Wall clock time and date at job start Sat Apr 11 2020 07:11:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81398 * 109.47275 * 2 1 4 4 O 1.42106 * 108.57904 * 65.51086 * 3 2 1 5 5 O 1.42100 * 108.57512 * 294.49108 * 3 2 1 6 6 C 1.81392 * 101.92365 * 180.02562 * 3 2 1 7 7 C 1.50698 * 109.47248 * 179.97438 * 6 3 2 8 8 O 1.21282 * 120.00149 * 0.02562 * 7 6 3 9 9 N 1.34781 * 120.00068 * 179.97438 * 7 6 3 10 10 C 1.46500 * 120.00256 * 179.97438 * 9 7 6 11 11 H 1.09008 * 109.72929 * 35.65927 * 10 9 7 12 12 C 1.53326 * 109.73792 * 275.00516 * 10 9 7 13 13 C 1.52593 * 108.43836 * 176.20491 * 12 10 9 14 14 C 1.53083 * 111.01160 * 62.32811 * 13 12 10 15 15 H 1.09001 * 112.54224 * 73.73828 * 14 13 12 16 16 C 1.55341 * 106.41204 * 197.22836 * 14 13 12 17 17 N 1.47173 * 106.96625 * 91.62919 * 16 14 13 18 18 C 1.36931 * 125.65048 * 180.91537 * 17 16 14 19 19 H 1.08001 * 120.00004 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00423 * 0.02794 * 18 17 16 21 21 N 1.31619 * 119.99451 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00210 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47001 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47146 * 119.99741 * 22 20 18 25 25 H 1.48500 * 109.47052 * 239.99421 * 22 20 18 26 26 C 1.47816 * 108.69942 * 0.96142 * 17 16 14 27 27 C 1.53900 * 104.06246 * 23.34921 * 26 17 16 28 28 H 1.08995 * 108.65219 * 77.06782 * 27 26 17 29 29 C 1.50742 * 113.02723 * 198.52661 * 27 26 17 30 30 H 1.09001 * 109.46981 * 299.99483 * 1 2 3 31 31 H 1.08991 * 109.47352 * 59.99825 * 1 2 3 32 32 H 1.09001 * 109.47307 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46849 * 239.99988 * 2 1 3 34 34 H 1.08999 * 109.47052 * 120.00396 * 2 1 3 35 35 H 1.09003 * 109.46916 * 60.00099 * 6 3 2 36 36 H 1.09001 * 109.47361 * 300.00117 * 6 3 2 37 37 H 0.97000 * 119.99527 * 0.02562 * 9 7 6 38 38 H 1.09002 * 109.67640 * 295.95374 * 12 10 9 39 39 H 1.08995 * 109.67908 * 56.45853 * 12 10 9 40 40 H 1.08999 * 109.16157 * 182.77079 * 13 12 10 41 41 H 1.08994 * 109.16098 * 301.96415 * 13 12 10 42 42 H 1.08997 * 109.96638 * 211.00591 * 16 14 13 43 43 H 1.09002 * 109.96175 * 332.25256 * 16 14 13 44 44 H 0.96998 * 119.99898 * 180.02562 * 21 20 18 45 45 H 1.09003 * 110.51224 * 264.70481 * 26 17 16 46 46 H 1.09001 * 110.51517 * 141.99224 * 26 17 16 47 47 H 1.09002 * 109.02149 * 304.54382 * 29 27 26 48 48 H 1.09000 * 109.02492 * 185.70906 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7592 2.3231 -1.2258 6 6 3.9329 1.4719 -0.0008 7 6 4.6176 2.8144 -0.0015 8 8 3.9574 3.8318 -0.0010 9 7 5.9636 2.8844 -0.0017 10 6 6.6292 4.1895 -0.0029 11 1 6.0538 4.8967 0.5946 12 6 6.7522 4.7066 -1.4411 13 6 7.3616 6.1050 -1.4007 14 6 8.7717 6.0723 -0.8057 15 1 9.5051 5.6489 -1.4920 16 6 9.1126 7.5337 -0.4041 17 7 8.6982 7.7015 0.9981 18 6 8.8082 8.8533 1.7304 19 1 8.4740 8.8743 2.7572 20 6 9.3493 9.9939 1.1532 21 7 9.7570 9.9680 -0.0980 22 14 9.5000 11.5649 2.1525 23 1 8.9745 11.3328 3.5218 24 1 10.9275 11.9665 2.2311 25 1 8.7174 12.6444 1.4987 26 6 8.1446 6.4204 1.4853 27 6 8.7775 5.3643 0.5618 28 1 9.8081 5.1993 0.8759 29 6 8.0375 4.0511 0.5739 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 4.2252 0.9149 -0.8910 36 1 4.2260 0.9146 0.8890 37 1 6.4915 2.0707 -0.0017 38 1 7.3967 4.0419 -2.0163 39 1 5.7652 4.7496 -1.9014 40 1 7.4089 6.5040 -2.4139 41 1 6.7312 6.7524 -0.7912 42 1 10.1849 7.7050 -0.4982 43 1 8.5667 8.2312 -1.0394 44 1 10.1354 10.7649 -0.5013 45 1 7.0590 6.4117 1.3877 46 1 8.4374 6.2469 2.5208 47 1 7.9673 3.6923 1.6008 48 1 8.5940 3.3242 -0.0178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717627120.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:58 Heat of formation + Delta-G solvation = -87.668616 kcal Electronic energy + Delta-G solvation = -28886.502950 eV Core-core repulsion = 24876.202819 eV Total energy + Delta-G solvation = -4010.300130 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.37109 -38.98093 -37.23589 -36.26410 -35.68830 -33.69136 -33.50855 -31.80862 -31.29569 -30.28678 -28.71882 -26.02916 -24.90158 -24.47243 -22.20857 -21.91369 -20.86890 -19.89586 -19.16190 -18.46881 -17.63434 -17.31875 -16.75788 -16.67276 -16.35277 -15.85842 -15.58366 -14.75807 -14.73359 -14.56776 -14.00104 -13.85712 -13.72701 -13.62195 -13.52253 -13.05786 -12.99216 -12.54887 -12.39652 -12.28161 -12.22645 -12.09206 -12.05288 -11.70717 -11.63075 -11.39249 -11.13469 -11.00592 -10.95378 -10.86059 -10.66042 -10.53082 -10.40359 -9.94176 -9.89018 -9.64454 -9.52446 -9.43553 -9.08997 -8.54306 -6.75410 -5.65304 -2.97927 -0.50727 2.22363 2.36648 2.70386 3.44042 3.46040 3.49781 3.52096 3.59606 4.10770 4.10951 4.17629 4.51047 4.55154 4.64511 4.69011 4.83591 4.90499 5.10475 5.12879 5.26170 5.39013 5.45060 5.45849 5.55749 5.59649 5.71008 5.78953 5.82574 5.92567 6.04309 6.15827 6.22593 6.34804 6.40632 6.45858 6.56460 6.64684 6.82356 6.94853 7.04807 7.16826 7.62727 7.68150 7.85241 7.89094 8.31489 9.28432 9.88517 10.55331 11.46483 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.002254 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.992772 B =12417.865383 C =12923.080728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.622 4.622 3 S 2.450 3.550 4 O -0.917 6.917 5 O -0.918 6.918 6 C -0.663 4.663 7 C 0.538 3.462 8 O -0.523 6.523 9 N -0.711 5.711 10 C 0.139 3.861 11 H 0.100 0.900 12 C -0.126 4.126 13 C -0.104 4.104 14 C -0.113 4.113 15 H 0.073 0.927 16 C 0.183 3.817 17 N -0.606 5.606 18 C -0.224 4.224 19 H 0.077 0.923 20 C -0.011 4.011 21 N -0.923 5.923 22 Si 0.911 3.089 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.291 1.291 26 C 0.138 3.862 27 C -0.093 4.093 28 H 0.072 0.928 29 C -0.106 4.106 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.132 0.868 34 H 0.132 0.868 35 H 0.158 0.842 36 H 0.159 0.841 37 H 0.400 0.600 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.038 0.962 43 H 0.049 0.951 44 H 0.251 0.749 45 H 0.021 0.979 46 H 0.036 0.964 47 H 0.064 0.936 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.943 -27.519 -2.392 29.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.750 4.750 3 S 2.626 3.374 4 O -0.914 6.914 5 O -0.915 6.915 6 C -0.790 4.790 7 C 0.321 3.679 8 O -0.399 6.399 9 N -0.362 5.362 10 C 0.036 3.964 11 H 0.117 0.883 12 C -0.164 4.164 13 C -0.142 4.142 14 C -0.132 4.132 15 H 0.091 0.909 16 C 0.058 3.942 17 N -0.332 5.332 18 C -0.352 4.352 19 H 0.095 0.905 20 C -0.207 4.207 21 N -0.571 5.571 22 Si 0.742 3.258 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.218 1.218 26 C 0.012 3.988 27 C -0.113 4.113 28 H 0.091 0.909 29 C -0.144 4.144 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.150 0.850 34 H 0.151 0.849 35 H 0.176 0.824 36 H 0.177 0.823 37 H 0.234 0.766 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.090 0.910 42 H 0.056 0.944 43 H 0.067 0.933 44 H 0.061 0.939 45 H 0.039 0.961 46 H 0.054 0.946 47 H 0.083 0.917 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -11.776 -25.759 -2.399 28.424 hybrid contribution 1.109 -0.542 0.448 1.313 sum -10.667 -26.301 -1.952 28.449 Atomic orbital electron populations 1.21521 0.90075 1.04924 1.04100 1.30347 1.07915 1.25263 1.11491 1.07585 0.76447 0.77442 0.75958 1.93601 1.79694 1.72344 1.45745 1.93596 1.79719 1.72371 1.45774 1.30904 1.28976 1.05864 1.13244 1.19080 0.83530 0.88268 0.77006 1.90911 1.64114 1.35796 1.49077 1.45986 1.05506 1.10354 1.74306 1.21275 0.93662 0.83416 0.98070 0.88254 1.21919 1.00937 0.98098 0.95467 1.21471 0.96448 0.95126 1.01191 1.22479 0.96081 0.99581 0.95077 0.90863 1.21466 0.98693 0.88638 0.85366 1.44570 1.72282 1.06744 1.09655 1.19114 1.34460 0.87074 0.94578 0.90477 1.24792 1.01365 0.98023 0.96488 1.69968 1.47438 1.27912 1.11772 0.86051 0.77220 0.83526 0.79037 1.20551 1.21880 1.21798 1.21513 0.95671 0.86212 0.95433 1.21366 0.99516 0.93008 0.97439 0.90936 1.21133 0.93899 0.98633 1.00761 0.90607 0.90614 0.89965 0.84955 0.84937 0.82366 0.82337 0.76577 0.92150 0.91856 0.92099 0.91030 0.94352 0.93291 0.93900 0.96116 0.94569 0.91701 0.91872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.92 37.16 0.37 -0.35 16 2 C -0.62 -2.29 6.52 37.16 0.24 -2.05 16 3 S 2.45 21.81 3.96 -107.50 -0.43 21.39 16 4 O -0.92 -12.17 17.95 -59.51 -1.07 -13.23 16 5 O -0.92 -12.08 17.94 -59.54 -1.07 -13.15 16 6 C -0.66 -3.98 6.29 36.00 0.23 -3.76 16 7 C 0.54 6.45 7.82 -10.98 -0.09 6.36 16 8 O -0.52 -9.07 15.30 2.56 0.04 -9.03 16 9 N -0.71 -7.26 5.10 -53.73 -0.27 -7.53 16 10 C 0.14 1.87 2.29 -67.86 -0.16 1.71 16 11 H 0.10 1.66 6.28 -51.92 -0.33 1.33 16 12 C -0.13 -1.78 5.52 -26.77 -0.15 -1.92 16 13 C -0.10 -1.78 4.63 -26.90 -0.12 -1.91 16 14 C -0.11 -2.04 3.61 -88.82 -0.32 -2.36 16 15 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 16 C 0.18 4.43 4.66 -2.43 -0.01 4.42 16 17 N -0.61 -15.64 3.41 -169.62 -0.58 -16.22 16 18 C -0.22 -6.37 10.28 -15.06 -0.15 -6.53 16 19 H 0.08 2.14 7.83 -52.49 -0.41 1.73 16 20 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 21 N -0.92 -27.56 10.32 55.49 0.57 -26.99 16 22 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 23 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 24 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 25 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 26 C 0.14 2.86 6.19 -2.85 -0.02 2.84 16 27 C -0.09 -1.56 2.81 -90.76 -0.26 -1.81 16 28 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 29 C -0.11 -1.31 4.85 -27.96 -0.14 -1.45 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.13 0.15 8.14 -51.92 -0.42 -0.28 16 34 H 0.13 0.15 8.14 -51.92 -0.42 -0.27 16 35 H 0.16 0.31 8.14 -51.92 -0.42 -0.11 16 36 H 0.16 0.32 8.14 -51.92 -0.42 -0.10 16 37 H 0.40 2.46 8.60 -40.82 -0.35 2.11 16 38 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.07 1.44 7.16 -51.93 -0.37 1.07 16 42 H 0.04 1.03 7.50 -51.93 -0.39 0.64 16 43 H 0.05 1.33 6.99 -51.93 -0.36 0.96 16 44 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.02 0.45 6.15 -51.93 -0.32 0.13 16 46 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 47 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 48 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 386.69 15.07 5.83 5.83 Total: -1.00 -40.23 386.69 -10.67 -50.90 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -8.01 Total: -2.40 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: -0.67 Total: -7.20 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -0.28 Total: -50.74 kcal Atomic # 8 Polarization: -33.32 SS G_CDS: -2.10 Total: -35.42 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Atomic # 16 Polarization: 21.81 SS G_CDS: -0.43 Total: 21.39 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -40.23 -10.67 -50.90 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717627120.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.764 kcal (2) G-P(sol) polarization free energy of solvation -40.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.905 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds