Wall clock time and date at job start Sat Apr 11 2020 07:11:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 S 1.81397 * 109.47136 * 2 1 4 4 O 1.42097 * 108.58241 * 65.50907 * 3 2 1 5 5 O 1.42106 * 108.57838 * 294.48415 * 3 2 1 6 6 C 1.81399 * 101.92356 * 179.97438 * 3 2 1 7 7 C 1.50699 * 109.47379 * 179.97438 * 6 3 2 8 8 O 1.21281 * 120.00125 * 0.02562 * 7 6 3 9 9 N 1.34772 * 120.00318 * 179.97438 * 7 6 3 10 10 C 1.46498 * 120.00181 * 180.02562 * 9 7 6 11 11 H 1.08993 * 108.96023 * 33.90827 * 10 9 7 12 12 C 1.52523 * 109.03669 * 274.99861 * 10 9 7 13 13 C 1.53836 * 111.66737 * 185.38669 * 12 10 9 14 14 C 1.51442 * 107.03930 * 57.20049 * 13 12 10 15 15 H 1.09003 * 109.87607 * 54.70582 * 14 13 12 16 16 C 1.52330 * 117.44651 * 181.23560 * 14 13 12 17 17 N 1.48238 * 105.86751 * 145.79436 * 16 14 13 18 18 C 1.36943 * 125.78571 * 176.82002 * 17 16 14 19 19 H 1.08002 * 119.99788 * 180.02562 * 18 17 16 20 20 C 1.38811 * 119.99622 * 0.30240 * 18 17 16 21 21 N 1.31614 * 120.00467 * 359.72375 * 20 18 17 22 22 Si 1.86801 * 119.99700 * 179.72266 * 20 18 17 23 23 H 1.48504 * 109.47306 * 359.97438 * 22 20 18 24 24 H 1.48499 * 109.47021 * 119.99661 * 22 20 18 25 25 H 1.48501 * 109.47039 * 240.00078 * 22 20 18 26 26 C 1.48660 * 108.43191 * 357.08176 * 17 16 14 27 27 C 1.53316 * 103.31702 * 335.25563 * 26 17 16 28 28 H 1.09007 * 111.57599 * 284.31696 * 27 26 17 29 29 C 1.51297 * 116.99419 * 156.45531 * 27 26 17 30 30 H 1.08990 * 109.47588 * 300.00294 * 1 2 3 31 31 H 1.09004 * 109.46714 * 60.00593 * 1 2 3 32 32 H 1.09002 * 109.47034 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47780 * 239.99563 * 2 1 3 34 34 H 1.09004 * 109.47057 * 119.99826 * 2 1 3 35 35 H 1.09001 * 109.47319 * 59.99993 * 6 3 2 36 36 H 1.08998 * 109.47227 * 299.99998 * 6 3 2 37 37 H 0.97005 * 120.00194 * 0.02562 * 9 7 6 38 38 H 1.09004 * 109.03694 * 64.82678 * 12 10 9 39 39 H 1.09002 * 108.98523 * 305.91593 * 12 10 9 40 40 H 1.09004 * 109.93942 * 297.81615 * 13 12 10 41 41 H 1.09005 * 109.93743 * 176.58321 * 13 12 10 42 42 H 1.09003 * 110.17096 * 26.69654 * 16 14 13 43 43 H 1.09003 * 110.17520 * 264.89292 * 16 14 13 44 44 H 0.96995 * 120.00147 * 180.02562 * 21 20 18 45 45 H 1.09004 * 110.62476 * 93.84391 * 26 17 16 46 46 H 1.09000 * 110.63068 * 216.86290 * 26 17 16 47 47 H 1.09000 * 109.94604 * 64.69709 * 29 27 26 48 48 H 1.09004 * 109.60279 * 303.75984 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7102 0.0000 4 8 1.7592 2.3233 1.2257 5 8 1.7592 2.3232 -1.2259 6 6 3.9329 1.4720 0.0008 7 6 4.6176 2.8144 0.0002 8 8 3.9574 3.8318 -0.0001 9 7 5.9635 2.8845 0.0012 10 6 6.6290 4.1896 0.0013 11 1 6.0274 4.8939 0.5756 12 6 6.7442 4.6894 -1.4352 13 6 7.5531 5.9952 -1.5191 14 6 8.9102 5.7166 -0.9072 15 1 9.3705 4.8605 -1.4006 16 6 9.9013 6.8715 -0.8419 17 7 10.6734 6.6728 0.4079 18 6 11.7179 7.4482 0.8357 19 1 12.2163 7.2173 1.7657 20 6 12.1322 8.5343 0.0771 21 7 11.5249 8.8156 -1.0562 22 14 13.5520 9.5967 0.6646 23 1 14.0596 9.0734 1.9583 24 1 14.6420 9.5677 -0.3435 25 1 13.0826 10.9938 0.8462 26 6 10.1258 5.4852 1.1148 27 6 8.6842 5.4013 0.5998 28 1 8.0492 6.1581 1.0606 29 6 8.0086 4.0492 0.6669 30 1 -0.3634 0.5138 0.8898 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 4.2260 0.9147 -0.8890 36 1 4.2252 0.9150 0.8910 37 1 6.4916 2.0708 0.0019 38 1 5.7441 4.8645 -1.8319 39 1 7.2370 3.9263 -2.0377 40 1 7.0476 6.7823 -0.9597 41 1 7.6694 6.2941 -2.5609 42 1 9.3691 7.8221 -0.8077 43 1 10.5680 6.8440 -1.7039 44 1 11.8147 9.5743 -1.5864 45 1 10.6845 4.5881 0.8480 46 1 10.1393 5.6405 2.1936 47 1 7.8905 3.7437 1.7065 48 1 8.6076 3.3140 0.1294 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717627119.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:52 Heat of formation + Delta-G solvation = -86.058553 kcal Electronic energy + Delta-G solvation = -28489.503358 eV Core-core repulsion = 24479.273045 eV Total energy + Delta-G solvation = -4010.230313 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.42487 -38.96992 -37.29307 -36.32533 -35.82668 -33.79016 -33.61626 -31.94915 -31.34960 -30.23410 -28.55937 -26.20275 -25.02667 -24.54291 -22.05420 -21.63692 -20.61210 -19.80155 -19.43837 -19.18217 -17.85792 -17.28237 -16.81640 -16.70458 -16.38866 -15.66226 -15.54380 -14.91383 -14.76666 -14.40569 -14.34836 -14.07951 -13.82912 -13.64862 -13.42789 -13.11851 -13.03322 -12.43682 -12.35511 -12.33888 -12.28285 -12.11479 -12.09055 -11.90455 -11.68755 -11.43498 -11.29836 -10.98358 -10.90792 -10.81379 -10.73828 -10.55765 -10.47433 -9.98940 -9.91295 -9.86420 -9.58931 -9.45872 -9.10888 -8.58465 -6.80268 -5.67419 -3.00527 -0.55940 2.14431 2.31183 2.63706 3.39885 3.41865 3.47079 3.49688 3.54722 4.06416 4.06601 4.11464 4.46074 4.51302 4.59828 4.65252 4.73615 4.85011 5.06520 5.09454 5.13825 5.29769 5.37034 5.42120 5.51553 5.59695 5.64679 5.65703 5.76093 6.00503 6.10015 6.11903 6.21101 6.26791 6.32866 6.39004 6.54012 6.62505 6.66152 6.84311 7.01453 7.09400 7.58712 7.68039 7.76700 7.86537 8.26120 9.23598 9.84219 10.52019 11.44609 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.041626 B = 0.001916 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 672.503001 B =14606.759601 C =14834.535313 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.621 4.621 3 S 2.450 3.550 4 O -0.918 6.918 5 O -0.918 6.918 6 C -0.663 4.663 7 C 0.539 3.461 8 O -0.526 6.526 9 N -0.712 5.712 10 C 0.144 3.856 11 H 0.091 0.909 12 C -0.126 4.126 13 C -0.097 4.097 14 C -0.117 4.117 15 H 0.062 0.938 16 C 0.188 3.812 17 N -0.610 5.610 18 C -0.225 4.225 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.922 5.922 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 C 0.145 3.855 27 C -0.105 4.105 28 H 0.077 0.923 29 C -0.107 4.107 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.082 0.918 33 H 0.133 0.867 34 H 0.133 0.867 35 H 0.159 0.841 36 H 0.159 0.841 37 H 0.402 0.598 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.039 0.961 43 H 0.049 0.951 44 H 0.251 0.749 45 H 0.020 0.980 46 H 0.039 0.961 47 H 0.066 0.934 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.338 -23.526 0.688 29.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.750 4.750 3 S 2.626 3.374 4 O -0.915 6.915 5 O -0.915 6.915 6 C -0.790 4.790 7 C 0.322 3.678 8 O -0.403 6.403 9 N -0.362 5.362 10 C 0.040 3.960 11 H 0.109 0.891 12 C -0.165 4.165 13 C -0.136 4.136 14 C -0.137 4.137 15 H 0.080 0.920 16 C 0.064 3.936 17 N -0.336 5.336 18 C -0.354 4.354 19 H 0.095 0.905 20 C -0.207 4.207 21 N -0.570 5.570 22 Si 0.741 3.259 23 H -0.206 1.206 24 H -0.218 1.218 25 H -0.218 1.218 26 C 0.020 3.980 27 C -0.125 4.125 28 H 0.095 0.905 29 C -0.146 4.146 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.151 0.849 34 H 0.151 0.849 35 H 0.177 0.823 36 H 0.177 0.823 37 H 0.237 0.763 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.058 0.942 43 H 0.068 0.932 44 H 0.061 0.939 45 H 0.038 0.962 46 H 0.057 0.943 47 H 0.085 0.915 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -19.123 -21.815 0.627 29.017 hybrid contribution 1.700 -0.846 0.197 1.909 sum -17.423 -22.662 0.825 28.597 Atomic orbital electron populations 1.21524 0.90053 1.04973 1.04084 1.30342 1.07924 1.25159 1.11558 1.07573 0.76431 0.77481 0.75925 1.93594 1.79722 1.72425 1.45774 1.93597 1.79710 1.72423 1.45751 1.30906 1.28949 1.05826 1.13346 1.19097 0.83546 0.88291 0.76841 1.90890 1.64170 1.35846 1.49419 1.46047 1.05503 1.10504 1.74152 1.21269 0.93658 0.83492 0.97563 0.89097 1.21928 1.00816 0.98327 0.95412 1.21204 0.95059 0.95968 1.01325 1.22175 0.95657 1.01046 0.94790 0.91984 1.20813 0.90591 0.92895 0.89333 1.45106 1.37072 1.29716 1.21756 1.19114 1.06320 1.05685 1.04245 0.90467 1.24792 0.99797 0.98832 0.97236 1.69968 1.42716 1.30008 1.14271 0.86059 0.81763 0.80347 0.77682 1.20572 1.21839 1.21809 1.21290 0.90324 0.90844 0.95574 1.21981 0.97361 0.95341 0.97853 0.90478 1.21525 0.93953 0.98935 1.00179 0.90613 0.90605 0.89920 0.84905 0.84906 0.82294 0.82281 0.76339 0.91704 0.92128 0.91553 0.91484 0.94236 0.93234 0.93864 0.96229 0.94269 0.91502 0.91365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.92 37.16 0.37 -0.28 16 2 C -0.62 -2.04 6.53 37.16 0.24 -1.79 16 3 S 2.45 20.32 3.96 -107.50 -0.43 19.89 16 4 O -0.92 -11.49 17.95 -59.53 -1.07 -12.56 16 5 O -0.92 -11.49 17.95 -59.53 -1.07 -12.56 16 6 C -0.66 -3.65 6.29 36.01 0.23 -3.42 16 7 C 0.54 6.03 7.80 -10.99 -0.09 5.95 16 8 O -0.53 -8.51 15.25 2.56 0.04 -8.47 16 9 N -0.71 -6.85 5.03 -53.63 -0.27 -7.12 16 10 C 0.14 1.79 2.46 -67.75 -0.17 1.63 16 11 H 0.09 1.33 7.51 -51.93 -0.39 0.94 16 12 C -0.13 -1.68 5.37 -26.54 -0.14 -1.82 16 13 C -0.10 -1.52 5.72 -27.08 -0.15 -1.67 16 14 C -0.12 -2.12 2.27 -90.36 -0.21 -2.32 16 15 H 0.06 1.09 7.95 -51.93 -0.41 0.67 16 16 C 0.19 4.53 5.06 -3.43 -0.02 4.51 16 17 N -0.61 -15.58 3.45 -170.26 -0.59 -16.17 16 18 C -0.23 -6.33 10.30 -15.06 -0.16 -6.48 16 19 H 0.08 2.09 7.83 -52.49 -0.41 1.68 16 20 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 21 N -0.92 -27.35 10.36 55.49 0.58 -26.78 16 22 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 26 C 0.15 2.93 6.92 -2.69 -0.02 2.91 16 27 C -0.11 -1.77 2.50 -89.92 -0.23 -1.99 16 28 H 0.08 1.38 8.04 -51.93 -0.42 0.97 16 29 C -0.11 -1.33 5.15 -27.17 -0.14 -1.47 16 30 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.13 0.10 8.14 -51.92 -0.42 -0.32 16 34 H 0.13 0.10 8.14 -51.92 -0.42 -0.32 16 35 H 0.16 0.26 8.14 -51.92 -0.42 -0.16 16 36 H 0.16 0.25 8.14 -51.93 -0.42 -0.17 16 37 H 0.40 2.41 8.61 -40.82 -0.35 2.05 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.07 1.09 8.06 -51.93 -0.42 0.67 16 41 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.04 1.06 7.60 -51.93 -0.39 0.66 16 43 H 0.05 1.33 7.31 -51.93 -0.38 0.95 16 44 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.07 0.77 8.00 -51.93 -0.42 0.35 16 LS Contribution 391.68 15.07 5.90 5.90 Total: -1.00 -39.75 391.68 -10.72 -50.47 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -8.22 Total: -3.25 kcal Atomic # 6 Polarization: -6.09 SS G_CDS: -0.57 Total: -6.66 kcal Atomic # 7 Polarization: -49.78 SS G_CDS: -0.28 Total: -50.06 kcal Atomic # 8 Polarization: -31.49 SS G_CDS: -2.10 Total: -33.59 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 20.32 SS G_CDS: -0.43 Total: 19.89 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -39.75 -10.72 -50.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717627119.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.590 kcal (2) G-P(sol) polarization free energy of solvation -39.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds