Wall clock time and date at job start Sat Apr 11 2020 07:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42909 * 109.46860 * 2 1 4 4 C 1.42901 * 113.99487 * 179.97438 * 3 2 1 5 5 H 1.08992 * 109.47612 * 329.99632 * 4 3 2 6 6 C 1.52994 * 109.47167 * 90.00035 * 4 3 2 7 7 C 1.50701 * 109.46579 * 209.99519 * 4 3 2 8 8 O 1.21288 * 120.00180 * 0.02562 * 7 4 3 9 9 N 1.34779 * 119.99990 * 180.02562 * 7 4 3 10 10 C 1.46505 * 120.00103 * 180.02562 * 9 7 4 11 11 C 1.52995 * 109.46751 * 179.97438 * 10 9 7 12 12 H 1.09000 * 112.85307 * 43.80543 * 11 10 9 13 13 C 1.53791 * 113.60994 * 174.99733 * 11 10 9 14 14 C 1.53786 * 87.07966 * 139.97886 * 13 11 10 15 15 H 1.08998 * 113.60870 * 89.19954 * 14 13 11 16 16 N 1.46499 * 113.61394 * 220.01815 * 14 13 11 17 17 C 1.34777 * 119.99665 * 205.27970 * 16 14 13 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 14 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 14 20 20 S 1.81005 * 109.46906 * 179.97438 * 19 17 16 21 21 C 1.76201 * 99.99828 * 179.97438 * 20 19 17 22 22 H 1.07994 * 120.00390 * 359.97438 * 21 20 19 23 23 C 1.38797 * 119.99869 * 179.97438 * 21 20 19 24 24 N 1.31633 * 119.99970 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 120.00277 * 179.97438 * 23 21 20 26 26 H 1.48503 * 109.46770 * 60.00115 * 25 23 21 27 27 H 1.48499 * 109.47505 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46733 * 300.00357 * 25 23 21 29 29 C 1.53778 * 87.08287 * 334.56878 * 14 13 11 30 30 H 1.08991 * 109.47489 * 300.00241 * 1 2 3 31 31 H 1.09005 * 109.46748 * 60.00869 * 1 2 3 32 32 H 1.08996 * 109.46694 * 179.97438 * 1 2 3 33 33 H 1.08991 * 109.47489 * 239.99759 * 2 1 3 34 34 H 1.09005 * 109.46748 * 119.99131 * 2 1 3 35 35 H 1.09001 * 109.47438 * 179.97438 * 6 4 3 36 36 H 1.09002 * 109.46988 * 299.99179 * 6 4 3 37 37 H 1.09000 * 109.47302 * 59.99691 * 6 4 3 38 38 H 0.96996 * 120.00100 * 359.97438 * 9 7 4 39 39 H 1.09000 * 109.47102 * 59.99658 * 10 9 7 40 40 H 1.09005 * 109.46664 * 299.99526 * 10 9 7 41 41 H 1.08999 * 113.61698 * 25.43239 * 13 11 10 42 42 H 1.08999 * 113.68992 * 254.53765 * 13 11 10 43 43 H 0.97001 * 119.99790 * 24.99683 * 16 14 13 44 44 H 1.09003 * 109.47112 * 299.99065 * 19 17 16 45 45 H 1.08993 * 109.47916 * 59.99687 * 19 17 16 46 46 H 0.97008 * 120.00004 * 179.97438 * 24 23 21 47 47 H 1.08997 * 113.61721 * 139.97826 * 29 14 13 48 48 H 1.09004 * 113.61436 * 270.88721 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8631 0.6018 0.5147 6 6 3.9399 1.5002 -1.4416 7 6 3.8341 2.7266 0.7109 8 8 2.9851 3.4601 1.1717 9 7 5.1381 3.0442 0.8341 10 6 5.5302 4.2751 1.5252 11 6 7.0553 4.3959 1.5257 12 1 7.4998 4.1503 0.5612 13 6 7.5683 5.7176 2.1216 14 6 8.6830 4.8936 2.7875 15 1 9.5740 4.7845 2.1692 16 7 8.9886 5.3178 4.1561 17 6 10.2083 5.0812 4.6783 18 8 11.0512 4.5127 4.0171 19 6 10.5246 5.5231 6.0839 20 16 12.2276 5.0646 6.4916 21 6 12.3248 5.6828 8.1387 22 1 11.4704 6.1711 8.5837 23 6 13.4996 5.5424 8.8645 24 7 14.5412 4.9477 8.3220 25 14 13.6030 6.1983 10.6105 26 1 12.5791 5.5288 11.4522 27 1 14.9542 5.9252 11.1627 28 1 13.3581 7.6630 10.6042 29 6 7.7289 3.6898 2.7143 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8901 32 1 -0.3632 -1.0277 -0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 5.0265 1.5867 -1.4413 36 1 3.6482 0.5842 -1.9554 37 1 3.5076 2.3586 -1.9558 38 1 5.8171 2.4574 0.4660 39 1 5.1679 4.2460 2.5528 40 1 5.0975 5.1337 1.0115 41 1 6.8784 6.1733 2.8319 42 1 7.9333 6.4224 1.3745 43 1 8.3144 5.7725 4.6848 44 1 10.4114 6.6046 6.1590 45 1 9.8413 5.0370 6.7802 46 1 15.3624 4.8499 8.8291 47 1 8.2232 2.7566 2.4446 48 1 7.0827 3.5911 3.5866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573134709.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:27 Heat of formation + Delta-G solvation = -139.622265 kcal Electronic energy + Delta-G solvation = -26420.757845 eV Core-core repulsion = 22408.204835 eV Total energy + Delta-G solvation = -4012.553009 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.34163 -40.83130 -39.44436 -38.65077 -35.83779 -34.59021 -34.40072 -33.30274 -31.25500 -30.74589 -28.57320 -27.64700 -26.65767 -25.38727 -23.74474 -23.34592 -21.66680 -21.60873 -20.58699 -19.72654 -18.47331 -18.09012 -17.80083 -17.28180 -16.92075 -16.87370 -16.64815 -16.41456 -16.33224 -15.89192 -15.72830 -15.30673 -14.76785 -14.61395 -14.50146 -14.23467 -14.07170 -13.67614 -13.40262 -13.39693 -13.26193 -13.20486 -13.16817 -12.92675 -12.87162 -12.85377 -12.65375 -12.30241 -12.22938 -12.03568 -11.75044 -11.67501 -11.37369 -11.12838 -11.00031 -10.86609 -10.46796 -10.27958 -10.12359 -9.97636 -8.66226 -8.34480 -6.12500 1.27766 1.43826 1.47309 1.54281 1.57327 1.61726 1.86017 2.27177 2.35896 2.92006 2.99631 3.32649 3.49808 3.52941 3.74372 3.81184 3.87716 3.92283 4.00195 4.02597 4.18918 4.28001 4.31579 4.31687 4.47327 4.47912 4.51891 4.60951 4.70637 4.78909 4.80588 4.86676 4.88873 4.90456 5.00764 5.06370 5.12218 5.20231 5.25848 5.29337 5.41617 5.44795 5.65114 6.11612 6.19606 6.53908 6.54846 7.06847 7.20792 7.27766 8.74439 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023612 B = 0.001425 C = 0.001395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.552622 B =19639.512687 C =20061.124152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.394 6.394 4 C 0.068 3.932 5 H 0.113 0.887 6 C -0.165 4.165 7 C 0.507 3.493 8 O -0.577 6.577 9 N -0.711 5.711 10 C 0.135 3.865 11 C -0.101 4.101 12 H 0.120 0.880 13 C -0.123 4.123 14 C 0.109 3.891 15 H 0.096 0.904 16 N -0.704 5.704 17 C 0.535 3.465 18 O -0.566 6.566 19 C -0.132 4.132 20 S -0.150 6.150 21 C -0.549 4.549 22 H 0.082 0.918 23 C 0.015 3.985 24 N -0.911 5.911 25 Si 0.997 3.003 26 H -0.263 1.263 27 H -0.278 1.278 28 H -0.262 1.262 29 C -0.145 4.145 30 H 0.049 0.951 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.071 0.929 34 H 0.057 0.943 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.054 0.946 38 H 0.417 0.583 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.089 0.911 43 H 0.415 0.585 44 H 0.109 0.891 45 H 0.108 0.892 46 H 0.271 0.729 47 H 0.071 0.929 48 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.667 -7.411 -20.251 33.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.028 4.028 3 O -0.313 6.313 4 C 0.007 3.993 5 H 0.130 0.870 6 C -0.223 4.223 7 C 0.294 3.706 8 O -0.456 6.456 9 N -0.365 5.365 10 C 0.012 3.988 11 C -0.120 4.120 12 H 0.138 0.862 13 C -0.162 4.162 14 C 0.004 3.996 15 H 0.114 0.886 16 N -0.356 5.356 17 C 0.321 3.679 18 O -0.444 6.444 19 C -0.283 4.283 20 S 0.077 5.923 21 C -0.697 4.697 22 H 0.100 0.900 23 C -0.190 4.190 24 N -0.547 5.547 25 Si 0.819 3.181 26 H -0.187 1.187 27 H -0.203 1.203 28 H -0.187 1.187 29 C -0.183 4.183 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.112 0.888 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.114 0.886 36 H 0.103 0.897 37 H 0.073 0.927 38 H 0.255 0.745 39 H 0.078 0.922 40 H 0.085 0.915 41 H 0.120 0.880 42 H 0.107 0.893 43 H 0.253 0.747 44 H 0.127 0.873 45 H 0.126 0.874 46 H 0.080 0.920 47 H 0.090 0.910 48 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -24.839 -7.720 -21.008 33.435 hybrid contribution -0.369 0.719 1.951 2.111 sum -25.208 -7.002 -19.057 32.367 Atomic orbital electron populations 1.21771 0.93353 1.03399 1.02393 1.22806 0.96201 0.82315 1.01455 1.88025 1.19651 1.28480 1.95184 1.22057 0.83364 0.95786 0.98061 0.86974 1.22239 1.02857 1.03918 0.93241 1.20996 0.82716 0.87675 0.79239 1.90711 1.51769 1.53284 1.49813 1.45837 1.06657 1.25584 1.58406 1.21309 0.93985 0.86501 0.97023 1.22495 0.92855 0.97178 0.99466 0.86240 1.23313 0.96155 0.96495 1.00233 1.22632 0.97557 0.96851 0.82525 0.88601 1.45791 1.13190 1.60730 1.15903 1.20061 0.82438 0.77873 0.87571 1.90679 1.48488 1.42869 1.62374 1.23402 1.02416 1.05650 0.96870 1.85532 1.10621 1.78275 1.17868 1.23182 1.02523 1.44389 0.99593 0.90005 1.26102 0.94084 0.94913 1.03863 1.70176 1.03510 1.41612 1.39415 0.85026 0.77783 0.79017 0.76310 1.18719 1.20333 1.18696 1.23572 0.97903 0.98029 0.98828 0.93191 0.92281 0.88768 0.91089 0.92427 0.88580 0.89693 0.92684 0.74548 0.92191 0.91501 0.88043 0.89263 0.74746 0.87323 0.87409 0.91979 0.91042 0.89428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 71.98 0.74 -0.82 16 2 C 0.05 0.52 6.47 71.98 0.47 0.98 16 3 O -0.39 -7.16 9.52 -129.94 -1.24 -8.39 16 4 C 0.07 0.84 3.14 29.85 0.09 0.93 16 5 H 0.11 0.77 7.79 -2.39 -0.02 0.75 16 6 C -0.16 -1.13 9.42 71.98 0.68 -0.45 16 7 C 0.51 9.16 7.23 87.66 0.63 9.79 16 8 O -0.58 -16.77 16.50 15.98 0.26 -16.51 16 9 N -0.71 -7.95 5.45 -463.04 -2.52 -10.48 16 10 C 0.14 1.67 5.51 86.38 0.48 2.14 16 11 C -0.10 -0.97 3.76 -10.26 -0.04 -1.01 16 12 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 13 C -0.12 -1.41 7.39 31.13 0.23 -1.18 16 14 C 0.11 2.07 4.24 45.52 0.19 2.26 16 15 H 0.10 2.28 7.46 -2.39 -0.02 2.26 16 16 N -0.70 -16.39 5.35 -440.04 -2.36 -18.75 16 17 C 0.53 19.04 7.85 87.66 0.69 19.73 16 18 O -0.57 -25.42 15.46 -3.04 -0.05 -25.47 16 19 C -0.13 -5.15 6.16 71.24 0.44 -4.71 16 20 S -0.15 -8.28 20.57 -56.49 -1.16 -9.45 16 21 C -0.55 -31.29 9.50 67.95 0.65 -30.65 16 22 H 0.08 4.32 7.80 -2.91 -0.02 4.30 16 23 C 0.02 0.87 5.49 84.86 0.47 1.33 16 24 N -0.91 -55.76 13.22 21.65 0.29 -55.48 16 25 Si 1.00 43.40 29.55 68.60 2.03 45.43 16 26 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 27 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 28 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 29 C -0.14 -2.12 7.43 31.12 0.23 -1.89 16 30 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.09 0.51 8.14 -2.39 -0.02 0.50 16 33 H 0.07 0.45 7.87 -2.39 -0.02 0.43 16 34 H 0.06 0.51 8.08 -2.38 -0.02 0.49 16 35 H 0.10 0.18 7.56 -2.39 -0.02 0.17 16 36 H 0.08 0.36 7.87 -2.39 -0.02 0.34 16 37 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.42 1.98 7.89 -92.71 -0.73 1.25 16 39 H 0.06 0.91 7.84 -2.39 -0.02 0.90 16 40 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 41 H 0.10 0.98 8.08 -2.39 -0.02 0.96 16 42 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.42 6.99 8.73 -92.71 -0.81 6.18 16 44 H 0.11 3.82 8.14 -2.39 -0.02 3.80 16 45 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 46 H 0.27 15.44 8.31 -92.70 -0.77 14.67 16 47 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.09 1.32 7.89 -2.39 -0.02 1.30 16 Total: -1.00 -87.06 415.43 0.62 -86.44 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: -0.58 Total: 16.19 kcal Atomic # 6 Polarization: -9.48 SS G_CDS: 5.94 Total: -3.54 kcal Atomic # 7 Polarization: -80.11 SS G_CDS: -4.59 Total: -84.70 kcal Atomic # 8 Polarization: -49.35 SS G_CDS: -1.02 Total: -50.37 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: -8.28 SS G_CDS: -1.16 Total: -9.45 kcal Total: -87.06 0.62 -86.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573134709.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.184 kcal (2) G-P(sol) polarization free energy of solvation -87.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds