Wall clock time and date at job start Sat Apr 11 2020 07:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.47239 * 2 1 4 4 C 1.42898 * 114.00273 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47394 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99855 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00026 * 180.02562 * 5 4 3 8 8 C 1.46500 * 119.99850 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47150 * 179.97438 * 8 7 5 10 10 C 1.53346 * 109.41904 * 295.13157 * 9 8 7 11 11 C 1.53195 * 109.14901 * 178.67276 * 10 9 8 12 12 N 1.46919 * 108.89273 * 54.57640 * 11 10 9 13 13 C 1.34778 * 120.63255 * 126.34238 * 12 11 10 14 14 O 1.21279 * 120.00169 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00023 * 179.97438 * 13 12 11 16 16 S 1.81004 * 109.47124 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00170 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99808 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99850 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00032 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99655 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47451 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47165 * 119.99882 * 21 19 17 24 24 H 1.48501 * 109.46985 * 240.00093 * 21 19 17 25 25 C 1.46933 * 118.74003 * 306.32349 * 12 11 10 26 26 C 1.53034 * 109.46014 * 175.00023 * 9 8 7 27 27 H 1.08996 * 109.47107 * 299.99513 * 1 2 3 28 28 H 1.08993 * 109.47157 * 60.00217 * 1 2 3 29 29 H 1.09002 * 109.46864 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47006 * 239.99634 * 2 1 3 31 31 H 1.09004 * 109.46804 * 120.00112 * 2 1 3 32 32 H 1.09001 * 109.47279 * 59.99934 * 4 3 2 33 33 H 1.09007 * 109.47185 * 300.00662 * 4 3 2 34 34 H 0.96999 * 120.00446 * 359.97438 * 7 5 4 35 35 H 1.09001 * 109.47353 * 60.00073 * 8 7 5 36 36 H 1.08997 * 109.47478 * 299.99831 * 8 7 5 37 37 H 1.09001 * 109.45799 * 55.03185 * 9 8 7 38 38 H 1.08997 * 109.68637 * 58.70485 * 10 9 8 39 39 H 1.09002 * 109.47277 * 298.50741 * 10 9 8 40 40 H 1.09002 * 109.58720 * 294.71670 * 11 10 9 41 41 H 1.08996 * 109.58651 * 174.43567 * 11 10 9 42 42 H 1.09001 * 109.47488 * 299.99559 * 15 13 12 43 43 H 1.09001 * 109.47269 * 59.99982 * 15 13 12 44 44 H 0.96996 * 119.99581 * 180.02562 * 20 19 17 45 45 H 1.08994 * 109.58580 * 173.39910 * 25 12 11 46 46 H 1.09006 * 109.57831 * 293.67403 * 25 12 11 47 47 H 1.08994 * 109.50232 * 61.43679 * 26 9 8 48 48 H 1.09007 * 109.52628 * 301.35340 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8195 2.9161 0.0012 6 8 2.9610 3.7728 0.0006 7 7 5.1210 3.2662 0.0013 8 6 5.4987 4.6817 0.0012 9 6 7.0240 4.8025 0.0020 10 6 7.5800 4.2307 1.3117 11 6 9.1090 4.3244 1.2918 12 7 9.4969 5.7164 1.0264 13 6 10.3423 6.3632 1.8531 14 8 10.7902 5.7964 2.8272 15 6 10.7311 7.7908 1.5670 16 16 11.8680 8.3749 2.8485 17 6 12.1503 10.0189 2.2810 18 1 11.6663 10.3703 1.3817 19 6 12.9938 10.8628 2.9903 20 7 13.5832 10.4346 4.0866 21 14 13.2924 12.6059 2.3889 22 1 12.5189 12.8391 1.1429 23 1 12.8566 13.5704 3.4305 24 1 14.7398 12.7938 2.1148 25 6 8.9460 6.3898 -0.1576 26 6 7.4187 6.2757 -0.1238 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8340 0.9764 -0.8891 33 1 3.8333 0.9766 0.8908 34 1 5.8076 2.5810 0.0013 35 1 5.0959 5.1653 0.8912 36 1 5.0960 5.1652 -0.8887 37 1 7.4329 4.2439 -0.8399 38 1 7.2808 3.1875 1.4132 39 1 7.1913 4.8047 2.1528 40 1 9.5045 3.6789 0.5074 41 1 9.5068 4.0119 2.2572 42 1 11.2200 7.8463 0.5944 43 1 9.8384 8.4163 1.5612 44 1 14.1723 11.0245 4.5824 45 1 9.2343 7.4409 -0.1472 46 1 9.3303 5.9145 -1.0601 47 1 7.0314 6.8304 0.7307 48 1 7.0028 6.6871 -1.0435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001576442353.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:35 Heat of formation + Delta-G solvation = -128.911195 kcal Electronic energy + Delta-G solvation = -26981.442041 eV Core-core repulsion = 22969.353498 eV Total energy + Delta-G solvation = -4012.088543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.41366 -39.81911 -38.24338 -37.52510 -35.25678 -32.95692 -32.44024 -31.98548 -31.63632 -29.40901 -28.54971 -26.62159 -25.49657 -23.46792 -23.34914 -23.19664 -21.08007 -20.79928 -19.10550 -17.81355 -17.54011 -17.44281 -16.95977 -16.64734 -16.00011 -15.73351 -15.55365 -15.31644 -14.81874 -14.81004 -14.66262 -14.15931 -13.86207 -13.79653 -13.60739 -13.35668 -13.28262 -12.99557 -12.88325 -12.76942 -12.49586 -12.32205 -11.92722 -11.86804 -11.75930 -11.47576 -11.26110 -11.07992 -11.04220 -10.97360 -10.78732 -10.71635 -10.22502 -10.15653 -9.80439 -9.48843 -9.37020 -9.08557 -8.57299 -8.23577 -6.51583 -6.22960 -3.93600 2.22616 2.35424 2.90838 3.02414 3.20792 3.25383 3.30335 3.49290 3.57843 4.18823 4.23041 4.33487 4.35157 4.45559 4.50757 4.54852 4.67577 4.72894 4.80047 4.84218 4.91461 5.03652 5.09060 5.12457 5.17213 5.22211 5.27279 5.34612 5.41671 5.46307 5.54999 5.60910 5.63323 5.64061 5.65674 5.81363 5.85482 5.89027 5.96384 6.08932 6.10815 6.52461 6.61030 7.05284 7.52056 7.58816 7.82272 8.34157 8.53303 9.22608 10.84557 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.030076 B = 0.001571 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.747075 B =17822.594540 C =18232.613050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.365 6.365 4 C 0.044 3.956 5 C 0.512 3.488 6 O -0.518 6.518 7 N -0.728 5.728 8 C 0.126 3.874 9 C -0.098 4.098 10 C -0.130 4.130 11 C 0.113 3.887 12 N -0.621 5.621 13 C 0.535 3.465 14 O -0.517 6.517 15 C -0.151 4.151 16 S -0.062 6.062 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.918 3.082 22 H -0.271 1.271 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.109 3.891 26 C -0.128 4.128 27 H 0.065 0.935 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.401 0.599 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.268 0.732 45 H 0.092 0.908 46 H 0.067 0.933 47 H 0.074 0.926 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.012 -21.314 -12.871 31.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.284 6.284 4 C -0.036 4.036 5 C 0.297 3.703 6 O -0.392 6.392 7 N -0.383 5.383 8 C 0.003 3.997 9 C -0.117 4.117 10 C -0.168 4.168 11 C -0.010 4.010 12 N -0.357 5.357 13 C 0.323 3.677 14 O -0.392 6.392 15 C -0.301 4.301 16 S 0.165 5.835 17 C -0.683 4.683 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.014 4.014 26 C -0.167 4.167 27 H 0.084 0.916 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.098 0.902 33 H 0.098 0.902 34 H 0.235 0.765 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.112 0.888 42 H 0.107 0.893 43 H 0.108 0.892 44 H 0.078 0.922 45 H 0.110 0.890 46 H 0.086 0.914 47 H 0.093 0.907 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -19.991 -21.314 -11.265 31.318 hybrid contribution 0.208 1.169 -1.571 1.969 sum -19.783 -20.145 -12.836 31.015 Atomic orbital electron populations 1.21736 0.93274 1.02350 1.03548 1.22567 0.96111 0.83169 1.00254 1.88030 1.18327 1.26560 1.95436 1.22180 0.84243 0.94498 1.02651 1.20255 0.82655 0.90647 0.76789 1.90757 1.49324 1.51767 1.47354 1.45899 1.06896 1.09095 1.76400 1.21451 0.94458 0.81023 1.02817 1.21454 0.93634 0.97736 0.98856 1.22064 0.95897 1.01204 0.97629 1.21478 0.93848 0.82693 1.02990 1.48104 1.47571 1.13293 1.26763 1.20342 0.77435 0.88058 0.81829 1.90689 1.52902 1.68017 1.27547 1.23556 1.05164 0.94700 1.06723 1.85412 1.54574 1.13464 1.30087 1.22897 1.33418 0.97979 1.13986 0.90888 1.24989 0.94851 0.99091 0.94615 1.70027 1.28522 1.36367 1.15352 0.86122 0.78167 0.82498 0.78743 1.19601 1.20555 1.20568 1.21692 0.92765 0.99094 0.87861 1.21902 0.96123 0.95270 1.03398 0.91610 0.91660 0.90871 0.93131 0.93076 0.90246 0.90175 0.76480 0.91075 0.91125 0.90176 0.91022 0.90945 0.91935 0.88808 0.89274 0.89245 0.92231 0.88956 0.91431 0.90721 0.90234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.28 37.16 0.38 -0.40 16 2 C 0.06 0.31 6.66 37.16 0.25 0.56 16 3 O -0.37 -3.37 9.87 -55.14 -0.54 -3.92 16 4 C 0.04 0.28 6.42 36.00 0.23 0.51 16 5 C 0.51 4.73 7.91 -10.99 -0.09 4.64 16 6 O -0.52 -7.46 16.50 -14.35 -0.24 -7.69 16 7 N -0.73 -4.65 5.27 -60.29 -0.32 -4.97 16 8 C 0.13 0.93 5.07 -4.04 -0.02 0.91 16 9 C -0.10 -0.64 2.19 -90.42 -0.20 -0.84 16 10 C -0.13 -1.01 5.27 -26.45 -0.14 -1.15 16 11 C 0.11 1.20 6.42 -3.71 -0.02 1.17 16 12 N -0.62 -8.17 2.97 -172.77 -0.51 -8.69 16 13 C 0.54 9.90 7.72 -10.99 -0.08 9.82 16 14 O -0.52 -11.61 15.27 5.56 0.08 -11.53 16 15 C -0.15 -3.01 4.50 36.00 0.16 -2.84 16 16 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 17 C -0.53 -15.10 9.50 30.94 0.29 -14.81 16 18 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 19 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 20 N -0.87 -26.05 13.22 55.49 0.73 -25.31 16 21 Si 0.92 21.28 29.55 -169.99 -5.02 16.26 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 23 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 25 C 0.11 1.06 6.34 -3.71 -0.02 1.04 16 26 C -0.13 -0.99 5.36 -26.62 -0.14 -1.13 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.21 8.14 -51.93 -0.42 -0.22 16 31 H 0.05 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.40 1.36 7.65 -40.82 -0.31 1.04 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.07 0.40 7.16 -51.93 -0.37 0.03 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 1.21 7.00 -51.93 -0.36 0.84 16 42 H 0.09 1.64 7.94 -51.92 -0.41 1.23 16 43 H 0.09 1.65 7.69 -51.91 -0.40 1.25 16 44 H 0.27 7.45 8.31 -40.82 -0.34 7.12 16 45 H 0.09 0.96 5.93 -51.93 -0.31 0.65 16 46 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 48 H 0.08 0.49 8.14 -51.92 -0.42 0.07 16 LS Contribution 405.32 15.07 6.11 6.11 Total: -1.00 -38.35 405.32 -9.47 -47.82 By element: Atomic # 1 Polarization: 4.39 SS G_CDS: -8.05 Total: -3.67 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: 0.50 Total: -0.53 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: -0.10 Total: -38.97 kcal Atomic # 8 Polarization: -22.44 SS G_CDS: -0.70 Total: -23.14 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -38.35 -9.47 -47.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576442353.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.087 kcal (2) G-P(sol) polarization free energy of solvation -38.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds