Wall clock time and date at job start Sat Apr 11 2020 07:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34101 * 125.15624 * 2 1 4 4 C 1.38035 * 107.88744 * 180.02562 * 3 2 1 5 5 C 1.47230 * 126.81655 * 179.97438 * 4 3 2 6 6 O 1.21627 * 119.99966 * 180.02562 * 5 4 3 7 7 N 1.34780 * 120.00281 * 0.02562 * 5 4 3 8 8 C 1.47024 * 125.64634 * 359.95770 * 7 5 4 9 9 C 1.54327 * 107.27131 * 181.09623 * 8 7 5 10 10 C 1.55159 * 102.94078 * 22.19431 * 9 8 7 11 11 H 1.08993 * 111.03527 * 82.58520 * 10 9 8 12 12 C 1.53001 * 111.00458 * 206.42528 * 10 9 8 13 13 N 1.46490 * 109.47264 * 178.64848 * 12 10 9 14 14 C 1.36935 * 120.00121 * 179.97438 * 13 12 10 15 15 H 1.07997 * 120.00139 * 0.02562 * 14 13 12 16 16 C 1.38816 * 120.00401 * 180.02562 * 14 13 12 17 17 N 1.31624 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00172 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47055 * 180.02562 * 18 16 14 20 20 H 1.48505 * 109.46653 * 299.99639 * 18 16 14 21 21 H 1.48495 * 109.47483 * 60.00002 * 18 16 14 22 22 C 1.47421 * 125.65064 * 180.02562 * 7 5 4 23 23 C 1.46589 * 106.36475 * 0.25939 * 4 3 2 24 24 C 1.48326 * 126.51364 * 179.74340 * 23 4 3 25 25 C 1.46732 * 127.11907 * 144.70883 * 24 23 4 26 26 C 1.34364 * 106.02496 * 179.88942 * 25 24 23 27 27 O 1.34157 * 108.99657 * 0.37280 * 26 25 24 28 28 C 1.34080 * 110.75914 * 359.74819 * 27 26 25 29 29 N 1.31362 * 106.97187 * 359.55628 * 23 4 3 30 30 H 1.09006 * 109.47144 * 90.00734 * 1 2 3 31 31 H 1.09002 * 109.47257 * 209.99764 * 1 2 3 32 32 H 1.08999 * 109.47490 * 330.00184 * 1 2 3 33 33 H 1.08005 * 126.05974 * 0.03300 * 3 2 1 34 34 H 1.08994 * 109.88344 * 300.51347 * 8 7 5 35 35 H 1.09003 * 109.88015 * 61.52758 * 8 7 5 36 36 H 1.08997 * 110.71778 * 263.83268 * 9 8 7 37 37 H 1.08997 * 110.72113 * 140.55626 * 9 8 7 38 38 H 1.09003 * 109.46836 * 58.64556 * 12 10 9 39 39 H 1.08999 * 109.47071 * 298.65595 * 12 10 9 40 40 H 0.97000 * 120.00577 * 0.02562 * 13 12 10 41 41 H 0.97001 * 119.99885 * 359.97438 * 17 16 14 42 42 H 1.09007 * 110.36720 * 36.99771 * 22 7 5 43 43 H 1.08996 * 110.46086 * 274.72597 * 22 7 5 44 44 H 1.08005 * 126.98797 * 0.03351 * 25 24 23 45 45 H 1.07998 * 125.50172 * 180.12540 * 26 25 24 46 46 H 1.08001 * 125.77511 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2371 1.0964 0.0000 4 6 3.5552 0.6866 -0.0006 5 6 4.7476 1.5502 -0.0013 6 8 5.8580 1.0539 -0.0023 7 7 4.6088 2.8909 -0.0010 8 6 3.3322 3.6201 -0.0007 9 6 3.6651 5.1268 -0.0285 10 6 5.1017 5.1544 -0.6140 11 1 5.0819 5.0974 -1.7022 12 6 5.8605 6.3981 -0.1466 13 7 7.2201 6.3741 -0.6915 14 6 8.0901 7.3924 -0.4064 15 1 7.7741 8.2130 0.2205 16 6 9.3783 7.3699 -0.9231 17 7 9.7633 6.3700 -1.6876 18 14 10.5653 8.7587 -0.5336 19 1 11.8662 8.4999 -1.2012 20 1 10.0037 10.0424 -1.0256 21 1 10.7693 8.8383 0.9352 22 6 5.7119 3.8689 -0.0022 23 6 3.5321 -0.7791 -0.0073 24 6 4.7101 -1.6803 -0.0156 25 6 4.8355 -2.9800 0.6538 26 6 6.0691 -3.4280 0.3660 27 8 6.6947 -2.5224 -0.4010 28 6 5.8983 -1.4706 -0.6399 29 7 2.2698 -1.1427 -0.0005 30 1 -0.3634 -0.0001 -1.0277 31 1 -0.3634 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5138 33 1 1.8893 2.1189 0.0005 34 1 2.7521 3.3523 -0.8838 35 1 2.7679 3.3794 0.9003 36 1 3.6510 5.5434 0.9786 37 1 2.9734 5.6626 -0.6785 38 1 5.9056 6.4082 0.9425 39 1 5.3443 7.2918 -0.4971 40 1 7.5040 5.6372 -1.2549 41 1 9.1471 5.6487 -1.8895 42 1 6.5365 3.5100 -0.6182 43 1 6.0540 4.0586 1.0152 44 1 4.0873 -3.4767 1.2539 45 1 6.4906 -4.3640 0.7016 46 1 6.1574 -0.6034 -1.2293 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001714357188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:09 Heat of formation + Delta-G solvation = 86.245854 kcal Electronic energy + Delta-G solvation = -29568.402388 eV Core-core repulsion = 25462.492555 eV Total energy + Delta-G solvation = -4105.909833 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.35597 -41.35854 -39.67244 -37.52785 -34.96513 -34.26833 -32.70327 -32.14266 -30.79178 -30.33116 -29.72210 -28.52136 -27.12509 -25.33442 -23.94673 -22.86305 -22.48729 -21.83474 -20.97486 -20.43666 -20.01616 -19.25215 -17.69172 -17.34970 -16.95333 -16.32497 -16.28871 -15.98106 -15.78080 -15.47561 -14.78375 -14.63499 -14.35847 -14.07213 -13.84341 -13.63703 -13.42260 -13.24122 -13.17600 -13.03059 -12.85426 -12.67297 -12.54064 -12.29660 -12.06212 -11.83939 -11.24191 -11.05833 -10.83444 -10.68893 -10.57678 -10.42782 -10.39581 -9.95599 -9.85059 -9.39512 -9.15034 -8.94911 -8.87392 -8.59573 -8.32571 -6.99685 -6.07729 -3.08279 1.25516 1.40198 1.98836 2.01047 2.78830 3.00602 3.10259 3.42549 3.53467 3.57404 3.75068 4.00422 4.15379 4.44012 4.50042 4.53824 4.67467 4.70516 4.75048 4.81692 4.93541 4.97958 5.03582 5.11642 5.19774 5.28126 5.30972 5.44115 5.49281 5.63744 5.76747 5.81779 5.85553 5.89924 5.93076 6.11136 6.16572 6.21362 6.24981 6.34400 6.40982 6.50019 6.59568 6.72767 7.11375 7.31184 7.57471 7.81706 8.27776 8.78237 9.24524 10.10867 10.25027 11.40681 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.012450 B = 0.002611 C = 0.002189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2248.464815 B =10723.074513 C =12786.462593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.367 5.367 3 C 0.091 3.909 4 C -0.280 4.280 5 C 0.607 3.393 6 O -0.539 6.539 7 N -0.614 5.614 8 C 0.094 3.906 9 C -0.125 4.125 10 C -0.108 4.108 11 H 0.084 0.916 12 C 0.171 3.829 13 N -0.744 5.744 14 C -0.335 4.335 15 H 0.064 0.936 16 C -0.044 4.044 17 N -0.942 5.942 18 Si 1.080 2.920 19 H -0.285 1.285 20 H -0.296 1.296 21 H -0.295 1.295 22 C 0.119 3.881 23 C 0.210 3.790 24 C -0.146 4.146 25 C -0.188 4.188 26 C -0.049 4.049 27 O -0.179 6.179 28 C 0.056 3.944 29 N -0.288 5.288 30 H 0.079 0.921 31 H 0.092 0.908 32 H 0.091 0.909 33 H 0.195 0.805 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.023 0.977 39 H 0.024 0.976 40 H 0.368 0.632 41 H 0.256 0.744 42 H 0.082 0.918 43 H 0.072 0.928 44 H 0.150 0.850 45 H 0.203 0.797 46 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.629 -15.119 4.033 27.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.146 5.146 3 C -0.058 4.058 4 C -0.295 4.295 5 C 0.397 3.603 6 O -0.417 6.417 7 N -0.348 5.348 8 C -0.029 4.029 9 C -0.163 4.163 10 C -0.127 4.127 11 H 0.102 0.898 12 C 0.043 3.957 13 N -0.390 5.390 14 C -0.465 4.465 15 H 0.082 0.918 16 C -0.242 4.242 17 N -0.587 5.587 18 Si 0.911 3.089 19 H -0.210 1.210 20 H -0.223 1.223 21 H -0.223 1.223 22 C -0.002 4.002 23 C 0.042 3.958 24 C -0.150 4.150 25 C -0.208 4.208 26 C -0.115 4.115 27 O -0.074 6.074 28 C -0.015 4.015 29 N -0.109 5.109 30 H 0.098 0.902 31 H 0.111 0.889 32 H 0.110 0.890 33 H 0.211 0.789 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.099 0.901 37 H 0.102 0.898 38 H 0.041 0.959 39 H 0.042 0.958 40 H 0.201 0.799 41 H 0.067 0.933 42 H 0.101 0.899 43 H 0.090 0.910 44 H 0.167 0.833 45 H 0.219 0.781 46 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -21.279 -15.723 3.839 26.735 hybrid contribution -1.581 0.074 0.349 1.621 sum -22.860 -15.649 4.188 28.018 Atomic orbital electron populations 1.21988 0.73580 1.04955 1.03895 1.48155 1.07143 1.03461 1.55869 1.23709 0.90733 0.93908 0.97455 1.21223 0.92468 0.92798 1.22993 1.16740 0.87622 0.79834 0.76068 1.90738 1.26334 1.73134 1.51513 1.48345 1.08289 1.04700 1.73475 1.22316 0.86958 0.93050 1.00614 1.22664 0.97362 0.93739 1.02577 1.22610 0.94033 0.95411 1.00653 0.89795 1.20514 0.86102 0.92932 0.96163 1.42364 1.09004 1.26796 1.60820 1.19999 0.95362 1.01530 1.29652 0.91783 1.25787 0.96543 1.03474 0.98421 1.70880 1.37872 1.10976 1.38976 0.83243 0.76159 0.74058 0.75440 1.21012 1.22304 1.22260 1.22286 0.89471 0.86690 1.01795 1.20792 0.90107 0.89649 0.95264 1.18833 0.92886 0.95832 1.07426 1.22711 0.98093 0.95303 1.04678 1.23818 0.93195 0.95710 0.98762 1.83954 1.41927 1.25944 1.55594 1.24631 0.87803 0.89582 0.99481 1.77380 1.01258 1.06430 1.25783 0.90231 0.88893 0.89035 0.78897 0.91402 0.91433 0.90092 0.89841 0.95945 0.95778 0.79916 0.93321 0.89937 0.90962 0.83273 0.78072 0.76573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.42 11.39 59.84 0.68 1.10 16 2 N -0.37 -3.51 3.95 -67.64 -0.27 -3.77 16 3 C 0.09 0.87 9.93 -16.64 -0.17 0.70 16 4 C -0.28 -3.76 6.28 -102.95 -0.65 -4.41 16 5 C 0.61 9.45 7.84 -12.61 -0.10 9.35 16 6 O -0.54 -10.00 13.27 5.25 0.07 -9.93 16 7 N -0.61 -8.50 3.33 -171.87 -0.57 -9.07 16 8 C 0.09 0.88 5.00 -3.06 -0.02 0.87 16 9 C -0.13 -1.27 6.42 -24.89 -0.16 -1.43 16 10 C -0.11 -1.59 3.10 -88.48 -0.27 -1.87 16 11 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 12 C 0.17 3.27 5.71 -4.05 -0.02 3.25 16 13 N -0.74 -18.58 5.45 -59.91 -0.33 -18.90 16 14 C -0.33 -9.48 9.99 -15.06 -0.15 -9.63 16 15 H 0.06 1.78 7.83 -52.49 -0.41 1.36 16 16 C -0.04 -1.30 5.50 -17.43 -0.10 -1.40 16 17 N -0.94 -29.54 13.70 55.49 0.76 -28.77 16 18 Si 1.08 26.14 29.92 -169.99 -5.09 21.05 16 19 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 20 H -0.30 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.30 -6.83 7.11 56.52 0.40 -6.43 16 22 C 0.12 1.93 6.08 -2.54 -0.02 1.92 16 23 C 0.21 3.02 7.34 -80.55 -0.59 2.43 16 24 C -0.15 -2.12 6.07 -103.17 -0.63 -2.75 16 25 C -0.19 -2.28 11.15 -37.52 -0.42 -2.70 16 26 C -0.05 -0.53 12.04 29.36 0.35 -0.17 16 27 O -0.18 -2.42 10.55 6.70 0.07 -2.35 16 28 C 0.06 0.81 10.28 29.87 0.31 1.12 16 29 N -0.29 -3.77 12.50 34.58 0.43 -3.34 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.09 0.14 8.13 -51.93 -0.42 -0.28 16 33 H 0.19 1.14 4.46 -52.48 -0.23 0.91 16 34 H 0.07 0.51 6.86 -51.93 -0.36 0.15 16 35 H 0.07 0.50 7.01 -51.93 -0.36 0.13 16 36 H 0.08 0.80 8.04 -51.93 -0.42 0.38 16 37 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.02 0.44 8.10 -51.93 -0.42 0.02 16 39 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 40 H 0.37 9.46 6.37 -40.82 -0.26 9.20 16 41 H 0.26 7.90 6.77 -40.82 -0.28 7.63 16 42 H 0.08 1.54 8.04 -51.93 -0.42 1.13 16 43 H 0.07 1.26 8.00 -51.93 -0.42 0.84 16 44 H 0.15 1.54 8.06 -52.48 -0.42 1.12 16 45 H 0.20 1.30 8.06 -52.49 -0.42 0.88 16 46 H 0.22 3.19 6.33 -52.49 -0.33 2.85 16 LS Contribution 380.88 15.07 5.74 5.74 Total: -1.00 -37.94 380.88 -7.20 -45.14 By element: Atomic # 1 Polarization: 13.92 SS G_CDS: -6.08 Total: 7.84 kcal Atomic # 6 Polarization: -1.69 SS G_CDS: -1.94 Total: -3.63 kcal Atomic # 7 Polarization: -63.89 SS G_CDS: 0.03 Total: -63.86 kcal Atomic # 8 Polarization: -12.42 SS G_CDS: 0.14 Total: -12.28 kcal Atomic # 14 Polarization: 26.14 SS G_CDS: -5.09 Total: 21.05 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.94 -7.20 -45.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001714357188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.384 kcal (2) G-P(sol) polarization free energy of solvation -37.938 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds