Wall clock time and date at job start Sat Apr 11 2020 07:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.47106 * 2 1 4 4 C 1.42897 * 113.99880 * 180.02562 * 3 2 1 5 5 H 1.09004 * 109.47194 * 30.00472 * 4 3 2 6 6 C 1.53000 * 109.47448 * 270.00383 * 4 3 2 7 7 C 1.50706 * 109.47139 * 150.00319 * 4 3 2 8 8 O 1.21285 * 119.99804 * 5.00055 * 7 4 3 9 9 N 1.34774 * 120.00065 * 184.99904 * 7 4 3 10 10 C 1.46503 * 120.00042 * 180.02562 * 9 7 4 11 11 C 1.53002 * 110.91508 * 56.09906 * 10 9 7 12 12 C 1.55153 * 111.00570 * 180.02562 * 10 9 7 13 13 C 1.54323 * 103.10236 * 82.48408 * 12 10 9 14 14 N 1.47486 * 107.03754 * 22.24109 * 13 12 10 15 15 C 1.34778 * 125.59520 * 181.08732 * 14 13 12 16 16 O 1.21278 * 119.99822 * 179.97438 * 15 14 13 17 17 C 1.50693 * 119.99827 * 359.92993 * 15 14 13 18 18 S 1.81004 * 109.47178 * 180.02562 * 17 15 14 19 19 C 1.76194 * 100.00130 * 180.02562 * 18 17 15 20 20 H 1.08002 * 120.00175 * 359.97438 * 19 18 17 21 21 C 1.38800 * 120.00185 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99723 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00058 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46970 * 90.00067 * 23 21 19 25 25 H 1.48502 * 109.46857 * 209.99320 * 23 21 19 26 26 H 1.48488 * 109.47012 * 329.99711 * 23 21 19 27 27 C 1.47428 * 108.75727 * 1.02624 * 14 13 12 28 28 H 1.09002 * 109.46431 * 299.99591 * 1 2 3 29 29 H 1.08997 * 109.47130 * 59.99124 * 1 2 3 30 30 H 1.08993 * 109.47011 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46628 * 240.00911 * 2 1 3 32 32 H 1.08992 * 109.47376 * 120.00465 * 2 1 3 33 33 H 1.09003 * 109.47040 * 59.99937 * 6 4 3 34 34 H 1.08996 * 109.47481 * 180.02562 * 6 4 3 35 35 H 1.09004 * 109.46996 * 300.00210 * 6 4 3 36 36 H 0.96998 * 120.00375 * 0.02562 * 9 7 4 37 37 H 1.08993 * 109.46981 * 183.90402 * 11 10 9 38 38 H 1.09001 * 109.46773 * 303.90447 * 11 10 9 39 39 H 1.08999 * 109.46721 * 63.89988 * 11 10 9 40 40 H 1.09002 * 110.72030 * 200.93675 * 12 10 9 41 41 H 1.09003 * 110.72184 * 324.03326 * 12 10 9 42 42 H 1.09000 * 109.88693 * 141.69901 * 13 12 10 43 43 H 1.09005 * 109.88012 * 262.86516 * 13 12 10 44 44 H 1.09000 * 109.47129 * 299.99930 * 17 15 14 45 45 H 1.09000 * 109.47692 * 59.99857 * 17 15 14 46 46 H 0.97006 * 119.99851 * 180.02562 * 22 21 19 47 47 H 1.09000 * 110.36462 * 217.05803 * 27 14 13 48 48 H 1.08998 * 110.36847 * 94.73011 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.8631 0.6017 -0.5148 6 6 3.9400 1.5001 1.4417 7 6 3.8342 2.7266 -0.7109 8 8 2.9855 3.5051 -1.0914 9 7 5.1379 2.9941 -0.9234 10 6 5.5300 4.2255 -1.6134 11 6 4.9624 5.4551 -0.9014 12 6 7.0729 4.3218 -1.7457 13 6 7.3717 3.4599 -2.9905 14 7 6.1281 3.3963 -3.7808 15 6 5.9659 2.7199 -4.9352 16 8 4.8941 2.7368 -5.5024 17 6 7.1166 1.9434 -5.5215 18 16 6.5881 1.1518 -7.0611 19 6 8.0831 0.3374 -7.5152 20 1 8.9586 0.4272 -6.8893 21 6 8.1359 -0.4188 -8.6780 22 7 7.0689 -0.5279 -9.4411 23 14 9.7210 -1.2817 -9.1598 24 1 9.7426 -2.6438 -8.5684 25 1 9.7994 -1.3832 -10.6393 26 1 10.8810 -0.5043 -8.6548 27 6 5.0919 4.1932 -3.0990 28 1 -0.3632 0.5138 0.8901 29 1 -0.3633 0.5140 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8932 -0.5137 -0.8901 32 1 1.8933 -0.5139 0.8899 33 1 3.6482 0.5841 1.9555 34 1 5.0265 1.5866 1.4412 35 1 3.5077 2.3585 1.9559 36 1 5.8167 2.3714 -0.6195 37 1 5.2091 6.3509 -1.4711 38 1 3.8793 5.3614 -0.8224 39 1 5.3945 5.5286 0.0966 40 1 7.3824 5.3542 -1.9081 41 1 7.5622 3.9082 -0.8638 42 1 8.1649 3.9211 -3.5791 43 1 7.6698 2.4571 -2.6842 44 1 7.9448 2.6214 -5.7277 45 1 7.4392 1.1809 -4.8126 46 1 7.1057 -1.0567 -10.2535 47 1 4.1184 3.7129 -3.1970 48 1 5.0604 5.2034 -3.5072 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001585796781.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:26 Heat of formation + Delta-G solvation = -144.680171 kcal Electronic energy + Delta-G solvation = -28549.784524 eV Core-core repulsion = 24537.012187 eV Total energy + Delta-G solvation = -4012.772337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82146 -40.60074 -39.21397 -38.23146 -35.41106 -34.59536 -33.80908 -32.39440 -31.06885 -30.85360 -30.44674 -27.78504 -27.04152 -25.69040 -24.22883 -23.67196 -22.03945 -20.96758 -20.55518 -19.64796 -18.48068 -18.08032 -17.94065 -17.49789 -16.89590 -16.85038 -16.74890 -16.23376 -16.03825 -15.68388 -15.55929 -15.05348 -14.71306 -14.50215 -14.28317 -14.19512 -14.02973 -13.86389 -13.48131 -13.42955 -13.29412 -13.22130 -13.15809 -13.13682 -12.90303 -12.89085 -12.63042 -12.44972 -12.36650 -12.32001 -12.07642 -11.80369 -11.74354 -11.14899 -11.03453 -10.92410 -10.39374 -10.29494 -10.25963 -9.68500 -8.70577 -8.35137 -6.14847 1.22107 1.42802 1.44232 1.51958 1.54350 1.56100 1.79141 2.04826 2.26490 2.87088 2.99103 3.14731 3.33308 3.50714 3.63222 3.84283 3.87433 3.89181 4.00966 4.14971 4.18591 4.26919 4.28069 4.33110 4.41291 4.43127 4.50822 4.60045 4.66880 4.73727 4.78572 4.81274 4.83314 4.85989 4.96984 4.98428 5.07117 5.18858 5.21775 5.27444 5.35846 5.40665 5.52486 6.07952 6.18977 6.35153 6.54033 7.05553 7.08346 7.21745 8.74267 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011448 B = 0.002661 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2445.227740 B =10519.442595 C =11863.335594 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.048 3.952 3 O -0.392 6.392 4 C 0.065 3.935 5 H 0.099 0.901 6 C -0.158 4.158 7 C 0.510 3.490 8 O -0.560 6.560 9 N -0.700 5.700 10 C 0.169 3.831 11 C -0.151 4.151 12 C -0.112 4.112 13 C 0.085 3.915 14 N -0.614 5.614 15 C 0.541 3.459 16 O -0.575 6.575 17 C -0.113 4.113 18 S -0.160 6.160 19 C -0.542 4.542 20 H 0.086 0.914 21 C 0.011 3.989 22 N -0.913 5.913 23 Si 1.002 2.998 24 H -0.267 1.267 25 H -0.280 1.280 26 H -0.255 1.255 27 C 0.098 3.902 28 H 0.064 0.936 29 H 0.044 0.956 30 H 0.094 0.906 31 H 0.046 0.954 32 H 0.076 0.924 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.059 0.941 36 H 0.418 0.582 37 H 0.081 0.919 38 H 0.051 0.949 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.130 0.870 42 H 0.088 0.912 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.271 0.729 47 H 0.041 0.959 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.456 5.832 29.180 29.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.028 4.028 3 O -0.312 6.312 4 C 0.004 3.996 5 H 0.116 0.884 6 C -0.216 4.216 7 C 0.297 3.703 8 O -0.438 6.438 9 N -0.355 5.355 10 C 0.082 3.918 11 C -0.209 4.209 12 C -0.149 4.149 13 C -0.036 4.036 14 N -0.349 5.349 15 C 0.329 3.671 16 O -0.454 6.454 17 C -0.264 4.264 18 S 0.068 5.932 19 C -0.690 4.690 20 H 0.104 0.896 21 C -0.193 4.193 22 N -0.550 5.550 23 Si 0.823 3.177 24 H -0.192 1.192 25 H -0.205 1.205 26 H -0.179 1.179 27 C -0.026 4.026 28 H 0.084 0.916 29 H 0.063 0.937 30 H 0.112 0.888 31 H 0.065 0.935 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.118 0.882 35 H 0.078 0.922 36 H 0.256 0.744 37 H 0.100 0.900 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.148 0.852 42 H 0.106 0.894 43 H 0.106 0.894 44 H 0.128 0.872 45 H 0.128 0.872 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 0.070 6.468 27.867 28.608 hybrid contribution 1.611 -1.050 -0.415 1.967 sum 1.680 5.417 27.452 28.032 Atomic orbital electron populations 1.21762 0.93163 1.03433 1.02422 1.22788 0.96380 0.82430 1.01170 1.88012 1.19687 1.28263 1.95200 1.22099 0.83367 0.95572 0.98590 0.88373 1.22189 1.02975 1.03995 0.92409 1.20929 0.82827 0.87903 0.78691 1.90683 1.51670 1.50018 1.51402 1.45728 1.06793 1.23736 1.59254 1.21409 0.96444 0.85644 0.88351 1.22009 1.02054 0.95370 1.01468 1.23044 0.90838 1.03080 0.97968 1.22592 0.85772 1.02361 0.92919 1.48536 1.14838 1.49376 1.22115 1.19941 0.88577 0.78665 0.79876 1.90703 1.29652 1.63773 1.61232 1.23260 0.99571 1.02267 1.01349 1.85740 1.20915 1.62778 1.23811 1.23174 0.97819 1.35878 1.12141 0.89624 1.26186 1.01491 0.96599 0.95049 1.70203 1.31059 1.39457 1.14241 0.84911 0.76994 0.78428 0.77373 1.19172 1.20490 1.17914 1.22663 0.91433 0.95508 0.93001 0.91646 0.93658 0.88759 0.93526 0.90575 0.89821 0.88230 0.92229 0.74423 0.90032 0.92961 0.89487 0.86577 0.85200 0.89380 0.89438 0.87245 0.87171 0.92020 0.94024 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 10.28 71.98 0.74 -1.80 16 2 C 0.05 0.87 6.47 71.98 0.47 1.34 16 3 O -0.39 -9.69 9.53 -129.99 -1.24 -10.93 16 4 C 0.06 1.20 3.13 29.85 0.09 1.29 16 5 H 0.10 1.51 7.79 -2.39 -0.02 1.50 16 6 C -0.16 -1.62 9.48 71.98 0.68 -0.94 16 7 C 0.51 12.04 6.55 87.66 0.57 12.61 16 8 O -0.56 -18.99 13.33 15.95 0.21 -18.78 16 9 N -0.70 -11.07 5.14 -416.63 -2.14 -13.21 16 10 C 0.17 2.78 0.83 5.00 0.00 2.78 16 11 C -0.15 -2.34 8.59 71.98 0.62 -1.72 16 12 C -0.11 -0.91 5.96 31.78 0.19 -0.72 16 13 C 0.08 1.31 6.51 86.64 0.56 1.87 16 14 N -0.61 -17.43 3.34 -810.60 -2.71 -20.14 16 15 C 0.54 21.91 7.87 87.65 0.69 22.60 16 16 O -0.57 -29.84 16.12 -3.02 -0.05 -29.89 16 17 C -0.11 -4.61 5.35 71.23 0.38 -4.23 16 18 S -0.16 -9.08 20.57 -56.49 -1.16 -10.24 16 19 C -0.54 -30.89 9.50 67.95 0.65 -30.24 16 20 H 0.09 4.46 7.80 -2.91 -0.02 4.44 16 21 C 0.01 0.64 5.49 84.86 0.47 1.11 16 22 N -0.91 -56.58 13.22 21.65 0.29 -56.30 16 23 Si 1.00 43.18 29.55 68.60 2.03 45.21 16 24 H -0.27 -10.97 7.11 99.48 0.71 -10.26 16 25 H -0.28 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 27 C 0.10 2.70 5.84 86.86 0.51 3.21 16 28 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 0.86 8.08 -2.39 -0.02 0.85 16 32 H 0.08 0.93 7.87 -2.39 -0.02 0.91 16 33 H 0.08 0.65 7.87 -2.39 -0.02 0.63 16 34 H 0.10 0.43 7.92 -2.39 -0.02 0.41 16 35 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 36 H 0.42 3.47 8.30 -92.71 -0.77 2.70 16 37 H 0.08 1.05 8.07 -2.39 -0.02 1.03 16 38 H 0.05 1.23 5.92 -2.39 -0.01 1.21 16 39 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.12 0.61 8.04 -2.39 -0.02 0.59 16 41 H 0.13 0.15 8.09 -2.39 -0.02 0.13 16 42 H 0.09 1.21 8.14 -2.39 -0.02 1.20 16 43 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 44 H 0.11 3.97 8.14 -2.40 -0.02 3.95 16 45 H 0.11 3.94 8.14 -2.39 -0.02 3.92 16 46 H 0.27 15.56 8.31 -92.70 -0.77 14.79 16 47 H 0.04 1.56 6.76 -2.39 -0.02 1.55 16 48 H 0.08 2.04 7.98 -2.39 -0.02 2.02 16 Total: -1.00 -92.44 406.05 2.03 -90.41 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: 0.18 Total: 16.73 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: 6.62 Total: 7.14 kcal Atomic # 7 Polarization: -85.09 SS G_CDS: -4.56 Total: -89.65 kcal Atomic # 8 Polarization: -58.52 SS G_CDS: -1.07 Total: -59.59 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.16 Total: -10.24 kcal Total: -92.44 2.03 -90.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001585796781.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.273 kcal (2) G-P(sol) polarization free energy of solvation -92.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds