Wall clock time and date at job start Sat Apr 11 2020 07:13:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.47118 * 2 1 4 4 C 1.42896 * 113.99860 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.46947 * 30.00096 * 4 3 2 6 6 C 1.52993 * 109.47019 * 269.99907 * 4 3 2 7 7 C 1.50695 * 109.46941 * 149.99606 * 4 3 2 8 8 O 1.21282 * 120.00143 * 12.49456 * 7 4 3 9 9 N 1.34777 * 119.99939 * 192.48543 * 7 4 3 10 10 C 1.47023 * 125.65092 * 355.12040 * 9 7 4 11 11 C 1.54321 * 107.27113 * 178.90185 * 10 9 7 12 12 C 1.55156 * 102.94585 * 337.80323 * 11 10 9 13 13 H 1.09002 * 111.03754 * 277.41645 * 12 11 10 14 14 C 1.52998 * 111.00401 * 153.57596 * 12 11 10 15 15 N 1.46507 * 109.46911 * 72.80917 * 14 12 11 16 16 C 1.34772 * 119.99760 * 179.97438 * 15 14 12 17 17 O 1.21283 * 119.99990 * 0.02562 * 16 15 14 18 18 C 1.50702 * 119.99755 * 179.72142 * 16 15 14 19 19 S 1.81008 * 109.46915 * 180.27781 * 18 16 15 20 20 C 1.76198 * 99.99782 * 180.02562 * 19 18 16 21 21 H 1.08001 * 119.99851 * 359.97438 * 20 19 18 22 22 C 1.38797 * 120.00087 * 179.97438 * 20 19 18 23 23 N 1.31634 * 119.99775 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 120.00122 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47359 * 0.02562 * 24 22 20 26 26 H 1.48501 * 109.46862 * 120.00251 * 24 22 20 27 27 H 1.48498 * 109.46876 * 239.99915 * 24 22 20 28 28 C 1.47429 * 125.64743 * 175.07085 * 9 7 4 29 29 H 1.09001 * 109.47454 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47021 * 299.99924 * 1 2 3 31 31 H 1.08999 * 109.47441 * 59.99891 * 1 2 3 32 32 H 1.09000 * 109.47021 * 240.00075 * 2 1 3 33 33 H 1.09001 * 109.46921 * 120.00080 * 2 1 3 34 34 H 1.08996 * 109.47534 * 304.74822 * 6 4 3 35 35 H 1.09002 * 109.47143 * 64.75137 * 6 4 3 36 36 H 1.08998 * 109.47176 * 184.75056 * 6 4 3 37 37 H 1.09000 * 109.87700 * 298.31628 * 10 9 7 38 38 H 1.08993 * 109.88137 * 59.32429 * 10 9 7 39 39 H 1.09001 * 110.71804 * 219.44120 * 11 10 9 40 40 H 1.08996 * 110.72135 * 96.16906 * 11 10 9 41 41 H 1.08995 * 109.47523 * 312.80600 * 14 12 11 42 42 H 1.08998 * 109.46626 * 192.80459 * 14 12 11 43 43 H 0.96993 * 119.99958 * 359.97438 * 15 14 12 44 44 H 1.08999 * 109.47145 * 300.27360 * 18 16 15 45 45 H 1.09000 * 109.46971 * 60.27894 * 18 16 15 46 46 H 0.97006 * 119.99930 * 179.97438 * 23 22 20 47 47 H 1.08997 * 110.36711 * 85.33083 * 28 9 7 48 48 H 1.09004 * 110.36675 * 323.00828 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8630 0.6017 -0.5147 6 6 3.9398 1.5002 1.4417 7 6 3.8341 2.7264 -0.7110 8 8 3.0003 3.5680 -0.9706 9 7 5.1215 2.9238 -1.0578 10 6 6.2458 2.0397 -0.7176 11 6 7.5157 2.6507 -1.3465 12 6 6.9469 3.5419 -2.4821 13 1 6.7391 2.9526 -3.3752 14 6 7.8973 4.6979 -2.8002 15 7 9.0712 4.1837 -3.5102 16 6 10.0492 5.0274 -3.8947 17 8 9.9579 6.2123 -3.6525 18 6 11.2596 4.4975 -4.6195 19 16 12.3868 5.8643 -4.9907 20 6 13.6732 4.9851 -5.8134 21 1 13.5965 3.9162 -5.9474 22 6 14.7849 5.6663 -6.2893 23 7 14.8785 6.9690 -6.1255 24 14 16.1490 4.7341 -7.1610 25 1 15.8056 3.2904 -7.2154 26 1 16.3027 5.2583 -8.5418 27 1 17.4229 4.9128 -6.4191 28 6 5.6353 4.0615 -1.8421 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.4437 2.3078 1.9798 35 1 3.7221 0.5505 1.9303 36 1 5.0164 1.6708 1.4424 37 1 6.3586 1.9835 0.3651 38 1 6.0704 1.0437 -1.1240 39 1 8.1581 1.8700 -1.7541 40 1 8.0556 3.2539 -0.6167 41 1 8.2137 5.1741 -1.8723 42 1 7.3847 5.4278 -3.4268 43 1 9.1444 3.2360 -3.7036 44 1 11.7689 3.7673 -3.9906 45 1 10.9471 4.0217 -5.5490 46 1 15.6557 7.4450 -6.4578 47 1 5.8417 4.9097 -1.1895 48 1 4.9208 4.3423 -2.6160 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580025654.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:02 Heat of formation + Delta-G solvation = -149.932510 kcal Electronic energy + Delta-G solvation = -26929.151463 eV Core-core repulsion = 22916.151368 eV Total energy + Delta-G solvation = -4013.000095 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.47264 -40.59322 -39.32536 -38.32047 -35.95952 -34.56669 -33.83851 -32.69181 -31.18618 -30.94082 -30.01425 -27.70587 -26.92795 -25.24641 -23.89419 -23.40291 -21.84130 -21.49993 -20.51827 -19.79855 -18.44453 -18.03809 -17.80285 -17.53000 -16.87477 -16.84096 -16.60251 -16.52480 -16.32347 -15.89333 -15.46127 -14.95505 -14.71238 -14.66606 -14.44516 -14.30758 -14.16152 -13.93635 -13.84547 -13.48554 -13.35284 -13.13945 -13.13530 -13.04081 -12.91041 -12.86474 -12.59448 -12.35916 -12.23194 -12.06145 -11.91623 -11.68687 -11.64882 -11.14386 -11.04702 -10.94392 -10.52668 -10.23946 -10.09861 -9.75522 -8.64581 -8.33187 -6.10916 1.28641 1.42806 1.43779 1.48922 1.57544 1.64283 1.65064 2.27424 2.32448 2.80064 3.01430 3.28911 3.36344 3.48752 3.64566 3.78071 3.85407 3.97527 4.04452 4.18112 4.22262 4.26705 4.29525 4.32076 4.35845 4.47295 4.49178 4.51660 4.55302 4.69341 4.71893 4.77122 4.84365 4.89110 4.97917 5.00890 5.06266 5.16011 5.21303 5.25764 5.30104 5.43970 5.45365 6.09958 6.21776 6.40165 6.54627 7.02877 7.08600 7.28742 8.76247 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.034070 B = 0.001485 C = 0.001459 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.628173 B =18851.122076 C =19190.657142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.048 3.952 3 O -0.396 6.396 4 C 0.078 3.922 5 H 0.115 0.885 6 C -0.168 4.168 7 C 0.521 3.479 8 O -0.578 6.578 9 N -0.615 5.615 10 C 0.090 3.910 11 C -0.124 4.124 12 C -0.096 4.096 13 H 0.109 0.891 14 C 0.134 3.866 15 N -0.707 5.707 16 C 0.533 3.467 17 O -0.568 6.568 18 C -0.128 4.128 19 S -0.157 6.157 20 C -0.544 4.544 21 H 0.085 0.915 22 C 0.013 3.987 23 N -0.912 5.912 24 Si 0.998 3.002 25 H -0.255 1.255 26 H -0.276 1.276 27 H -0.275 1.275 28 C 0.111 3.889 29 H 0.096 0.904 30 H 0.056 0.944 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.091 0.909 38 H 0.097 0.903 39 H 0.113 0.887 40 H 0.081 0.919 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.419 0.581 44 H 0.114 0.886 45 H 0.110 0.890 46 H 0.270 0.730 47 H 0.068 0.932 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.591 -23.205 14.706 35.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.315 6.315 4 C 0.017 3.983 5 H 0.133 0.867 6 C -0.226 4.226 7 C 0.310 3.690 8 O -0.457 6.457 9 N -0.350 5.350 10 C -0.031 4.031 11 C -0.162 4.162 12 C -0.115 4.115 13 H 0.127 0.873 14 C 0.009 3.991 15 N -0.361 5.361 16 C 0.319 3.681 17 O -0.447 6.447 18 C -0.280 4.280 19 S 0.070 5.930 20 C -0.692 4.692 21 H 0.103 0.897 22 C -0.192 4.192 23 N -0.549 5.549 24 Si 0.820 3.180 25 H -0.178 1.178 26 H -0.201 1.201 27 H -0.200 1.200 28 C -0.012 4.012 29 H 0.114 0.886 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.090 0.910 34 H 0.069 0.931 35 H 0.111 0.889 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.115 0.885 39 H 0.131 0.869 40 H 0.099 0.901 41 H 0.083 0.917 42 H 0.075 0.925 43 H 0.256 0.744 44 H 0.132 0.868 45 H 0.128 0.872 46 H 0.079 0.921 47 H 0.086 0.914 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -23.340 -20.535 14.998 34.516 hybrid contribution 0.942 -1.420 -0.980 1.966 sum -22.398 -21.955 14.018 34.354 Atomic orbital electron populations 1.21779 0.93391 1.03466 1.02334 1.22832 0.96158 0.82111 1.01667 1.88038 1.19517 1.28782 1.95194 1.21945 0.83322 0.95130 0.97857 0.86713 1.22285 1.02751 1.04251 0.93289 1.20798 0.80731 0.88833 0.78671 1.90711 1.51450 1.47238 1.56325 1.48480 1.06557 1.25975 1.53945 1.22528 0.84375 0.94419 1.01818 1.22825 0.96474 1.00018 0.96852 1.22429 0.92756 0.96209 1.00132 0.87299 1.21192 0.85134 0.96067 0.96681 1.45601 1.19789 1.11678 1.59077 1.20070 0.83810 0.85999 0.78228 1.90709 1.79427 1.18224 1.56318 1.23367 0.97113 1.03489 1.03986 1.85641 1.19433 1.12715 1.75190 1.23246 1.06404 0.96661 1.42871 0.89733 1.26121 1.00720 0.95915 0.96399 1.70198 1.30439 1.09014 1.45261 0.84910 0.76890 0.78685 0.77488 1.17831 1.20149 1.20019 1.22126 0.94843 0.89410 0.94845 0.88577 0.92464 0.93207 0.92041 0.90980 0.93079 0.88860 0.88963 0.89052 0.88452 0.86902 0.90056 0.91741 0.92542 0.74380 0.86812 0.87160 0.92065 0.91352 0.91542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 10.28 71.98 0.74 -0.78 16 2 C 0.05 0.49 6.47 71.98 0.47 0.96 16 3 O -0.40 -7.41 9.55 -130.24 -1.24 -8.65 16 4 C 0.08 1.04 2.53 29.84 0.08 1.12 16 5 H 0.12 0.75 7.48 -2.39 -0.02 0.73 16 6 C -0.17 -1.45 9.44 71.98 0.68 -0.77 16 7 C 0.52 10.77 7.17 87.66 0.63 11.40 16 8 O -0.58 -18.55 16.84 15.70 0.26 -18.28 16 9 N -0.61 -8.95 3.33 -811.79 -2.70 -11.65 16 10 C 0.09 0.51 6.06 86.73 0.53 1.03 16 11 C -0.12 -0.77 6.37 31.78 0.20 -0.57 16 12 C -0.10 -1.06 3.05 -9.40 -0.03 -1.09 16 13 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 14 C 0.13 2.49 5.13 86.38 0.44 2.93 16 15 N -0.71 -14.80 5.50 -463.06 -2.55 -17.35 16 16 C 0.53 18.23 7.85 87.66 0.69 18.92 16 17 O -0.57 -25.49 15.86 -3.04 -0.05 -25.54 16 18 C -0.13 -4.75 6.16 71.24 0.44 -4.31 16 19 S -0.16 -8.53 20.57 -56.49 -1.16 -9.69 16 20 C -0.54 -30.38 9.50 67.95 0.65 -29.73 16 21 H 0.08 4.35 7.80 -2.91 -0.02 4.32 16 22 C 0.01 0.73 5.49 84.86 0.47 1.20 16 23 N -0.91 -55.59 13.22 21.65 0.29 -55.31 16 24 Si 1.00 42.78 29.55 68.60 2.03 44.81 16 25 H -0.25 -10.09 7.11 99.48 0.71 -9.39 16 26 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 27 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 28 C 0.11 1.78 6.36 86.86 0.55 2.33 16 29 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.46 8.08 -2.39 -0.02 0.45 16 33 H 0.07 0.41 7.98 -2.39 -0.02 0.39 16 34 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.09 0.40 7.98 -2.39 -0.02 0.38 16 36 H 0.09 0.44 5.52 -2.39 -0.01 0.43 16 37 H 0.09 0.27 6.04 -2.39 -0.01 0.26 16 38 H 0.10 0.12 7.93 -2.39 -0.02 0.10 16 39 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 40 H 0.08 0.64 7.91 -2.39 -0.02 0.62 16 41 H 0.06 1.34 7.97 -2.39 -0.02 1.32 16 42 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 43 H 0.42 5.42 8.47 -92.71 -0.79 4.64 16 44 H 0.11 3.68 8.14 -2.40 -0.02 3.66 16 45 H 0.11 3.64 8.14 -2.40 -0.02 3.62 16 46 H 0.27 15.27 8.31 -92.70 -0.77 14.49 16 47 H 0.07 1.19 8.04 -2.39 -0.02 1.17 16 48 H 0.07 1.30 8.09 -2.39 -0.02 1.28 16 Total: -1.00 -88.95 408.49 1.57 -87.38 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: 0.17 Total: 11.65 kcal Atomic # 6 Polarization: -3.89 SS G_CDS: 6.52 Total: 2.63 kcal Atomic # 7 Polarization: -79.35 SS G_CDS: -4.96 Total: -84.31 kcal Atomic # 8 Polarization: -51.45 SS G_CDS: -1.03 Total: -52.48 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: -8.53 SS G_CDS: -1.16 Total: -9.69 kcal Total: -88.95 1.57 -87.38 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580025654.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.549 kcal (2) G-P(sol) polarization free energy of solvation -88.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds