Wall clock time and date at job start Sat Apr 11 2020 07:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81396 * 109.46886 * 2 1 4 4 O 1.42104 * 108.58184 * 65.51319 * 3 2 1 5 5 O 1.42098 * 108.58135 * 294.48497 * 3 2 1 6 6 C 1.81402 * 101.92205 * 179.97438 * 3 2 1 7 7 C 1.50703 * 109.47263 * 179.97438 * 6 3 2 8 8 O 1.21276 * 120.00112 * 0.02562 * 7 6 3 9 9 N 1.34775 * 119.99641 * 180.02562 * 7 6 3 10 10 C 1.46503 * 119.99561 * 180.02562 * 9 7 6 11 11 H 1.08998 * 108.97150 * 33.92214 * 10 9 7 12 12 C 1.52523 * 109.04411 * 274.99696 * 10 9 7 13 13 C 1.53817 * 111.70962 * 293.48861 * 12 10 9 14 14 C 1.51619 * 107.02697 * 302.46129 * 13 12 10 15 15 H 1.09004 * 110.50797 * 304.78701 * 14 13 12 16 16 C 1.53062 * 116.67003 * 176.23189 * 14 13 12 17 17 N 1.48658 * 103.44745 * 204.12697 * 16 14 13 18 18 C 1.36928 * 125.78847 * 204.37608 * 17 16 14 19 19 H 1.08005 * 120.00649 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99705 * 0.02562 * 18 17 16 21 21 N 1.31617 * 120.00267 * 0.02562 * 20 18 17 22 22 Si 1.86811 * 119.99873 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46808 * 89.99938 * 22 20 18 24 24 H 1.48502 * 109.46752 * 210.00113 * 22 20 18 25 25 H 1.48500 * 109.47078 * 329.99635 * 22 20 18 26 26 C 1.48246 * 108.42921 * 24.37728 * 17 16 14 27 27 C 1.52319 * 105.86673 * 3.18849 * 26 17 16 28 28 H 1.08995 * 109.88508 * 88.13420 * 27 26 17 29 29 C 1.51444 * 117.46275 * 214.66553 * 27 26 17 30 30 H 1.08998 * 109.47135 * 299.99770 * 1 2 3 31 31 H 1.08997 * 109.46702 * 60.00440 * 1 2 3 32 32 H 1.09004 * 109.46826 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47135 * 240.00230 * 2 1 3 34 34 H 1.08998 * 109.47042 * 119.99984 * 2 1 3 35 35 H 1.09003 * 109.47065 * 59.99816 * 6 3 2 36 36 H 1.08997 * 109.47292 * 299.99919 * 6 3 2 37 37 H 0.96994 * 120.00444 * 359.97438 * 9 7 6 38 38 H 1.09001 * 109.03741 * 172.91224 * 12 10 9 39 39 H 1.08997 * 109.03614 * 54.05974 * 12 10 9 40 40 H 1.09002 * 109.94242 * 61.84036 * 13 12 10 41 41 H 1.08998 * 109.94516 * 183.08225 * 13 12 10 42 42 H 1.08998 * 110.62330 * 85.63937 * 16 14 13 43 43 H 1.08994 * 110.76389 * 322.68124 * 16 14 13 44 44 H 0.97000 * 120.00414 * 180.02562 * 21 20 18 45 45 H 1.09000 * 110.17188 * 244.08550 * 26 17 16 46 46 H 1.09000 * 110.16856 * 122.28697 * 26 17 16 47 47 H 1.08999 * 109.94068 * 59.40456 * 29 27 26 48 48 H 1.09001 * 110.00815 * 298.21316 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.7592 2.3233 1.2258 5 8 1.7592 2.3232 -1.2258 6 6 3.9329 1.4720 0.0008 7 6 4.6176 2.8145 0.0002 8 8 3.9574 3.8319 -0.0001 9 7 5.9635 2.8845 0.0002 10 6 6.6290 4.1897 0.0002 11 1 6.0281 4.8939 0.5755 12 6 6.7432 4.6902 -1.4360 13 6 7.6899 3.8115 -2.2712 14 6 9.0340 3.8156 -1.5697 15 1 9.3862 4.8370 -1.4252 16 6 10.1263 2.9289 -2.1725 17 7 11.0325 2.6673 -1.0234 18 6 12.3593 2.3395 -1.1084 19 1 12.9322 2.1692 -0.2088 20 6 12.9682 2.2272 -2.3508 21 7 12.2705 2.4363 -3.4470 22 14 14.7785 1.7807 -2.4667 23 1 14.9203 0.3044 -2.5402 24 1 15.3627 2.3955 -3.6857 25 1 15.4911 2.2875 -1.2665 26 6 10.2563 2.8215 0.2302 27 6 8.8234 3.1078 -0.1998 28 1 8.2833 2.1710 -0.3371 29 6 8.0099 4.0490 0.6637 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.2260 0.9147 -0.8890 36 1 4.2253 0.9151 0.8910 37 1 6.4915 2.0709 0.0008 38 1 7.1219 5.7122 -1.4274 39 1 5.7544 4.6829 -1.8947 40 1 7.3019 2.7942 -2.3255 41 1 7.7929 4.2251 -3.2744 42 1 10.6551 3.4570 -2.9660 43 1 9.7040 1.9970 -2.5482 44 1 12.6958 2.3574 -4.3152 45 1 10.6471 3.6547 0.8142 46 1 10.2971 1.9013 0.8130 47 1 8.4984 5.0220 0.7154 48 1 7.9002 3.6348 1.6660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717627118.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:46 Heat of formation + Delta-G solvation = -82.917380 kcal Electronic energy + Delta-G solvation = -28992.328476 eV Core-core repulsion = 24982.234375 eV Total energy + Delta-G solvation = -4010.094101 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.99 seconds Orbital eigenvalues (eV) -40.56407 -38.91604 -37.22991 -36.26369 -35.77921 -33.65389 -33.41542 -32.02874 -31.32285 -30.13605 -28.74406 -26.29865 -25.12742 -24.54274 -22.04801 -21.71871 -20.70667 -19.84055 -19.14258 -19.03389 -17.82412 -17.19710 -16.79264 -16.74496 -16.27304 -15.69394 -15.50493 -14.90629 -14.78888 -14.45335 -14.40680 -13.93782 -13.71137 -13.57792 -13.36240 -13.02277 -12.96893 -12.76146 -12.45353 -12.28409 -12.22861 -12.13373 -12.02721 -11.99116 -11.54649 -11.40975 -11.24041 -11.06573 -10.89637 -10.84220 -10.78845 -10.69510 -10.35038 -10.08763 -9.99277 -9.87966 -9.60837 -9.34420 -9.05896 -8.68804 -6.86706 -5.67584 -3.08714 -0.48381 2.22640 2.38375 2.74461 3.37410 3.42568 3.44587 3.47344 3.62813 4.14116 4.15724 4.21427 4.44986 4.54276 4.70913 4.72131 4.78164 4.83686 4.98649 5.12501 5.16859 5.27573 5.28722 5.47414 5.48329 5.58337 5.61268 5.67154 5.77676 5.94036 6.07736 6.11209 6.18591 6.20099 6.31536 6.39878 6.53623 6.57539 6.60934 6.79090 6.96599 7.18165 7.49675 7.58522 7.83158 7.84371 8.30703 9.17616 9.78910 10.45262 11.36774 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022990 B = 0.002258 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.622774 B =12400.083877 C =12752.636659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.622 4.622 3 S 2.451 3.549 4 O -0.921 6.921 5 O -0.919 6.919 6 C -0.664 4.664 7 C 0.541 3.459 8 O -0.533 6.533 9 N -0.707 5.707 10 C 0.147 3.853 11 H 0.089 0.911 12 C -0.130 4.130 13 C -0.100 4.100 14 C -0.114 4.114 15 H 0.071 0.929 16 C 0.164 3.836 17 N -0.608 5.608 18 C -0.221 4.221 19 H 0.076 0.924 20 C -0.013 4.013 21 N -0.922 5.922 22 Si 0.913 3.087 23 H -0.290 1.290 24 H -0.290 1.290 25 H -0.282 1.282 26 C 0.143 3.857 27 C -0.108 4.108 28 H 0.063 0.937 29 C -0.110 4.110 30 H 0.074 0.926 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.133 0.867 35 H 0.161 0.839 36 H 0.159 0.841 37 H 0.405 0.595 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.057 0.943 41 H 0.064 0.936 42 H 0.104 0.896 43 H 0.012 0.988 44 H 0.251 0.749 45 H 0.023 0.977 46 H 0.023 0.977 47 H 0.083 0.917 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.365 -4.969 7.314 22.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.751 4.751 3 S 2.628 3.372 4 O -0.918 6.918 5 O -0.916 6.916 6 C -0.791 4.791 7 C 0.324 3.676 8 O -0.411 6.411 9 N -0.359 5.359 10 C 0.043 3.957 11 H 0.107 0.893 12 C -0.168 4.168 13 C -0.139 4.139 14 C -0.133 4.133 15 H 0.089 0.911 16 C 0.039 3.961 17 N -0.335 5.335 18 C -0.349 4.349 19 H 0.094 0.906 20 C -0.208 4.208 21 N -0.571 5.571 22 Si 0.744 3.256 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 C 0.018 3.982 27 C -0.127 4.127 28 H 0.081 0.919 29 C -0.148 4.148 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.179 0.821 36 H 0.177 0.823 37 H 0.241 0.759 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.122 0.878 43 H 0.030 0.970 44 H 0.062 0.938 45 H 0.041 0.959 46 H 0.041 0.959 47 H 0.101 0.899 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -21.080 -3.485 7.166 22.536 hybrid contribution 1.877 -1.794 -0.076 2.597 sum -19.204 -5.279 7.090 21.140 Atomic orbital electron populations 1.21520 0.90096 1.04964 1.03986 1.30343 1.07855 1.25165 1.11687 1.07498 0.76419 0.77457 0.75848 1.93583 1.79832 1.72540 1.45821 1.93591 1.79764 1.72482 1.45737 1.30909 1.28735 1.05932 1.13548 1.19067 0.83530 0.88241 0.76713 1.90856 1.64285 1.35853 1.50097 1.46127 1.05403 1.10737 1.73596 1.21209 0.93451 0.83844 0.97170 0.89330 1.21953 1.00274 1.00090 0.94497 1.21279 0.94644 0.99325 0.98607 1.22407 0.95480 1.00155 0.95307 0.91052 1.21618 0.87875 0.95047 0.91516 1.45126 1.06463 1.82193 0.99685 1.19079 0.83937 1.39232 0.92683 0.90584 1.24777 0.98317 1.02378 0.95320 1.69809 1.34343 1.56090 0.96875 0.86092 0.84495 0.77946 0.77078 1.21712 1.21661 1.20739 1.20969 0.89392 0.97438 0.90418 1.21791 0.96167 0.97514 0.97254 0.91914 1.21620 0.93566 1.01253 0.98393 0.90684 0.90636 0.89922 0.84800 0.84873 0.82148 0.82260 0.75863 0.90952 0.91711 0.92407 0.91697 0.87827 0.97034 0.93778 0.95875 0.95925 0.89884 0.91476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.92 37.16 0.37 -0.39 16 2 C -0.62 -2.67 6.53 37.16 0.24 -2.43 16 3 S 2.45 22.23 3.96 -107.50 -0.43 21.80 16 4 O -0.92 -11.87 17.95 -59.52 -1.07 -12.94 16 5 O -0.92 -12.13 17.95 -59.53 -1.07 -13.20 16 6 C -0.66 -4.59 6.29 36.01 0.23 -4.37 16 7 C 0.54 6.52 7.79 -10.98 -0.09 6.44 16 8 O -0.53 -8.62 15.25 2.56 0.04 -8.58 16 9 N -0.71 -7.83 4.66 -53.62 -0.25 -8.08 16 10 C 0.15 1.81 2.71 -67.74 -0.18 1.63 16 11 H 0.09 1.14 7.51 -51.93 -0.39 0.75 16 12 C -0.13 -1.71 5.42 -26.55 -0.14 -1.85 16 13 C -0.10 -1.48 5.57 -27.01 -0.15 -1.63 16 14 C -0.11 -1.99 2.50 -89.89 -0.22 -2.22 16 15 H 0.07 1.30 8.01 -51.93 -0.42 0.88 16 16 C 0.16 3.79 5.53 -2.82 -0.02 3.77 16 17 N -0.61 -15.08 3.45 -170.42 -0.59 -15.67 16 18 C -0.22 -6.05 10.30 -15.06 -0.16 -6.20 16 19 H 0.08 2.02 7.83 -52.48 -0.41 1.61 16 20 C -0.01 -0.35 5.49 -17.43 -0.10 -0.44 16 21 N -0.92 -26.49 10.11 55.49 0.56 -25.93 16 22 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 23 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 C 0.14 2.81 6.98 -3.43 -0.02 2.78 16 27 C -0.11 -1.67 2.23 -90.36 -0.20 -1.87 16 28 H 0.06 0.91 6.12 -51.93 -0.32 0.59 16 29 C -0.11 -1.36 5.37 -27.08 -0.15 -1.51 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.13 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.13 0.24 8.14 -51.93 -0.42 -0.18 16 35 H 0.16 0.59 8.14 -51.92 -0.42 0.16 16 36 H 0.16 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.40 3.75 6.81 -40.82 -0.28 3.47 16 38 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 39 H 0.06 0.90 8.13 -51.93 -0.42 0.47 16 40 H 0.06 0.83 7.85 -51.93 -0.41 0.42 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.54 16 42 H 0.10 2.76 5.93 -51.93 -0.31 2.45 16 43 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 44 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 45 H 0.02 0.45 8.08 -51.93 -0.42 0.04 16 46 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 47 H 0.08 1.03 8.03 -51.93 -0.42 0.61 16 48 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 LS Contribution 387.14 15.07 5.83 5.83 Total: -1.00 -38.04 387.14 -10.57 -48.61 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -8.00 Total: -0.34 kcal Atomic # 6 Polarization: -7.69 SS G_CDS: -0.59 Total: -8.28 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.28 Total: -49.68 kcal Atomic # 8 Polarization: -32.62 SS G_CDS: -2.10 Total: -34.72 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 22.23 SS G_CDS: -0.43 Total: 21.80 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -38.04 -10.57 -48.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717627118.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.304 kcal (2) G-P(sol) polarization free energy of solvation -38.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.99 seconds