8 C -0.685 4.685 9 H 0.090 0.910 10 C -0.134 4.134 11 N -0.502 5.502 12 Si 0.744 3.256 13 H -0.199 1.199 14 H -0.208 1.208 15 H -0.199 1.199 16 C 0.019 3.981 17 H 0.128 0.872 18 C -0.216 4.216 19 C -0.015 4.015 20 N -0.372 5.372 21 C 0.313 3.687 22 O -0.417 6.417 23 C -0.171 4.171 24 H 0.132 0.868 25 C -0.172 4.172 26 C -0.027 4.027 27 O -0.298 6.298 28 C -0.015 4.015 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.080 0.920 39 H 0.087 0.913 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.242 0.758 43 H 0.109 0.891 44 H 0.106 0.894 45 H 0.106 0.894 46 H 0.082 0.918 47 H 0.101 0.899 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.420 -2.430 19.257 20.780 hybrid contribution -0.589 -2.388 -1.439 2.849 sum -8.009 -4.818 17.818 20.121 Atomic orbital electron populations 1.22423 0.96034 1.02329 1.03031 1.21513 0.94393 0.82530 1.03336 1.48113 1.67580 1.14400 1.05093 1.20436 0.76272 0.86537 0.84657 1.90710 1.43942 1.17521 1.86724 1.23590 1.04764 1.04628 0.97188 1.85386 1.86925 1.17686 0.93295 1.22802 1.52002 1.01511 0.92211 0.91037 1.24976 0.94587 0.95516 0.98349 1.70000 1.42698 1.15651 1.21832 0.86244 0.78964 0.80067 0.80360 1.19928 1.20775 1.19940 1.21280 0.93862 0.99237 0.83735 0.87237 1.22055 0.98839 1.00530 1.00180 1.21815 0.86839 0.98808 0.94016 1.46023 1.10229 1.61890 1.19018 1.20142 0.82850 0.78574 0.87084 1.90698 1.81396 1.50507 1.19141 1.22979 0.95486 0.98345 1.00329 0.86770 1.23174 0.94485 0.98925 1.00568 1.23444 0.89468 0.91292 0.98524 1.88435 1.17271 1.33408 1.90690 1.23090 0.88799 0.87296 1.02297 0.91674 0.92139 0.91777 0.89859 0.90443 0.89282 0.89257 0.92082 0.91171 0.92028 0.91328 0.90495 0.90836 0.75756 0.89057 0.89371 0.89380 0.91765 0.89901 0.90853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 9.65 37.15 0.36 -1.32 16 2 C 0.11 1.00 5.38 -4.05 -0.02 0.98 16 3 N -0.62 -7.26 1.88 -166.11 -0.31 -7.57 16 4 C 0.53 8.84 7.40 -10.98 -0.08 8.76 16 5 O -0.51 -10.37 15.19 5.56 0.08 -10.29 16 6 C -0.15 -2.82 4.71 36.01 0.17 -2.65 16 7 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 8 C -0.54 -14.73 9.50 30.94 0.29 -14.44 16 9 H 0.07 1.86 7.80 -52.49 -0.41 1.45 16 10 C 0.08 2.08 5.49 -17.43 -0.10 1.99 16 11 N -0.87 -25.46 13.22 55.49 0.73 -24.73 16 12 Si 0.92 20.85 29.55 -169.99 -5.02 15.83 16 13 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 14 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 15 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 16 C 0.12 1.25 2.80 -67.93 -0.19 1.06 16 17 H 0.11 1.34 6.90 -51.93 -0.36 0.98 16 18 C -0.16 -1.26 9.17 37.16 0.34 -0.92 16 19 C 0.11 1.05 4.30 -4.04 -0.02 1.03 16 20 N -0.72 -7.55 3.94 -60.29 -0.24 -7.78 16 21 C 0.53 5.99 6.75 -10.98 -0.07 5.92 16 22 O -0.54 -7.63 15.77 5.55 0.09 -7.54 16 23 C -0.15 -1.46 3.40 -89.74 -0.31 -1.77 16 24 H 0.11 0.99 8.14 -51.93 -0.42 0.56 16 25 C -0.13 -1.20 6.24 -24.40 -0.15 -1.35 16 26 C 0.05 0.43 7.78 38.18 0.30 0.73 16 27 O -0.38 -4.53 11.36 -35.23 -0.40 -4.93 16 28 C 0.06 0.67 7.34 37.88 0.28 0.95 16 29 H 0.06 0.63 4.50 -51.93 -0.23 0.40 16 30 H 0.06 0.64 7.22 -51.92 -0.38 0.27 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.08 0.83 6.44 -51.93 -0.33 0.49 16 33 H 0.08 0.59 6.43 -51.93 -0.33 0.25 16 34 H 0.09 1.57 7.40 -51.92 -0.38 1.18 16 35 H 0.09 1.54 7.19 -51.92 -0.37 1.17 16 36 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.43 6.66 -51.93 -0.35 0.08 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 41 H 0.07 0.69 6.62 -51.93 -0.34 0.35 16 42 H 0.41 4.58 7.86 -40.82 -0.32 4.25 16 43 H 0.09 0.93 7.47 -51.93 -0.39 0.55 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 48 H 0.07 0.80 7.80 -51.93 -0.41 0.39 16 LS Contribution 394.62 15.07 5.95 5.95 Total: -1.00 -33.98 394.62 -8.08 -42.05 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.55 Total: 3.80 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 0.80 Total: -1.03 kcal Atomic # 7 Polarization: -40.27 SS G_CDS: 0.18 Total: -40.08 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.23 Total: -22.77 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.98 -8.08 -42.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001572667198.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.646 kcal (2) G-P(sol) polarization free energy of solvation -33.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds