Wall clock time and date at job start Sat Apr 11 2020 07:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81396 * 109.46886 * 2 1 4 4 O 1.42104 * 108.58184 * 65.51319 * 3 2 1 5 5 O 1.42098 * 108.58135 * 294.48497 * 3 2 1 6 6 C 1.81402 * 101.92205 * 179.97438 * 3 2 1 7 7 C 1.50703 * 109.47263 * 179.97438 * 6 3 2 8 8 O 1.21276 * 120.00112 * 0.02562 * 7 6 3 9 9 N 1.34775 * 119.99641 * 180.02562 * 7 6 3 10 10 C 1.46503 * 119.99561 * 180.02562 * 9 7 6 11 11 H 1.08998 * 108.97150 * 33.92214 * 10 9 7 12 12 C 1.52523 * 109.04411 * 274.99696 * 10 9 7 13 13 C 1.53817 * 111.70962 * 293.48861 * 12 10 9 14 14 C 1.51619 * 107.02697 * 302.46129 * 13 12 10 15 15 H 1.09004 * 110.50797 * 304.78701 * 14 13 12 16 16 C 1.53062 * 116.67003 * 176.23189 * 14 13 12 17 17 N 1.48658 * 103.44745 * 204.12697 * 16 14 13 18 18 C 1.36928 * 125.78847 * 204.37608 * 17 16 14 19 19 H 1.08005 * 120.00649 * 179.97438 * 18 17 16 20 20 C 1.38814 * 119.99705 * 0.02562 * 18 17 16 21 21 N 1.31617 * 120.00267 * 0.02562 * 20 18 17 22 22 Si 1.86811 * 119.99873 * 179.97438 * 20 18 17 23 23 H 1.48497 * 109.46808 * 89.99938 * 22 20 18 24 24 H 1.48502 * 109.46752 * 210.00113 * 22 20 18 25 25 H 1.48500 * 109.47078 * 329.99635 * 22 20 18 26 26 C 1.48246 * 108.42921 * 24.37728 * 17 16 14 27 27 C 1.52319 * 105.86673 * 3.18849 * 26 17 16 28 28 H 1.08995 * 109.88508 * 88.13420 * 27 26 17 29 29 C 1.51444 * 117.46275 * 214.66553 * 27 26 17 30 30 H 1.08998 * 109.47135 * 299.99770 * 1 2 3 31 31 H 1.08997 * 109.46702 * 60.00440 * 1 2 3 32 32 H 1.09004 * 109.46826 * 180.02562 * 1 2 3 33 33 H 1.08998 * 109.47135 * 240.00230 * 2 1 3 34 34 H 1.08998 * 109.47042 * 119.99984 * 2 1 3 35 35 H 1.09003 * 109.47065 * 59.99816 * 6 3 2 36 36 H 1.08997 * 109.47292 * 299.99919 * 6 3 2 37 37 H 0.96994 * 120.00444 * 359.97438 * 9 7 6 38 38 H 1.09001 * 109.03741 * 172.91224 * 12 10 9 39 39 H 1.08997 * 109.03614 * 54.05974 * 12 10 9 40 40 H 1.09002 * 109.94242 * 61.84036 * 13 12 10 41 41 H 1.08998 * 109.94516 * 183.08225 * 13 12 10 42 42 H 1.08998 * 110.62330 * 85.63937 * 16 14 13 43 43 H 1.08994 * 110.76389 * 322.68124 * 16 14 13 44 44 H 0.97000 * 120.00414 * 180.02562 * 21 20 18 45 45 H 1.09000 * 110.17188 * 244.08550 * 26 17 16 46 46 H 1.09000 * 110.16856 * 122.28697 * 26 17 16 47 47 H 1.08999 * 109.94068 * 59.40456 * 29 27 26 48 48 H 1.09001 * 110.00815 * 298.21316 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.7592 2.3233 1.2258 5 8 1.7592 2.3232 -1.2258 6 6 3.9329 1.4720 0.0008 7 6 4.6176 2.8145 0.0002 8 8 3.9574 3.8319 -0.0001 9 7 5.9635 2.8845 0.0002 10 6 6.6290 4.1897 0.0002 11 1 6.0281 4.8939 0.5755 12 6 6.7432 4.6902 -1.4360 13 6 7.6899 3.8115 -2.2712 14 6 9.0340 3.8156 -1.5697 15 1 9.3862 4.8370 -1.4252 16 6 10.1263 2.9289 -2.1725 17 7 11.0325 2.6673 -1.0234 18 6 12.3593 2.3395 -1.1084 19 1 12.9322 2.1692 -0.2088 20 6 12.9682 2.2272 -2.3508 21 7 12.2705 2.4363 -3.4470 22 14 14.7785 1.7807 -2.4667 23 1 14.9203 0.3044 -2.5402 24 1 15.3627 2.3955 -3.6857 25 1 15.4911 2.2875 -1.2665 26 6 10.2563 2.8215 0.2302 27 6 8.8234 3.1078 -0.1998 28 1 8.2833 2.1710 -0.3371 29 6 8.0099 4.0490 0.6637 30 1 -0.3633 0.5138 0.8900 31 1 -0.3632 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.2260 0.9147 -0.8890 36 1 4.2253 0.9151 0.8910 37 1 6.4915 2.0709 0.0008 38 1 7.1219 5.7122 -1.4274 39 1 5.7544 4.6829 -1.8947 40 1 7.3019 2.7942 -2.3255 41 1 7.7929 4.2251 -3.2744 42 1 10.6551 3.4570 -2.9660 43 1 9.7040 1.9970 -2.5482 44 1 12.6958 2.3574 -4.3152 45 1 10.6471 3.6547 0.8142 46 1 10.2971 1.9013 0.8130 47 1 8.4984 5.0220 0.7154 48 1 7.9002 3.6348 1.6660 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717627118.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:43 Heat of formation + Delta-G solvation = -112.163409 kcal Electronic energy + Delta-G solvation = -28993.596679 eV Core-core repulsion = 24982.234375 eV Total energy + Delta-G solvation = -4011.362304 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 2.47 seconds Orbital eigenvalues (eV) -41.63902 -40.14403 -37.99514 -37.24021 -36.97609 -34.86238 -33.98123 -33.60194 -32.38290 -31.33756 -30.12706 -27.78394 -26.85240 -24.99485 -23.55799 -22.63677 -21.94503 -21.46835 -20.22361 -19.78725 -18.77305 -18.62693 -17.94902 -17.39141 -17.08137 -16.87539 -16.50735 -16.34646 -15.72033 -15.66040 -15.41950 -15.15099 -14.90343 -14.72812 -14.24029 -14.01525 -13.95715 -13.71609 -13.44025 -13.38773 -13.37601 -13.08535 -13.04559 -13.01011 -12.83112 -12.63986 -12.57194 -12.41112 -12.33956 -12.04615 -11.97426 -11.93277 -11.70665 -11.42152 -11.39458 -11.22781 -11.00541 -10.79611 -10.69476 -10.13415 -8.85926 -7.75331 -5.18446 -1.07604 1.37604 1.46762 1.48108 1.56783 1.82258 1.96807 2.50196 2.86260 3.08836 3.34496 3.48803 3.56208 3.63125 3.73135 3.77648 3.84266 3.88763 4.08058 4.11777 4.30057 4.35940 4.43375 4.44950 4.47911 4.59017 4.70327 4.75695 4.76719 4.84391 4.88185 4.93654 5.00513 5.06103 5.10480 5.15704 5.17314 5.26618 5.39198 5.46622 5.48365 5.57438 5.75635 5.86496 6.31091 6.32518 7.01363 7.11349 7.78991 8.45042 9.26704 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022990 B = 0.002258 C = 0.002195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1217.622774 B =12400.083877 C =12752.636659 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.586 4.586 3 S 2.427 3.573 4 O -0.977 6.977 5 O -0.979 6.979 6 C -0.651 4.651 7 C 0.528 3.472 8 O -0.583 6.583 9 N -0.700 5.700 10 C 0.150 3.850 11 H 0.086 0.914 12 C -0.123 4.123 13 C -0.092 4.092 14 C -0.104 4.104 15 H 0.063 0.937 16 C 0.168 3.832 17 N -0.633 5.633 18 C -0.234 4.234 19 H 0.080 0.920 20 C -0.070 4.070 21 N -0.949 5.949 22 Si 0.977 3.023 23 H -0.287 1.287 24 H -0.296 1.296 25 H -0.270 1.270 26 C 0.137 3.863 27 C -0.090 4.090 28 H 0.079 0.921 29 C -0.098 4.098 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.109 0.891 33 H 0.168 0.832 34 H 0.171 0.829 35 H 0.200 0.800 36 H 0.206 0.794 37 H 0.416 0.584 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.065 0.935 41 H 0.058 0.942 42 H 0.063 0.937 43 H -0.009 1.009 44 H 0.245 0.755 45 H 0.026 0.974 46 H 0.031 0.969 47 H 0.085 0.915 48 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.731 -7.412 8.940 23.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.719 4.719 3 S 2.612 3.388 4 O -0.974 6.974 5 O -0.977 6.977 6 C -0.780 4.780 7 C 0.314 3.686 8 O -0.464 6.464 9 N -0.352 5.352 10 C 0.045 3.955 11 H 0.104 0.896 12 C -0.161 4.161 13 C -0.130 4.130 14 C -0.123 4.123 15 H 0.082 0.918 16 C 0.044 3.956 17 N -0.359 5.359 18 C -0.363 4.363 19 H 0.097 0.903 20 C -0.263 4.263 21 N -0.600 5.600 22 Si 0.805 3.195 23 H -0.214 1.214 24 H -0.222 1.222 25 H -0.195 1.195 26 C 0.013 3.987 27 C -0.109 4.109 28 H 0.097 0.903 29 C -0.136 4.136 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.128 0.872 33 H 0.186 0.814 34 H 0.189 0.811 35 H 0.218 0.782 36 H 0.223 0.777 37 H 0.255 0.745 38 H 0.096 0.904 39 H 0.076 0.924 40 H 0.084 0.916 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.009 0.991 44 H 0.055 0.945 45 H 0.044 0.956 46 H 0.049 0.951 47 H 0.103 0.897 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.455 -5.895 8.827 23.937 hybrid contribution 2.004 -1.119 -0.566 2.364 sum -19.451 -7.014 8.260 22.266 Atomic orbital electron populations 1.21730 0.90885 1.06384 1.03423 1.30074 1.06962 1.19534 1.15312 1.07729 0.77425 0.79868 0.73801 1.93514 1.81140 1.75701 1.47053 1.93519 1.81165 1.75756 1.47217 1.30818 1.25671 1.03784 1.17736 1.19875 0.83574 0.89630 0.75524 1.90847 1.65260 1.38182 1.52094 1.46055 1.05395 1.10657 1.73091 1.21078 0.93400 0.84733 0.96252 0.89560 1.21877 0.99241 1.00117 0.94872 1.21203 0.93276 1.00181 0.98351 1.22161 0.94975 0.98617 0.96559 0.91838 1.21349 0.88936 0.94532 0.90791 1.45470 1.06376 1.82072 1.02015 1.19451 0.85545 1.38451 0.92841 0.90251 1.25597 1.02307 1.03158 0.95199 1.70077 1.35629 1.57296 0.96951 0.85096 0.79900 0.77500 0.76955 1.21377 1.22247 1.19531 1.21176 0.91126 0.97792 0.88616 1.21691 0.94454 0.98710 0.96070 0.90329 1.21545 0.92596 1.00630 0.98818 0.91363 0.91547 0.87234 0.81376 0.81096 0.78235 0.77662 0.74502 0.90446 0.92369 0.91636 0.92316 0.91904 0.99140 0.94532 0.95611 0.95116 0.89687 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 45. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.30 9.92 71.98 0.71 -0.58 16 2 C -0.59 -2.61 6.53 71.98 0.47 -2.15 16 3 S 2.43 41.18 3.96 -56.49 -0.22 40.95 16 4 O -0.98 -25.60 17.95 -125.75 -2.26 -27.86 16 5 O -0.98 -26.60 17.95 -125.75 -2.26 -28.86 16 6 C -0.65 -6.63 6.29 71.24 0.45 -6.19 16 7 C 0.53 11.66 7.79 87.66 0.68 12.34 16 8 O -0.58 -18.86 15.25 -0.15 0.00 -18.86 16 9 N -0.70 -13.45 4.66 -441.94 -2.06 -15.51 16 10 C 0.15 3.36 2.71 45.12 0.12 3.48 16 11 H 0.09 2.07 7.51 -2.39 -0.02 2.05 16 12 C -0.12 -3.07 5.42 30.71 0.17 -2.90 16 13 C -0.09 -2.62 5.57 30.42 0.17 -2.45 16 14 C -0.10 -3.57 2.50 -10.32 -0.03 -3.59 16 15 H 0.06 2.29 8.01 -2.38 -0.02 2.28 16 16 C 0.17 7.97 5.53 85.98 0.48 8.44 16 17 N -0.63 -31.49 3.45 -693.09 -2.39 -33.88 16 18 C -0.23 -12.87 10.30 84.04 0.87 -12.00 16 19 H 0.08 4.19 7.83 -2.91 -0.02 4.17 16 20 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 21 N -0.95 -56.17 10.11 21.65 0.22 -55.95 16 22 Si 0.98 45.22 29.55 68.60 2.03 47.25 16 23 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 24 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 26 C 0.14 5.16 6.98 85.82 0.60 5.76 16 27 C -0.09 -2.58 2.23 -10.62 -0.02 -2.61 16 28 H 0.08 2.02 6.12 -2.39 -0.01 2.01 16 29 C -0.10 -2.13 5.37 30.37 0.16 -1.96 16 30 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 33 H 0.17 -0.27 8.14 -2.39 -0.02 -0.29 16 34 H 0.17 -0.41 8.14 -2.39 -0.02 -0.43 16 35 H 0.20 0.43 8.14 -2.39 -0.02 0.41 16 36 H 0.21 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.42 6.00 6.81 -92.71 -0.63 5.37 16 38 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.06 1.57 8.13 -2.39 -0.02 1.55 16 40 H 0.06 1.76 7.85 -2.39 -0.02 1.74 16 41 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 42 H 0.06 3.50 5.93 -2.39 -0.01 3.49 16 43 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 44 H 0.24 14.14 8.31 -92.71 -0.77 13.37 16 45 H 0.03 0.96 8.08 -2.39 -0.02 0.94 16 46 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 47 H 0.08 1.88 8.03 -2.39 -0.02 1.86 16 48 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -89.96 387.14 -1.33 -91.29 By element: Atomic # 1 Polarization: 8.99 SS G_CDS: 0.32 Total: 9.31 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 5.29 Total: -7.89 kcal Atomic # 7 Polarization: -101.11 SS G_CDS: -4.23 Total: -105.34 kcal Atomic # 8 Polarization: -71.06 SS G_CDS: -4.52 Total: -75.57 kcal Atomic # 14 Polarization: 45.22 SS G_CDS: 2.03 Total: 47.25 kcal Atomic # 16 Polarization: 41.18 SS G_CDS: -0.22 Total: 40.95 kcal Total: -89.96 -1.33 -91.29 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717627118.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.871 kcal (2) G-P(sol) polarization free energy of solvation -89.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.47 seconds