Wall clock time and date at job start Sat Apr 11 2020 07:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42903 * 109.47006 * 2 1 4 4 C 1.35899 * 116.99930 * 180.02562 * 3 2 1 5 5 C 1.38747 * 120.05586 * 359.97438 * 4 3 2 6 6 C 1.38125 * 119.94590 * 180.02562 * 5 4 3 7 7 C 1.38289 * 120.05159 * 359.97438 * 6 5 4 8 8 C 1.38243 * 120.11362 * 0.02562 * 7 6 5 9 9 C 1.38163 * 120.05438 * 359.97438 * 8 7 6 10 10 C 1.50708 * 120.02715 * 179.97438 * 9 8 7 11 11 H 1.08999 * 109.47067 * 145.02382 * 10 9 8 12 12 N 1.46904 * 109.46856 * 25.02748 * 10 9 8 13 13 C 1.52997 * 109.47157 * 265.02349 * 10 9 8 14 14 C 1.50703 * 109.46874 * 184.99717 * 13 10 9 15 15 O 1.21305 * 119.99957 * 0.02562 * 14 13 10 16 16 N 1.34779 * 119.99764 * 179.97438 * 14 13 10 17 17 C 1.40594 * 119.99921 * 180.02562 * 16 14 13 18 18 C 1.40648 * 126.08400 * 359.69773 * 17 16 14 19 19 N 1.30902 * 108.39128 * 179.81491 * 18 17 16 20 20 N 1.40074 * 108.40356 * 0.43574 * 19 18 17 21 21 C 1.37321 * 126.06658 * 179.69865 * 20 19 18 22 22 H 1.08000 * 119.99631 * 180.02562 * 21 20 19 23 23 C 1.38979 * 120.00503 * 0.02562 * 21 20 19 24 24 N 1.31303 * 119.99938 * 0.02562 * 23 21 20 25 25 Si 1.86798 * 120.00349 * 180.02562 * 23 21 20 26 26 H 1.48496 * 109.47306 * 60.00067 * 25 23 21 27 27 H 1.48505 * 109.47174 * 180.02562 * 25 23 21 28 28 H 1.48498 * 109.47184 * 300.00235 * 25 23 21 29 29 C 1.35680 * 126.08110 * 179.97438 * 17 16 14 30 30 H 1.08993 * 109.47487 * 299.99875 * 1 2 3 31 31 H 1.09003 * 109.46669 * 60.00618 * 1 2 3 32 32 H 1.09004 * 109.46898 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47474 * 239.99645 * 2 1 3 34 34 H 1.08995 * 109.46823 * 119.99665 * 2 1 3 35 35 H 1.08000 * 120.03046 * 0.02562 * 5 4 3 36 36 H 1.07993 * 119.97844 * 179.72247 * 6 5 4 37 37 H 1.08004 * 119.94567 * 179.97438 * 7 6 5 38 38 H 1.08001 * 119.97502 * 180.02562 * 8 7 6 39 39 H 1.00901 * 110.99725 * 299.99398 * 12 10 9 40 40 H 1.00892 * 110.99922 * 63.95474 * 12 10 9 41 41 H 1.08996 * 109.47532 * 305.00235 * 13 10 9 42 42 H 1.09000 * 109.46938 * 65.00618 * 13 10 9 43 43 H 0.96998 * 120.00229 * 0.02562 * 16 14 13 44 44 H 1.08010 * 125.80068 * 359.95807 * 18 17 16 45 45 H 0.96997 * 119.99920 * 180.02562 * 24 23 21 46 46 H 1.08000 * 126.24944 * 359.97438 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4259 -0.0005 6 6 5.5689 0.6095 -0.0005 7 6 6.0961 1.8879 -0.0011 8 6 5.2551 2.9851 -0.0011 9 6 3.8850 2.8066 -0.0011 10 6 2.9687 4.0031 -0.0005 11 1 2.0792 3.7798 -0.5897 12 7 3.6673 5.1552 -0.5861 13 6 2.5593 4.3314 1.4366 14 6 1.5481 5.4487 1.4282 15 8 1.1897 5.9344 0.3760 16 7 1.0412 5.9076 2.5896 17 6 0.0974 6.9497 2.5817 18 6 -0.4012 7.6071 1.4427 19 7 -1.2614 8.5135 1.8325 20 7 -1.3385 8.4778 3.2306 21 6 -2.1272 9.2805 4.0176 22 1 -2.1095 9.1687 5.0916 23 6 -2.9482 10.2369 3.4320 24 7 -2.9702 10.3725 2.1262 25 14 -4.0205 11.3293 4.5026 26 1 -3.1620 12.1116 5.4279 27 1 -4.7961 12.2581 3.6417 28 1 -4.9563 10.4863 5.2893 29 6 -0.4906 7.5035 3.6719 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.7886 -0.5727 -0.0005 36 1 6.2281 -0.2459 0.0040 37 1 7.1668 2.0295 -0.0007 38 1 5.6692 3.9825 -0.0020 39 1 4.4962 5.3823 -0.0574 40 1 3.8912 4.9877 -1.5555 41 1 2.1207 3.4478 1.9003 42 1 3.4378 4.6407 2.0029 43 1 1.3275 5.5190 3.4310 44 1 -0.1233 7.3980 0.4201 45 1 -3.5429 11.0402 1.7175 46 1 -0.3192 7.2242 4.7010 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001578204224.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:46 Heat of formation + Delta-G solvation = 13.701230 kcal Electronic energy + Delta-G solvation = -29189.000201 eV Core-core repulsion = 25079.944597 eV Total energy + Delta-G solvation = -4109.055604 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.67284 -41.33671 -40.08484 -38.65402 -36.54721 -35.70268 -34.84553 -32.82731 -32.24161 -31.24470 -30.85520 -30.29516 -29.10934 -26.75189 -25.31799 -24.44411 -22.85065 -22.63504 -22.06370 -21.15417 -20.94170 -19.33068 -19.10218 -17.96495 -17.38940 -17.31475 -17.03310 -16.93337 -16.51380 -16.44261 -16.02501 -15.65436 -15.43081 -15.18728 -14.84833 -14.76164 -14.47822 -14.39694 -14.22490 -13.86202 -13.44150 -13.39678 -13.24657 -13.09458 -12.88291 -12.82766 -12.70651 -12.62752 -12.54653 -12.12549 -12.07319 -11.76070 -11.69292 -11.64052 -10.92652 -10.77462 -10.47401 -10.04683 -9.87474 -9.49138 -9.08042 -8.43573 -8.43325 -6.19863 0.33378 0.49582 1.29455 1.40322 1.57082 1.65540 1.96789 2.11035 2.29354 2.41274 2.62915 2.80137 3.00082 3.12123 3.62584 3.71076 3.90192 4.02457 4.04929 4.06695 4.20626 4.22295 4.34591 4.41975 4.45420 4.49731 4.51037 4.63201 4.68632 4.76860 4.87155 4.91726 4.93488 5.04036 5.09961 5.18449 5.21302 5.34435 5.39220 5.50273 5.59808 5.61616 5.87716 6.00313 6.31082 6.39895 6.50807 6.67969 6.79086 6.93266 7.50909 7.61769 7.76424 8.56056 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.020004 B = 0.002111 C = 0.002002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.368057 B =13260.151767 C =13982.406184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.050 3.950 3 O -0.334 6.334 4 C 0.121 3.879 5 C -0.213 4.213 6 C -0.083 4.083 7 C -0.157 4.157 8 C -0.086 4.086 9 C -0.163 4.163 10 C 0.170 3.830 11 H 0.065 0.935 12 N -0.837 5.837 13 C -0.106 4.106 14 C 0.500 3.500 15 O -0.553 6.553 16 N -0.628 5.628 17 C -0.036 4.036 18 C -0.062 4.062 19 N -0.311 5.311 20 N -0.170 5.170 21 C -0.355 4.355 22 H 0.140 0.860 23 C -0.009 4.009 24 N -0.827 5.827 25 Si 1.020 2.980 26 H -0.253 1.253 27 H -0.278 1.278 28 H -0.253 1.253 29 C -0.087 4.087 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.102 0.898 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.144 0.856 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.140 0.860 39 H 0.344 0.656 40 H 0.346 0.654 41 H 0.106 0.894 42 H 0.113 0.887 43 H 0.416 0.584 44 H 0.165 0.835 45 H 0.275 0.725 46 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.027 -23.367 0.576 28.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.025 4.025 3 O -0.248 6.248 4 C 0.075 3.925 5 C -0.232 4.232 6 C -0.101 4.101 7 C -0.175 4.175 8 C -0.104 4.104 9 C -0.166 4.166 10 C 0.058 3.942 11 H 0.083 0.917 12 N -0.367 5.367 13 C -0.147 4.147 14 C 0.288 3.712 15 O -0.430 6.430 16 N -0.274 5.274 17 C -0.142 4.142 18 C -0.237 4.237 19 N -0.143 5.143 20 N 0.060 4.940 21 C -0.486 4.486 22 H 0.157 0.843 23 C -0.220 4.220 24 N -0.455 5.455 25 Si 0.839 3.161 26 H -0.177 1.177 27 H -0.203 1.203 28 H -0.177 1.177 29 C -0.237 4.237 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.161 0.839 36 H 0.167 0.833 37 H 0.163 0.837 38 H 0.157 0.843 39 H 0.159 0.841 40 H 0.160 0.840 41 H 0.124 0.876 42 H 0.131 0.869 43 H 0.252 0.748 44 H 0.182 0.818 45 H 0.085 0.915 46 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 15.052 -21.440 -0.582 26.202 hybrid contribution 0.851 -1.093 0.441 1.454 sum 15.903 -22.533 -0.140 27.580 Atomic orbital electron populations 1.21823 0.92569 1.03999 1.02713 1.22995 0.96128 0.80932 1.02399 1.86129 1.19223 1.31054 1.88415 1.19055 0.82692 0.94069 0.96655 1.21504 0.94809 0.98249 1.08596 1.21309 0.94275 0.98285 0.96271 1.21340 1.00901 0.92155 1.03141 1.21027 0.91158 1.00451 0.97765 1.20230 0.95345 0.93075 1.07933 1.19601 0.94955 0.85633 0.94041 0.91703 1.58731 1.31454 1.39403 1.07141 1.21579 0.98179 0.96370 0.98534 1.21126 0.82662 0.84655 0.82747 1.90599 1.60617 1.59469 1.32317 1.42595 1.40788 1.34189 1.09834 1.17379 1.03854 1.00302 0.92713 1.24139 1.01048 0.98969 0.99579 1.78124 1.22719 1.23274 0.90204 1.44814 1.24482 1.20734 1.03966 1.20554 1.21245 1.15174 0.91630 0.84284 1.26908 0.98703 0.98919 0.97488 1.70414 1.33350 1.30043 1.11725 0.84644 0.77331 0.76969 0.77168 1.17680 1.20337 1.17704 1.21988 1.03118 0.99598 0.98965 0.92453 0.92753 0.87932 0.91003 0.90550 0.83862 0.83337 0.83660 0.84275 0.84095 0.83993 0.87577 0.86889 0.74799 0.81796 0.91498 0.79700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.24 10.28 71.98 0.74 -1.50 16 2 C 0.05 0.73 5.46 71.98 0.39 1.13 16 3 O -0.33 -7.40 9.27 -92.41 -0.86 -8.25 16 4 C 0.12 2.46 6.66 22.50 0.15 2.61 16 5 C -0.21 -3.24 9.04 22.36 0.20 -3.04 16 6 C -0.08 -1.04 10.04 22.25 0.22 -0.82 16 7 C -0.16 -2.03 10.04 22.28 0.22 -1.81 16 8 C -0.09 -1.35 9.27 22.25 0.21 -1.15 16 9 C -0.16 -3.32 5.06 -19.77 -0.10 -3.42 16 10 C 0.17 4.33 2.26 44.17 0.10 4.43 16 11 H 0.06 2.13 7.50 -2.39 -0.02 2.11 16 12 N -0.84 -20.77 7.97 -171.79 -1.37 -22.14 16 13 C -0.11 -2.64 5.33 29.85 0.16 -2.48 16 14 C 0.50 18.20 7.66 87.66 0.67 18.87 16 15 O -0.55 -25.51 12.51 -3.11 -0.04 -25.55 16 16 N -0.63 -22.90 5.47 -303.92 -1.66 -24.56 16 17 C -0.04 -1.76 6.90 37.73 0.26 -1.50 16 18 C -0.06 -3.59 10.85 85.42 0.93 -2.66 16 19 N -0.31 -19.63 10.40 -56.46 -0.59 -20.21 16 20 N -0.17 -9.86 3.74 -190.02 -0.71 -10.57 16 21 C -0.36 -19.47 10.25 84.01 0.86 -18.61 16 22 H 0.14 6.59 7.83 -2.91 -0.02 6.57 16 23 C -0.01 -0.49 5.50 84.95 0.47 -0.02 16 24 N -0.83 -49.48 11.81 21.66 0.26 -49.22 16 25 Si 1.02 39.81 29.55 68.60 2.03 41.84 16 26 H -0.25 -9.19 7.11 99.48 0.71 -8.48 16 27 H -0.28 -10.77 7.11 99.48 0.71 -10.06 16 28 H -0.25 -9.19 7.11 99.48 0.71 -8.49 16 29 C -0.09 -4.20 11.49 83.38 0.96 -3.24 16 30 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.85 7.66 -2.39 -0.02 0.83 16 34 H 0.08 0.86 7.66 -2.39 -0.02 0.84 16 35 H 0.14 1.57 6.30 -2.91 -0.02 1.55 16 36 H 0.15 1.04 8.06 -2.91 -0.02 1.01 16 37 H 0.15 1.18 8.06 -2.91 -0.02 1.15 16 38 H 0.14 1.75 6.29 -2.91 -0.02 1.73 16 39 H 0.34 6.78 7.21 -89.69 -0.65 6.13 16 40 H 0.35 7.77 9.06 -89.70 -0.81 6.95 16 41 H 0.11 2.36 8.14 -2.39 -0.02 2.34 16 42 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 43 H 0.42 11.19 8.83 -92.71 -0.82 10.37 16 44 H 0.17 9.67 5.92 -2.91 -0.02 9.65 16 45 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 46 H 0.19 7.10 8.06 -2.91 -0.02 7.08 16 Total: -1.00 -83.51 385.59 2.28 -81.24 By element: Atomic # 1 Polarization: 51.87 SS G_CDS: -1.23 Total: 50.64 kcal Atomic # 6 Polarization: -19.65 SS G_CDS: 6.44 Total: -13.21 kcal Atomic # 7 Polarization: -122.63 SS G_CDS: -4.07 Total: -126.70 kcal Atomic # 8 Polarization: -32.91 SS G_CDS: -0.90 Total: -33.81 kcal Atomic # 14 Polarization: 39.81 SS G_CDS: 2.03 Total: 41.84 kcal Total: -83.51 2.28 -81.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001578204224.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.937 kcal (2) G-P(sol) polarization free energy of solvation -83.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.236 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds