Wall clock time and date at job start Sat Apr 11 2020 07:12:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42894 * 109.47239 * 2 1 4 4 C 1.42898 * 114.00273 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47394 * 180.02562 * 4 3 2 6 6 O 1.21282 * 119.99855 * 359.97438 * 5 4 3 7 7 N 1.34778 * 120.00026 * 180.02562 * 5 4 3 8 8 C 1.46500 * 119.99850 * 179.97438 * 7 5 4 9 9 C 1.53004 * 109.47150 * 179.97438 * 8 7 5 10 10 C 1.53346 * 109.41904 * 295.13157 * 9 8 7 11 11 C 1.53195 * 109.14901 * 178.67276 * 10 9 8 12 12 N 1.46919 * 108.89273 * 54.57640 * 11 10 9 13 13 C 1.34778 * 120.63255 * 126.34238 * 12 11 10 14 14 O 1.21279 * 120.00169 * 359.97438 * 13 12 11 15 15 C 1.50698 * 120.00023 * 179.97438 * 13 12 11 16 16 S 1.81004 * 109.47124 * 179.97438 * 15 13 12 17 17 C 1.76202 * 100.00170 * 179.97438 * 16 15 13 18 18 H 1.08000 * 119.99808 * 0.02562 * 17 16 15 19 19 C 1.38802 * 119.99850 * 179.97438 * 17 16 15 20 20 N 1.31629 * 120.00032 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99655 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47451 * 359.97438 * 21 19 17 23 23 H 1.48500 * 109.47165 * 119.99882 * 21 19 17 24 24 H 1.48501 * 109.46985 * 240.00093 * 21 19 17 25 25 C 1.46933 * 118.74003 * 306.32349 * 12 11 10 26 26 C 1.53034 * 109.46014 * 175.00023 * 9 8 7 27 27 H 1.08996 * 109.47107 * 299.99513 * 1 2 3 28 28 H 1.08993 * 109.47157 * 60.00217 * 1 2 3 29 29 H 1.09002 * 109.46864 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47006 * 239.99634 * 2 1 3 31 31 H 1.09004 * 109.46804 * 120.00112 * 2 1 3 32 32 H 1.09001 * 109.47279 * 59.99934 * 4 3 2 33 33 H 1.09007 * 109.47185 * 300.00662 * 4 3 2 34 34 H 0.96999 * 120.00446 * 359.97438 * 7 5 4 35 35 H 1.09001 * 109.47353 * 60.00073 * 8 7 5 36 36 H 1.08997 * 109.47478 * 299.99831 * 8 7 5 37 37 H 1.09001 * 109.45799 * 55.03185 * 9 8 7 38 38 H 1.08997 * 109.68637 * 58.70485 * 10 9 8 39 39 H 1.09002 * 109.47277 * 298.50741 * 10 9 8 40 40 H 1.09002 * 109.58720 * 294.71670 * 11 10 9 41 41 H 1.08996 * 109.58651 * 174.43567 * 11 10 9 42 42 H 1.09001 * 109.47488 * 299.99559 * 15 13 12 43 43 H 1.09001 * 109.47269 * 59.99982 * 15 13 12 44 44 H 0.96996 * 119.99581 * 180.02562 * 20 19 17 45 45 H 1.08994 * 109.58580 * 173.39910 * 25 12 11 46 46 H 1.09006 * 109.57831 * 293.67403 * 25 12 11 47 47 H 1.08994 * 109.50232 * 61.43679 * 26 9 8 48 48 H 1.09007 * 109.52628 * 301.35340 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8195 2.9161 0.0012 6 8 2.9610 3.7728 0.0006 7 7 5.1210 3.2662 0.0013 8 6 5.4987 4.6817 0.0012 9 6 7.0240 4.8025 0.0020 10 6 7.5800 4.2307 1.3117 11 6 9.1090 4.3244 1.2918 12 7 9.4969 5.7164 1.0264 13 6 10.3423 6.3632 1.8531 14 8 10.7902 5.7964 2.8272 15 6 10.7311 7.7908 1.5670 16 16 11.8680 8.3749 2.8485 17 6 12.1503 10.0189 2.2810 18 1 11.6663 10.3703 1.3817 19 6 12.9938 10.8628 2.9903 20 7 13.5832 10.4346 4.0866 21 14 13.2924 12.6059 2.3889 22 1 12.5189 12.8391 1.1429 23 1 12.8566 13.5704 3.4305 24 1 14.7398 12.7938 2.1148 25 6 8.9460 6.3898 -0.1576 26 6 7.4187 6.2757 -0.1238 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8340 0.9764 -0.8891 33 1 3.8333 0.9766 0.8908 34 1 5.8076 2.5810 0.0013 35 1 5.0959 5.1653 0.8912 36 1 5.0960 5.1652 -0.8887 37 1 7.4329 4.2439 -0.8399 38 1 7.2808 3.1875 1.4132 39 1 7.1913 4.8047 2.1528 40 1 9.5045 3.6789 0.5074 41 1 9.5068 4.0119 2.2572 42 1 11.2200 7.8463 0.5944 43 1 9.8384 8.4163 1.5612 44 1 14.1723 11.0245 4.5824 45 1 9.2343 7.4409 -0.1472 46 1 9.3303 5.9145 -1.0601 47 1 7.0314 6.8304 0.7307 48 1 7.0028 6.6871 -1.0435 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001576442353.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:34 Heat of formation + Delta-G solvation = -156.378813 kcal Electronic energy + Delta-G solvation = -26982.633126 eV Core-core repulsion = 22969.353498 eV Total energy + Delta-G solvation = -4013.279628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.88 seconds Orbital eigenvalues (eV) -41.29804 -40.74896 -38.96089 -38.41002 -36.15706 -34.58943 -33.85288 -32.55611 -32.36858 -30.60640 -29.37941 -27.71168 -27.28012 -24.25909 -24.12274 -23.66323 -21.79790 -21.60390 -20.32349 -19.49418 -18.37307 -18.02510 -17.85586 -17.42676 -16.95150 -16.87013 -16.72012 -16.48632 -16.19321 -15.83824 -15.41769 -15.30275 -14.89553 -14.74792 -14.53435 -14.34877 -14.14216 -14.01773 -13.82916 -13.55953 -13.34771 -13.23677 -13.16272 -13.03395 -12.91670 -12.59468 -12.30801 -12.21440 -12.17401 -11.98500 -11.70365 -11.67782 -11.44587 -11.16196 -10.91888 -10.81605 -10.66030 -10.25896 -10.12048 -9.66248 -8.67634 -8.35119 -6.13342 1.26227 1.41179 1.46340 1.56614 1.57438 1.58593 1.84049 2.13850 2.27175 2.99338 3.04605 3.25596 3.60894 3.65077 3.75655 3.83263 3.85677 4.12962 4.16768 4.19859 4.25453 4.31851 4.33591 4.35986 4.36166 4.45608 4.51359 4.52317 4.59567 4.68900 4.80601 4.83496 4.87886 4.91538 5.00198 5.02990 5.07744 5.15538 5.26718 5.34360 5.41748 5.47865 5.62700 6.11473 6.19673 6.30431 6.55740 7.06420 7.16285 7.23463 8.74455 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.030076 B = 0.001571 C = 0.001535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 930.747075 B =17822.594540 C =18232.613050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.406 6.406 4 C 0.044 3.956 5 C 0.506 3.494 6 O -0.580 6.580 7 N -0.711 5.711 8 C 0.130 3.870 9 C -0.084 4.084 10 C -0.122 4.122 11 C 0.108 3.892 12 N -0.607 5.607 13 C 0.531 3.469 14 O -0.569 6.569 15 C -0.124 4.124 16 S -0.155 6.155 17 C -0.544 4.544 18 H 0.083 0.917 19 C 0.014 3.986 20 N -0.912 5.912 21 Si 0.998 3.002 22 H -0.256 1.256 23 H -0.275 1.275 24 H -0.273 1.273 25 C 0.101 3.899 26 C -0.126 4.126 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.112 0.888 33 H 0.108 0.892 34 H 0.419 0.581 35 H 0.048 0.952 36 H 0.068 0.932 37 H 0.109 0.891 38 H 0.101 0.899 39 H 0.047 0.953 40 H 0.094 0.906 41 H 0.065 0.935 42 H 0.108 0.892 43 H 0.104 0.896 44 H 0.271 0.729 45 H 0.085 0.915 46 H 0.098 0.902 47 H 0.055 0.945 48 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.661 -22.488 -15.844 34.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 O -0.326 6.326 4 C -0.035 4.035 5 C 0.293 3.707 6 O -0.459 6.459 7 N -0.365 5.365 8 C 0.006 3.994 9 C -0.103 4.103 10 C -0.160 4.160 11 C -0.014 4.014 12 N -0.341 5.341 13 C 0.319 3.681 14 O -0.448 6.448 15 C -0.275 4.275 16 S 0.073 5.927 17 C -0.692 4.692 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.548 5.548 21 Si 0.820 3.180 22 H -0.179 1.179 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.021 4.021 26 C -0.164 4.164 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.257 0.743 35 H 0.067 0.933 36 H 0.086 0.914 37 H 0.128 0.872 38 H 0.120 0.880 39 H 0.066 0.934 40 H 0.112 0.888 41 H 0.084 0.916 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.080 0.920 45 H 0.104 0.896 46 H 0.117 0.883 47 H 0.074 0.926 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -20.643 -22.541 -14.288 33.740 hybrid contribution 0.327 1.411 -0.711 1.614 sum -20.316 -21.130 -14.998 32.927 Atomic orbital electron populations 1.21789 0.93634 1.03408 1.02311 1.22757 0.95977 0.82002 1.01814 1.87984 1.20077 1.28721 1.95808 1.22362 0.83317 0.92409 1.05404 1.20936 0.82694 0.91643 0.75473 1.90730 1.51106 1.53625 1.50470 1.45755 1.06689 1.09202 1.74898 1.21315 0.94847 0.81524 1.01689 1.21363 0.92744 0.97183 0.98970 1.22016 0.93598 1.02805 0.97567 1.21722 0.95704 0.81252 1.02706 1.48143 1.45425 1.14217 1.26362 1.20114 0.78382 0.87533 0.82091 1.90670 1.55404 1.68795 1.29928 1.23376 1.03717 0.96042 1.04379 1.85591 1.57654 1.14688 1.34800 1.23224 1.33626 0.98063 1.14305 0.89908 1.26117 0.94310 1.04053 0.94575 1.70191 1.29422 1.38287 1.16918 0.84913 0.78329 0.76098 0.78659 1.17934 1.20025 1.19885 1.22023 0.94011 0.98815 0.87205 1.21890 0.94509 0.96128 1.03889 0.92973 0.92770 0.88655 0.91307 0.91598 0.87009 0.87464 0.74276 0.93332 0.91377 0.87243 0.88043 0.93424 0.88771 0.91605 0.87368 0.87739 0.92005 0.89642 0.88342 0.92606 0.87823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 10.28 71.98 0.74 -0.74 16 2 C 0.05 0.47 6.66 71.98 0.48 0.95 16 3 O -0.41 -7.05 9.87 -129.94 -1.28 -8.33 16 4 C 0.04 0.44 6.42 71.24 0.46 0.90 16 5 C 0.51 8.60 7.91 87.66 0.69 9.29 16 6 O -0.58 -16.90 16.50 16.00 0.26 -16.63 16 7 N -0.71 -7.13 5.27 -463.06 -2.44 -9.58 16 8 C 0.13 1.66 5.07 86.38 0.44 2.10 16 9 C -0.08 -0.81 2.19 -10.66 -0.02 -0.83 16 10 C -0.12 -1.59 5.27 30.78 0.16 -1.43 16 11 C 0.11 2.07 6.42 86.36 0.55 2.62 16 12 N -0.61 -15.03 2.97 -818.91 -2.43 -17.47 16 13 C 0.53 19.76 7.72 87.66 0.68 20.43 16 14 O -0.57 -26.55 15.27 -3.03 -0.05 -26.60 16 15 C -0.12 -4.94 4.50 71.24 0.32 -4.62 16 16 S -0.15 -8.64 20.57 -56.49 -1.16 -9.80 16 17 C -0.54 -31.08 9.50 67.96 0.65 -30.43 16 18 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 19 C 0.01 0.80 5.49 84.86 0.47 1.27 16 20 N -0.91 -56.11 13.22 21.65 0.29 -55.83 16 21 Si 1.00 43.54 29.55 68.60 2.03 45.56 16 22 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 C 0.10 1.66 6.34 86.36 0.55 2.21 16 26 C -0.13 -1.59 5.36 30.67 0.16 -1.43 16 27 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 31 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 34 H 0.42 1.05 7.65 -92.71 -0.71 0.34 16 35 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 38 H 0.10 0.75 7.16 -2.39 -0.02 0.73 16 39 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 40 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.68 7.00 -2.39 -0.02 1.67 16 42 H 0.11 3.86 7.94 -2.39 -0.02 3.84 16 43 H 0.10 3.81 7.69 -2.40 -0.02 3.79 16 44 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 45 H 0.09 1.55 5.93 -2.39 -0.01 1.54 16 46 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 47 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.10 0.89 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -90.22 405.32 1.77 -88.45 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: 0.24 Total: 9.92 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: 6.32 Total: 0.29 kcal Atomic # 7 Polarization: -78.28 SS G_CDS: -4.59 Total: -82.87 kcal Atomic # 8 Polarization: -50.50 SS G_CDS: -1.07 Total: -51.57 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.56 kcal Atomic # 16 Polarization: -8.64 SS G_CDS: -1.16 Total: -9.80 kcal Total: -90.22 1.77 -88.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001576442353.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.927 kcal (2) G-P(sol) polarization free energy of solvation -90.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.88 seconds