Wall clock time and date at job start Sat Apr 11 2020 07:13:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42898 * 109.47319 * 2 1 4 4 C 1.42902 * 114.00186 * 180.02562 * 3 2 1 5 5 H 1.08993 * 109.46807 * 29.99983 * 4 3 2 6 6 C 1.53002 * 109.47072 * 269.99829 * 4 3 2 7 7 C 1.50700 * 109.47036 * 149.99828 * 4 3 2 8 8 O 1.21284 * 120.00340 * 4.99714 * 7 4 3 9 9 N 1.34783 * 119.99696 * 185.00262 * 7 4 3 10 10 C 1.46499 * 119.99738 * 179.97438 * 9 7 4 11 11 C 1.53000 * 110.88836 * 303.87858 * 10 9 7 12 12 C 1.55156 * 111.00470 * 179.97438 * 10 9 7 13 13 C 1.54318 * 102.94227 * 277.43202 * 12 10 9 14 14 N 1.47017 * 107.27470 * 337.80376 * 13 12 10 15 15 C 1.34777 * 125.65236 * 178.99130 * 14 13 12 16 16 O 1.21278 * 120.00207 * 179.97438 * 15 14 13 17 17 C 1.50700 * 119.99656 * 359.97060 * 15 14 13 18 18 S 1.80999 * 109.46884 * 180.02562 * 17 15 14 19 19 C 1.76198 * 100.00158 * 180.02562 * 18 17 15 20 20 H 1.07998 * 119.99852 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00463 * 179.97438 * 19 18 17 22 22 N 1.31638 * 119.99717 * 0.02562 * 21 19 18 23 23 Si 1.86799 * 120.00327 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47131 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47047 * 120.00566 * 23 21 19 26 26 H 1.48502 * 109.47176 * 240.00450 * 23 21 19 27 27 C 1.47427 * 108.69974 * 358.94434 * 14 13 12 28 28 H 1.08998 * 109.47533 * 59.99936 * 1 2 3 29 29 H 1.08996 * 109.47853 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47153 * 300.00307 * 1 2 3 31 31 H 1.09002 * 109.47153 * 239.99693 * 2 1 3 32 32 H 1.09001 * 109.46832 * 119.99884 * 2 1 3 33 33 H 1.09000 * 109.46986 * 179.97438 * 6 4 3 34 34 H 1.08997 * 109.46833 * 300.00204 * 6 4 3 35 35 H 1.09001 * 109.46890 * 59.99978 * 6 4 3 36 36 H 0.96996 * 119.99850 * 359.97438 * 9 7 4 37 37 H 1.09001 * 109.47025 * 59.29818 * 11 10 9 38 38 H 1.09001 * 109.47258 * 179.29881 * 11 10 9 39 39 H 1.08994 * 109.46937 * 299.30190 * 11 10 9 40 40 H 1.09006 * 110.71648 * 35.79336 * 12 10 9 41 41 H 1.08992 * 110.72361 * 158.88697 * 12 10 9 42 42 H 1.09006 * 109.88347 * 97.22486 * 13 12 10 43 43 H 1.09007 * 109.87876 * 218.38588 * 13 12 10 44 44 H 1.08993 * 109.47598 * 300.00461 * 17 15 14 45 45 H 1.09001 * 109.47025 * 60.00425 * 17 15 14 46 46 H 0.96997 * 119.99606 * 180.02562 * 22 21 19 47 47 H 1.09002 * 110.36309 * 265.28979 * 27 14 13 48 48 H 1.08997 * 110.36566 * 142.97398 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6017 -0.5147 6 6 3.9399 1.5002 1.4417 7 6 3.8342 2.7264 -0.7110 8 8 2.9856 3.5049 -1.0916 9 7 5.1380 2.9939 -0.9235 10 6 5.5301 4.2247 -1.6147 11 6 4.8559 4.3194 -2.9848 12 6 7.0730 4.3216 -1.7457 13 6 7.5015 4.8861 -0.3749 14 7 6.3324 5.5653 0.2024 15 6 6.2915 6.1739 1.4042 16 8 5.2682 6.7051 1.7804 17 6 7.5174 6.1944 2.2805 18 16 7.1467 7.0783 3.8158 19 6 8.7070 6.9538 4.6249 20 1 9.5258 6.4405 4.1428 21 6 8.8842 7.5163 5.8813 22 7 7.8863 8.1424 6.4688 23 14 10.5385 7.3849 6.7387 24 1 11.4868 6.6386 5.8732 25 1 11.0716 8.7466 6.9972 26 1 10.3726 6.6655 8.0272 27 6 5.2124 5.4713 -0.7517 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3635 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.0265 1.5858 1.4413 34 1 3.5076 2.3586 1.9558 35 1 3.6482 0.5842 1.9555 36 1 5.8167 2.3715 -0.6189 37 1 3.7732 4.3057 -2.8588 38 1 5.1531 5.2477 -3.4727 39 1 5.1608 3.4722 -3.5991 40 1 7.5087 3.3360 -1.9102 41 1 7.3497 5.0031 -2.5501 42 1 7.8179 4.0730 0.2784 43 1 8.3167 5.5980 -0.5056 44 1 7.8149 5.1719 2.5130 45 1 8.3296 6.6990 1.7572 46 1 8.0102 8.5358 7.3467 47 1 5.1699 6.3639 -1.3759 48 1 4.2711 5.3345 -0.2194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585796779.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:19 Heat of formation + Delta-G solvation = -144.761777 kcal Electronic energy + Delta-G solvation = -28605.594726 eV Core-core repulsion = 24592.818851 eV Total energy + Delta-G solvation = -4012.775875 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.82824 -40.60035 -39.20988 -38.23096 -35.41828 -34.59278 -33.82595 -32.37945 -31.08624 -30.83577 -30.43794 -27.78723 -27.06125 -25.71727 -24.23039 -23.64342 -22.03893 -20.96979 -20.53725 -19.64251 -18.48663 -18.08301 -17.92817 -17.47506 -16.99554 -16.89163 -16.60524 -16.21606 -15.97368 -15.67982 -15.55170 -15.13191 -14.67721 -14.51978 -14.30527 -14.21421 -13.98719 -13.86524 -13.54651 -13.41617 -13.33359 -13.21010 -13.15156 -13.10311 -12.93658 -12.91764 -12.61196 -12.45048 -12.37094 -12.32285 -12.04412 -11.82129 -11.71965 -11.16620 -11.02760 -10.87539 -10.40115 -10.29097 -10.25623 -9.67316 -8.70207 -8.35167 -6.14660 1.22565 1.41793 1.44461 1.51938 1.54148 1.56923 1.81463 2.05785 2.26422 2.88689 2.99149 3.15421 3.33343 3.50522 3.64562 3.85146 3.86779 3.89516 3.96772 4.17884 4.18985 4.27572 4.29783 4.33200 4.41711 4.46807 4.50857 4.52643 4.67294 4.71564 4.73978 4.80973 4.83437 4.85645 4.98486 4.99577 5.07614 5.13793 5.24820 5.28397 5.35912 5.41190 5.52621 6.11872 6.19459 6.36729 6.55011 7.05689 7.09267 7.22455 8.74527 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012825 B = 0.002583 C = 0.002320 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2182.786954 B =10839.162181 C =12066.435171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.048 3.952 3 O -0.396 6.396 4 C 0.074 3.926 5 H 0.126 0.874 6 C -0.167 4.167 7 C 0.509 3.491 8 O -0.560 6.560 9 N -0.700 5.700 10 C 0.168 3.832 11 C -0.150 4.150 12 C -0.111 4.111 13 C 0.084 3.916 14 N -0.613 5.613 15 C 0.542 3.458 16 O -0.574 6.574 17 C -0.113 4.113 18 S -0.160 6.160 19 C -0.540 4.540 20 H 0.086 0.914 21 C 0.010 3.990 22 N -0.914 5.914 23 Si 1.002 2.998 24 H -0.253 1.253 25 H -0.275 1.275 26 H -0.274 1.274 27 C 0.098 3.902 28 H 0.052 0.948 29 H 0.097 0.903 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.091 0.909 34 H 0.032 0.968 35 H 0.088 0.912 36 H 0.418 0.582 37 H 0.051 0.949 38 H 0.082 0.918 39 H 0.085 0.915 40 H 0.130 0.870 41 H 0.116 0.884 42 H 0.087 0.913 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.109 0.891 46 H 0.271 0.729 47 H 0.076 0.924 48 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.170 -22.140 -22.106 31.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.028 4.028 3 O -0.315 6.315 4 C 0.013 3.987 5 H 0.143 0.857 6 C -0.225 4.225 7 C 0.296 3.704 8 O -0.438 6.438 9 N -0.355 5.355 10 C 0.081 3.919 11 C -0.208 4.208 12 C -0.149 4.149 13 C -0.037 4.037 14 N -0.347 5.347 15 C 0.330 3.670 16 O -0.453 6.453 17 C -0.264 4.264 18 S 0.067 5.933 19 C -0.688 4.688 20 H 0.104 0.896 21 C -0.194 4.194 22 N -0.550 5.550 23 Si 0.824 3.176 24 H -0.176 1.176 25 H -0.201 1.201 26 H -0.200 1.200 27 C -0.026 4.026 28 H 0.071 0.929 29 H 0.116 0.884 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.052 0.948 35 H 0.107 0.893 36 H 0.256 0.744 37 H 0.070 0.930 38 H 0.101 0.899 39 H 0.104 0.896 40 H 0.148 0.852 41 H 0.134 0.866 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.128 0.872 45 H 0.127 0.873 46 H 0.080 0.920 47 H 0.094 0.906 48 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -2.465 -20.532 -21.621 29.919 hybrid contribution 1.660 -0.342 0.862 1.901 sum -0.805 -20.874 -20.759 29.450 Atomic orbital electron populations 1.21776 0.93495 1.03458 1.02230 1.22827 0.96122 0.82215 1.01626 1.88056 1.19584 1.28731 1.95119 1.22003 0.83429 0.96301 0.96950 0.85666 1.22227 1.02596 1.03193 0.94500 1.20950 0.82844 0.88034 0.78598 1.90686 1.51765 1.50086 1.51229 1.45738 1.06771 1.23302 1.59729 1.21412 0.96692 0.82166 0.91625 1.22003 1.01372 1.04026 0.93423 1.23046 0.90215 1.05352 0.96266 1.22500 0.87758 0.97721 0.95720 1.48404 1.14875 1.55461 1.15989 1.19928 0.88862 0.77321 0.80885 1.90705 1.34615 1.46688 1.73317 1.23258 0.98694 1.05644 0.98824 1.85754 1.20636 1.72654 1.14266 1.23203 0.97508 1.42269 1.05841 0.89605 1.26196 1.02351 0.93784 0.97092 1.70214 1.33703 1.35166 1.15933 0.84859 0.76570 0.78333 0.77880 1.17629 1.20066 1.19962 1.22657 0.89724 0.99124 0.91099 0.92888 0.88429 0.93053 0.91394 0.91598 0.89063 0.94833 0.89267 0.74407 0.93028 0.89873 0.89621 0.85229 0.86558 0.89472 0.89499 0.87164 0.87254 0.92034 0.90627 0.94027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 10.28 71.98 0.74 -1.46 16 2 C 0.05 0.70 6.47 71.98 0.47 1.17 16 3 O -0.40 -9.42 9.53 -129.99 -1.24 -10.66 16 4 C 0.07 1.33 3.13 29.85 0.09 1.43 16 5 H 0.13 1.15 7.79 -2.39 -0.02 1.13 16 6 C -0.17 -2.95 9.48 71.98 0.68 -2.26 16 7 C 0.51 11.91 6.55 87.66 0.57 12.49 16 8 O -0.56 -18.92 13.36 15.95 0.21 -18.70 16 9 N -0.70 -10.99 5.14 -416.64 -2.14 -13.13 16 10 C 0.17 2.76 0.83 4.99 0.00 2.77 16 11 C -0.15 -2.31 8.52 71.98 0.61 -1.69 16 12 C -0.11 -0.91 5.97 31.78 0.19 -0.72 16 13 C 0.08 1.31 6.48 86.73 0.56 1.87 16 14 N -0.61 -17.41 3.33 -811.80 -2.70 -20.11 16 15 C 0.54 21.97 7.87 87.66 0.69 22.66 16 16 O -0.57 -29.93 16.12 -3.02 -0.05 -29.98 16 17 C -0.11 -4.61 5.35 71.24 0.38 -4.23 16 18 S -0.16 -9.14 20.57 -56.49 -1.16 -10.30 16 19 C -0.54 -30.84 9.50 67.95 0.65 -30.20 16 20 H 0.09 4.49 7.80 -2.91 -0.02 4.47 16 21 C 0.01 0.58 5.49 84.86 0.47 1.05 16 22 N -0.91 -56.79 13.22 21.65 0.29 -56.51 16 23 Si 1.00 43.36 29.55 68.60 2.03 45.38 16 24 H -0.25 -10.05 7.11 99.48 0.71 -9.34 16 25 H -0.28 -11.61 7.11 99.48 0.71 -10.90 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 27 C 0.10 2.70 5.84 86.85 0.51 3.21 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 0.71 8.08 -2.39 -0.02 0.69 16 32 H 0.07 0.74 7.87 -2.39 -0.02 0.72 16 33 H 0.09 1.20 7.92 -2.39 -0.02 1.18 16 34 H 0.03 0.86 8.14 -2.39 -0.02 0.85 16 35 H 0.09 1.21 7.87 -2.39 -0.02 1.19 16 36 H 0.42 3.41 8.29 -92.71 -0.77 2.64 16 37 H 0.05 1.20 6.01 -2.39 -0.01 1.19 16 38 H 0.08 1.03 8.13 -2.39 -0.02 1.01 16 39 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.13 0.15 8.09 -2.38 -0.02 0.13 16 41 H 0.12 0.61 8.04 -2.39 -0.02 0.59 16 42 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 43 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 44 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 45 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 46 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 47 H 0.08 2.03 8.03 -2.39 -0.02 2.01 16 48 H 0.04 1.57 6.76 -2.39 -0.02 1.55 16 Total: -1.00 -93.27 406.16 2.03 -91.24 By element: Atomic # 1 Polarization: 16.50 SS G_CDS: 0.18 Total: 16.68 kcal Atomic # 6 Polarization: -0.54 SS G_CDS: 6.61 Total: 6.08 kcal Atomic # 7 Polarization: -85.19 SS G_CDS: -4.56 Total: -89.75 kcal Atomic # 8 Polarization: -58.26 SS G_CDS: -1.07 Total: -59.33 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.16 Total: -10.30 kcal Total: -93.27 2.03 -91.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585796779.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.520 kcal (2) G-P(sol) polarization free energy of solvation -93.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds