Wall clock time and date at job start Sat Apr 11 2020 07:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42909 * 109.46860 * 2 1 4 4 C 1.42901 * 113.99487 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.47612 * 329.99632 * 4 3 2 6 6 C 1.52994 * 109.47167 * 90.00035 * 4 3 2 7 7 C 1.50701 * 109.46579 * 209.99519 * 4 3 2 8 8 O 1.21288 * 120.00180 * 0.02562 * 7 4 3 9 9 N 1.34779 * 119.99990 * 180.02562 * 7 4 3 10 10 C 1.46505 * 120.00103 * 180.02562 * 9 7 4 11 11 C 1.52995 * 109.46751 * 179.97438 * 10 9 7 12 12 H 1.09000 * 112.85307 * 43.80543 * 11 10 9 13 13 C 1.53791 * 113.60994 * 174.99733 * 11 10 9 14 14 C 1.53786 * 87.07966 * 139.97886 * 13 11 10 15 15 H 1.08998 * 113.60870 * 89.19954 * 14 13 11 16 16 N 1.46499 * 113.61394 * 220.01815 * 14 13 11 17 17 C 1.34777 * 119.99665 * 205.27970 * 16 14 13 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 14 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 14 20 20 S 1.81005 * 109.46906 * 179.97438 * 19 17 16 21 21 C 1.76201 * 99.99828 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00390 * 359.97438 * 21 20 19 23 23 C 1.38797 * 119.99869 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99970 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00277 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46770 * 60.00115 * 25 23 21 27 27 H 1.48499 * 109.47505 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46733 * 300.00357 * 25 23 21 29 29 C 1.53778 * 87.08287 * 334.56878 * 14 13 11 30 30 H 1.08991 * 109.47489 * 300.00241 * 1 2 3 31 31 H 1.09005 * 109.46748 * 60.00869 * 1 2 3 32 32 H 1.08996 * 109.46694 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47489 * 239.99759 * 2 1 3 34 34 H 1.09005 * 109.46748 * 119.99131 * 2 1 3 35 35 H 1.09001 * 109.47438 * 179.97438 * 6 4 3 36 36 H 1.09002 * 109.46988 * 299.99179 * 6 4 3 37 37 H 1.09000 * 109.47302 * 59.99691 * 6 4 3 38 38 H 0.96996 * 120.00100 * 359.97438 * 9 7 4 39 39 H 1.09000 * 109.47102 * 59.99658 * 10 9 7 40 40 H 1.09005 * 109.46664 * 299.99526 * 10 9 7 41 41 H 1.08999 * 113.61698 * 25.43239 * 13 11 10 42 42 H 1.08999 * 113.68992 * 254.53765 * 13 11 10 43 43 H 0.97001 * 119.99790 * 24.99683 * 16 14 13 44 44 H 1.09003 * 109.47112 * 299.99065 * 19 17 16 45 45 H 1.08993 * 109.47916 * 59.99687 * 19 17 16 46 46 H 0.97008 * 120.00004 * 179.97438 * 24 23 21 47 47 H 1.08997 * 113.61721 * 139.97826 * 29 14 13 48 48 H 1.09004 * 113.61436 * 270.88721 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6018 0.5147 6 6 3.9399 1.5002 -1.4416 7 6 3.8341 2.7266 0.7109 8 8 2.9851 3.4601 1.1717 9 7 5.1381 3.0442 0.8341 10 6 5.5302 4.2751 1.5252 11 6 7.0553 4.3959 1.5257 12 1 7.4998 4.1503 0.5612 13 6 7.5683 5.7176 2.1216 14 6 8.6830 4.8936 2.7875 15 1 9.5740 4.7845 2.1692 16 7 8.9886 5.3178 4.1561 17 6 10.2083 5.0812 4.6783 18 8 11.0512 4.5127 4.0171 19 6 10.5246 5.5231 6.0839 20 16 12.2276 5.0646 6.4916 21 6 12.3248 5.6828 8.1387 22 1 11.4704 6.1711 8.5837 23 6 13.4996 5.5424 8.8645 24 7 14.5412 4.9477 8.3220 25 14 13.6030 6.1983 10.6105 26 1 12.5791 5.5288 11.4522 27 1 14.9542 5.9252 11.1627 28 1 13.3581 7.6630 10.6042 29 6 7.7289 3.6898 2.7143 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 5.0265 1.5867 -1.4413 36 1 3.6482 0.5842 -1.9554 37 1 3.5076 2.3586 -1.9558 38 1 5.8171 2.4574 0.4660 39 1 5.1679 4.2460 2.5528 40 1 5.0975 5.1337 1.0115 41 1 6.8784 6.1733 2.8319 42 1 7.9333 6.4224 1.3745 43 1 8.3144 5.7725 4.6848 44 1 10.4114 6.6046 6.1590 45 1 9.8413 5.0370 6.7802 46 1 15.3624 4.8499 8.8291 47 1 8.2232 2.7566 2.4446 48 1 7.0827 3.5911 3.5866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573134709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:28 Heat of formation + Delta-G solvation = -111.831889 kcal Electronic energy + Delta-G solvation = -26419.552764 eV Core-core repulsion = 22408.204835 eV Total energy + Delta-G solvation = -4011.347928 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -40.57888 -39.91208 -38.43676 -37.92806 -35.02639 -33.36012 -32.74499 -32.43530 -30.69781 -29.42762 -27.77490 -26.00758 -25.50521 -24.83864 -23.22393 -22.58518 -20.95353 -20.42967 -19.79889 -17.84830 -17.80383 -17.52043 -16.55001 -16.39372 -16.13496 -15.90953 -15.72713 -15.15312 -14.87514 -14.81190 -14.69227 -14.05215 -14.02776 -13.71000 -13.45891 -13.24485 -13.02708 -12.79348 -12.76207 -12.70857 -12.51889 -12.45044 -12.34900 -11.88423 -11.84043 -11.57240 -11.49304 -11.06174 -11.04630 -10.98196 -10.78430 -10.66856 -10.39869 -9.86640 -9.82275 -9.46003 -9.39698 -9.07064 -8.88013 -8.25519 -6.51168 -6.22449 -3.93218 2.22691 2.40946 3.02938 3.04279 3.23046 3.27170 3.30928 3.39785 3.71000 4.11470 4.17250 4.19910 4.28228 4.36332 4.43378 4.46320 4.59221 4.62815 4.72333 4.83616 4.86259 4.90861 5.08161 5.12585 5.12751 5.20053 5.24914 5.34099 5.42346 5.42572 5.47229 5.52076 5.54471 5.67749 5.69145 5.74570 5.76066 5.87877 5.99586 6.12350 6.14772 6.57744 6.64514 7.07632 7.58474 7.69500 7.83378 8.34169 8.58935 9.22847 10.84905 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023612 B = 0.001425 C = 0.001395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.552622 B =19639.512687 C =20061.124152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.054 3.946 3 O -0.359 6.359 4 C 0.070 3.930 5 H 0.088 0.912 6 C -0.171 4.171 7 C 0.513 3.487 8 O -0.519 6.519 9 N -0.726 5.726 10 C 0.133 3.867 11 C -0.123 4.123 12 H 0.101 0.899 13 C -0.136 4.136 14 C 0.127 3.873 15 H 0.116 0.884 16 N -0.729 5.729 17 C 0.533 3.467 18 O -0.518 6.518 19 C -0.155 4.155 20 S -0.060 6.060 21 C -0.537 4.537 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.918 3.082 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 C -0.148 4.148 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.071 0.929 38 H 0.401 0.599 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.399 0.601 44 H 0.090 0.910 45 H 0.089 0.911 46 H 0.269 0.731 47 H 0.073 0.927 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.286 -7.397 -20.050 32.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.277 6.277 4 C 0.009 3.991 5 H 0.105 0.895 6 C -0.229 4.229 7 C 0.297 3.703 8 O -0.393 6.393 9 N -0.381 5.381 10 C 0.010 3.990 11 C -0.142 4.142 12 H 0.119 0.881 13 C -0.175 4.175 14 C 0.021 3.979 15 H 0.133 0.867 16 N -0.382 5.382 17 C 0.319 3.681 18 O -0.392 6.392 19 C -0.306 4.306 20 S 0.166 5.834 21 C -0.685 4.685 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.199 1.199 29 C -0.187 4.187 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.090 0.910 38 H 0.236 0.764 39 H 0.089 0.911 40 H 0.089 0.911 41 H 0.108 0.892 42 H 0.097 0.903 43 H 0.233 0.767 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.079 0.921 47 H 0.092 0.908 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -23.431 -7.701 -20.776 32.249 hybrid contribution -0.702 0.727 1.974 2.218 sum -24.134 -6.974 -18.802 31.378 Atomic orbital electron populations 1.21732 0.93304 1.02332 1.03476 1.22612 0.96088 0.83351 1.00160 1.88062 1.18188 1.26513 1.94925 1.21875 0.84024 0.96500 0.96713 0.89462 1.22247 1.01614 1.03924 0.95075 1.20403 0.82595 0.87313 0.79963 1.90741 1.50143 1.51289 1.47172 1.45937 1.06988 1.25696 1.59435 1.21376 0.93658 0.86370 0.97610 1.22629 0.93755 0.98384 0.99466 0.88130 1.23338 0.97726 0.96184 1.00220 1.22354 0.97110 0.94274 0.84135 0.86651 1.45992 1.14954 1.62282 1.14930 1.20354 0.81218 0.78033 0.88452 1.90691 1.46619 1.40366 1.61566 1.23546 1.07513 1.04430 0.95061 1.85376 1.03751 1.77223 1.17017 1.22831 1.01879 1.44373 0.99413 0.90978 1.24984 0.94672 0.94909 0.98932 1.70010 1.02773 1.40154 1.37381 0.86229 0.77475 0.79320 0.82511 1.19938 1.20793 1.19929 1.23604 0.98495 0.98845 0.97777 0.91585 0.91737 0.90923 0.93137 0.93132 0.90875 0.91128 0.91012 0.76438 0.91083 0.91145 0.89208 0.90295 0.76701 0.89201 0.89231 0.92126 0.90777 0.89463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 10.28 37.16 0.38 -0.44 16 2 C 0.05 0.33 6.47 37.16 0.24 0.57 16 3 O -0.36 -3.34 9.52 -55.14 -0.52 -3.87 16 4 C 0.07 0.49 3.14 -27.89 -0.09 0.40 16 5 H 0.09 0.41 7.79 -51.93 -0.40 0.00 16 6 C -0.17 -0.77 9.42 37.15 0.35 -0.42 16 7 C 0.51 4.84 7.23 -10.98 -0.08 4.76 16 8 O -0.52 -7.42 16.50 -14.36 -0.24 -7.66 16 9 N -0.73 -4.77 5.45 -60.29 -0.33 -5.10 16 10 C 0.13 0.95 5.51 -4.04 -0.02 0.92 16 11 C -0.12 -0.76 3.76 -89.80 -0.34 -1.10 16 12 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 13 C -0.14 -0.96 7.39 -25.91 -0.19 -1.15 16 14 C 0.13 1.31 4.24 -67.12 -0.28 1.02 16 15 H 0.12 1.40 7.46 -51.93 -0.39 1.02 16 16 N -0.73 -9.09 5.35 -53.02 -0.28 -9.38 16 17 C 0.53 9.61 7.85 -10.99 -0.09 9.53 16 18 O -0.52 -11.41 15.46 5.55 0.09 -11.33 16 19 C -0.15 -3.07 6.16 36.00 0.22 -2.85 16 20 S -0.06 -1.62 20.57 -107.50 -2.21 -3.83 16 21 C -0.54 -15.23 9.50 30.94 0.29 -14.94 16 22 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 23 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 24 N -0.87 -26.06 13.22 55.49 0.73 -25.33 16 25 Si 0.92 21.32 29.55 -169.99 -5.02 16.29 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 28 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 29 C -0.15 -1.23 7.43 -25.92 -0.19 -1.43 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.22 7.87 -51.93 -0.41 -0.19 16 34 H 0.05 0.26 8.08 -51.93 -0.42 -0.16 16 35 H 0.07 0.19 7.56 -51.93 -0.39 -0.20 16 36 H 0.07 0.25 7.87 -51.93 -0.41 -0.16 16 37 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.40 1.54 7.89 -40.82 -0.32 1.22 16 39 H 0.07 0.59 7.84 -51.93 -0.41 0.19 16 40 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 0.58 8.08 -51.93 -0.42 0.16 16 42 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 43 H 0.40 3.88 8.73 -40.82 -0.36 3.52 16 44 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 45 H 0.09 1.64 8.14 -51.92 -0.42 1.22 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.09 0.75 7.89 -51.93 -0.41 0.34 16 LS Contribution 415.43 15.07 6.26 6.26 Total: -1.00 -37.99 415.43 -9.53 -47.52 By element: Atomic # 1 Polarization: 7.63 SS G_CDS: -8.11 Total: -0.48 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 0.11 Total: -3.10 kcal Atomic # 7 Polarization: -39.92 SS G_CDS: 0.12 Total: -39.80 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.68 Total: -22.85 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.29 kcal Atomic # 16 Polarization: -1.62 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -37.99 -9.53 -47.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573134709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.316 kcal (2) G-P(sol) polarization free energy of solvation -37.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds