Wall clock time and date at job start Sat Apr 11 2020 07:13:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46807 * 29.99983 * 4 3 2 6 6 C 1.53002 * 109.47072 * 269.99829 * 4 3 2 7 7 C 1.50700 * 109.47036 * 149.99828 * 4 3 2 8 8 O 1.21284 * 120.00340 * 4.99714 * 7 4 3 9 9 N 1.34783 * 119.99696 * 185.00262 * 7 4 3 10 10 C 1.46499 * 119.99738 * 179.97438 * 9 7 4 11 11 C 1.53000 * 110.88836 * 303.87858 * 10 9 7 12 12 C 1.55156 * 111.00470 * 179.97438 * 10 9 7 13 13 C 1.54318 * 102.94227 * 277.43202 * 12 10 9 14 14 N 1.47017 * 107.27470 * 337.80376 * 13 12 10 15 15 C 1.34777 * 125.65236 * 178.99130 * 14 13 12 16 16 O 1.21278 * 120.00207 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99656 * 359.97060 * 15 14 13 18 18 S 1.80999 * 109.46884 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00158 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99852 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00463 * 179.97438 * 19 18 17 22 22 N 1.31638 * 119.99717 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00327 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47131 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47047 * 120.00566 * 23 21 19 26 26 H 1.48502 * 109.47176 * 240.00450 * 23 21 19 27 27 C 1.47427 * 108.69974 * 358.94434 * 14 13 12 28 28 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 29 29 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 33 33 H 1.09000 * 109.46986 * 179.97438 * 6 4 3 34 34 H 1.08997 * 109.46833 * 300.00204 * 6 4 3 35 35 H 1.09001 * 109.46890 * 59.99978 * 6 4 3 36 36 H 0.96996 * 119.99850 * 359.97438 * 9 7 4 37 37 H 1.09001 * 109.47025 * 59.29818 * 11 10 9 38 38 H 1.09001 * 109.47258 * 179.29881 * 11 10 9 39 39 H 1.08994 * 109.46937 * 299.30190 * 11 10 9 40 40 H 1.09006 * 110.71648 * 35.79336 * 12 10 9 41 41 H 1.08992 * 110.72361 * 158.88697 * 12 10 9 42 42 H 1.09006 * 109.88347 * 97.22486 * 13 12 10 43 43 H 1.09007 * 109.87876 * 218.38588 * 13 12 10 44 44 H 1.08993 * 109.47598 * 300.00461 * 17 15 14 45 45 H 1.09001 * 109.47025 * 60.00425 * 17 15 14 46 46 H 0.96997 * 119.99606 * 180.02562 * 22 21 19 47 47 H 1.09002 * 110.36309 * 265.28979 * 27 14 13 48 48 H 1.08997 * 110.36566 * 142.97398 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.9399 1.5002 1.4417 7 6 3.8342 2.7264 -0.7110 8 8 2.9856 3.5049 -1.0916 9 7 5.1380 2.9939 -0.9235 10 6 5.5301 4.2247 -1.6147 11 6 4.8559 4.3194 -2.9848 12 6 7.0730 4.3216 -1.7457 13 6 7.5015 4.8861 -0.3749 14 7 6.3324 5.5653 0.2024 15 6 6.2915 6.1739 1.4042 16 8 5.2682 6.7051 1.7804 17 6 7.5174 6.1944 2.2805 18 16 7.1467 7.0783 3.8158 19 6 8.7070 6.9538 4.6249 20 1 9.5258 6.4405 4.1428 21 6 8.8842 7.5163 5.8813 22 7 7.8863 8.1424 6.4688 23 14 10.5385 7.3849 6.7387 24 1 11.4868 6.6386 5.8732 25 1 11.0716 8.7466 6.9972 26 1 10.3726 6.6655 8.0272 27 6 5.2124 5.4713 -0.7517 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.0265 1.5858 1.4413 34 1 3.5076 2.3586 1.9558 35 1 3.6482 0.5842 1.9555 36 1 5.8167 2.3715 -0.6189 37 1 3.7732 4.3057 -2.8588 38 1 5.1531 5.2477 -3.4727 39 1 5.1608 3.4722 -3.5991 40 1 7.5087 3.3360 -1.9102 41 1 7.3497 5.0031 -2.5501 42 1 7.8179 4.0730 0.2784 43 1 8.3167 5.5980 -0.5056 44 1 7.8149 5.1719 2.5130 45 1 8.3296 6.6990 1.7572 46 1 8.0102 8.5358 7.3467 47 1 5.1699 6.3639 -1.3759 48 1 4.2711 5.3345 -0.2194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001585796779.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:20 Heat of formation + Delta-G solvation = -116.295912 kcal Electronic energy + Delta-G solvation = -28604.360354 eV Core-core repulsion = 24592.818851 eV Total energy + Delta-G solvation = -4011.541503 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.88560 -39.45089 -38.19234 -37.16196 -34.35616 -33.00957 -32.43313 -31.53679 -30.17457 -29.79046 -29.35520 -26.18118 -25.43067 -24.89489 -23.32695 -22.99889 -21.25166 -19.93400 -19.29093 -17.93773 -17.43830 -17.27597 -16.58475 -16.40608 -16.07754 -15.63027 -15.11885 -14.84591 -14.81003 -14.52787 -14.07301 -13.96472 -13.79919 -13.51748 -13.44542 -12.92972 -12.89686 -12.76827 -12.64770 -12.50801 -12.40286 -12.36883 -12.24317 -11.83497 -11.72856 -11.66264 -11.57103 -11.36795 -11.09110 -11.08018 -11.01227 -10.76762 -10.13854 -9.81668 -9.56439 -9.46660 -9.29881 -9.07926 -8.45761 -8.22238 -6.50382 -6.21996 -3.92647 2.39500 2.54048 2.91706 3.09390 3.20602 3.25338 3.30204 3.55390 3.61632 3.99631 4.19575 4.29204 4.39387 4.52440 4.58141 4.63490 4.78673 4.89687 4.90415 5.01244 5.02945 5.11492 5.13016 5.18812 5.32890 5.37160 5.41979 5.43981 5.49158 5.52058 5.57274 5.59634 5.61417 5.69466 5.83342 5.89689 5.90869 5.95189 6.03342 6.12181 6.30534 6.42632 6.77113 7.25011 7.58989 7.68852 8.02532 8.34791 8.58982 9.23105 10.85476 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012825 B = 0.002583 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.786954 B =10839.162181 C =12066.435171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.356 6.356 4 C 0.073 3.927 5 H 0.083 0.917 6 C -0.172 4.172 7 C 0.518 3.482 8 O -0.509 6.509 9 N -0.715 5.715 10 C 0.163 3.837 11 C -0.156 4.156 12 C -0.131 4.131 13 C 0.100 3.900 14 N -0.625 5.625 15 C 0.547 3.453 16 O -0.512 6.512 17 C -0.145 4.145 18 S -0.061 6.061 19 C -0.534 4.534 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.103 3.897 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.070 0.930 36 H 0.400 0.600 37 H 0.085 0.915 38 H 0.068 0.932 39 H 0.059 0.941 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.068 0.932 43 H 0.073 0.927 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.268 0.732 47 H 0.074 0.926 48 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.016 -18.979 -20.073 27.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.022 4.022 3 O -0.275 6.275 4 C 0.012 3.988 5 H 0.101 0.899 6 C -0.230 4.230 7 C 0.303 3.697 8 O -0.382 6.382 9 N -0.369 5.369 10 C 0.076 3.924 11 C -0.214 4.214 12 C -0.169 4.169 13 C -0.023 4.023 14 N -0.363 5.363 15 C 0.335 3.665 16 O -0.386 6.386 17 C -0.296 4.296 18 S 0.166 5.834 19 C -0.682 4.682 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.020 4.020 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.235 0.765 37 H 0.104 0.896 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.114 0.886 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.105 0.895 45 H 0.106 0.894 46 H 0.078 0.922 47 H 0.092 0.908 48 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.375 -17.305 -19.533 26.863 hybrid contribution 2.931 -1.288 0.352 3.221 sum -3.443 -18.593 -19.181 26.935 Atomic orbital electron populations 1.21728 0.93358 1.02190 1.03570 1.22590 0.96065 0.83516 0.99981 1.88084 1.18195 1.26272 1.94919 1.21862 0.83958 0.96107 0.96883 0.89889 1.22242 1.01724 1.04187 0.94813 1.20354 0.82430 0.87706 0.79161 1.90699 1.50151 1.48354 1.49023 1.45825 1.07176 1.23351 1.60567 1.21401 0.94266 0.84211 0.92486 1.22059 1.03622 1.02161 0.93586 1.22987 0.93422 1.02750 0.97764 1.21995 0.89465 0.97082 0.93785 1.48476 1.12681 1.57386 1.17735 1.20023 0.89982 0.77045 0.79417 1.90728 1.32789 1.43565 1.71472 1.23493 0.97907 1.05563 1.02590 1.85465 1.18560 1.70401 1.08988 1.22887 0.97749 1.42163 1.05426 0.90931 1.25003 0.97823 0.94546 0.96282 1.70035 1.30876 1.33939 1.15360 0.86115 0.82136 0.78046 0.79174 1.19645 1.20558 1.20567 1.22536 0.91919 0.96273 0.91320 0.91672 0.91043 0.91580 0.93387 0.93141 0.90939 0.90598 0.91150 0.76535 0.89598 0.91257 0.92147 0.89363 0.88645 0.91330 0.90889 0.89484 0.89369 0.92225 0.90807 0.89298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 10.28 37.16 0.38 -0.72 16 2 C 0.06 0.44 6.47 37.16 0.24 0.68 16 3 O -0.36 -4.20 9.53 -55.09 -0.52 -4.72 16 4 C 0.07 0.70 3.13 -27.88 -0.09 0.61 16 5 H 0.08 0.52 7.79 -51.93 -0.40 0.12 16 6 C -0.17 -1.57 9.48 37.16 0.35 -1.22 16 7 C 0.52 6.09 6.55 -10.98 -0.07 6.02 16 8 O -0.51 -8.07 13.36 -14.30 -0.19 -8.26 16 9 N -0.71 -6.37 5.14 -45.62 -0.23 -6.60 16 10 C 0.16 1.52 0.83 -129.67 -0.11 1.42 16 11 C -0.16 -1.35 8.52 37.16 0.32 -1.04 16 12 C -0.13 -0.87 5.97 -24.90 -0.15 -1.02 16 13 C 0.10 0.98 6.48 -3.07 -0.02 0.96 16 14 N -0.62 -9.16 3.33 -170.52 -0.57 -9.73 16 15 C 0.55 10.88 7.87 -10.99 -0.09 10.80 16 16 O -0.51 -12.51 16.12 5.56 0.09 -12.42 16 17 C -0.14 -2.99 5.35 36.01 0.19 -2.80 16 18 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 19 C -0.53 -15.22 9.50 30.94 0.29 -14.93 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.28 13.22 55.49 0.73 -25.55 16 23 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 27 C 0.10 1.41 5.84 -2.53 -0.01 1.39 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.05 0.31 8.08 -51.93 -0.42 -0.11 16 32 H 0.05 0.33 7.87 -51.93 -0.41 -0.07 16 33 H 0.07 0.55 7.92 -51.93 -0.41 0.14 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 0.53 7.87 -51.93 -0.41 0.12 16 36 H 0.40 2.43 8.29 -40.82 -0.34 2.09 16 37 H 0.09 0.99 6.01 -51.93 -0.31 0.68 16 38 H 0.07 0.51 8.13 -51.93 -0.42 0.09 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.38 8.09 -51.93 -0.42 -0.04 16 41 H 0.10 0.53 8.04 -51.93 -0.42 0.12 16 42 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.65 8.14 -51.92 -0.42 1.22 16 45 H 0.09 1.69 8.14 -51.92 -0.42 1.26 16 46 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 47 H 0.07 0.97 8.03 -51.93 -0.42 0.55 16 48 H 0.09 1.54 6.76 -51.93 -0.35 1.19 16 LS Contribution 406.16 15.07 6.12 6.12 Total: -1.00 -38.35 406.16 -8.74 -47.10 By element: Atomic # 1 Polarization: 7.56 SS G_CDS: -8.08 Total: -0.52 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 1.15 Total: 2.13 kcal Atomic # 7 Polarization: -41.81 SS G_CDS: -0.07 Total: -41.88 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: -0.63 Total: -25.40 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -38.35 -8.74 -47.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585796779.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.199 kcal (2) G-P(sol) polarization free energy of solvation -38.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds