Wall clock time and date at job start Sat Apr 11 2020 07:11:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81398 * 109.47275 * 2 1 4 4 O 1.42106 * 108.57904 * 65.51086 * 3 2 1 5 5 O 1.42100 * 108.57512 * 294.49108 * 3 2 1 6 6 C 1.81392 * 101.92365 * 180.02562 * 3 2 1 7 7 C 1.50698 * 109.47248 * 179.97438 * 6 3 2 8 8 O 1.21282 * 120.00149 * 0.02562 * 7 6 3 9 9 N 1.34781 * 120.00068 * 179.97438 * 7 6 3 10 10 C 1.46500 * 120.00256 * 179.97438 * 9 7 6 11 11 H 1.09008 * 109.72929 * 35.65927 * 10 9 7 12 12 C 1.53326 * 109.73792 * 275.00516 * 10 9 7 13 13 C 1.52593 * 108.43836 * 176.20491 * 12 10 9 14 14 C 1.53083 * 111.01160 * 62.32811 * 13 12 10 15 15 H 1.09001 * 112.54224 * 73.73828 * 14 13 12 16 16 C 1.55341 * 106.41204 * 197.22836 * 14 13 12 17 17 N 1.47173 * 106.96625 * 91.62919 * 16 14 13 18 18 C 1.36931 * 125.65048 * 180.91537 * 17 16 14 19 19 H 1.08001 * 120.00004 * 180.02562 * 18 17 16 20 20 C 1.38812 * 120.00423 * 0.02794 * 18 17 16 21 21 N 1.31619 * 119.99451 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00210 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47001 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47146 * 119.99741 * 22 20 18 25 25 H 1.48500 * 109.47052 * 239.99421 * 22 20 18 26 26 C 1.47816 * 108.69942 * 0.96142 * 17 16 14 27 27 C 1.53900 * 104.06246 * 23.34921 * 26 17 16 28 28 H 1.08995 * 108.65219 * 77.06782 * 27 26 17 29 29 C 1.50742 * 113.02723 * 198.52661 * 27 26 17 30 30 H 1.09001 * 109.46981 * 299.99483 * 1 2 3 31 31 H 1.08991 * 109.47352 * 59.99825 * 1 2 3 32 32 H 1.09001 * 109.47307 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.46849 * 239.99988 * 2 1 3 34 34 H 1.08999 * 109.47052 * 120.00396 * 2 1 3 35 35 H 1.09003 * 109.46916 * 60.00099 * 6 3 2 36 36 H 1.09001 * 109.47361 * 300.00117 * 6 3 2 37 37 H 0.97000 * 119.99527 * 0.02562 * 9 7 6 38 38 H 1.09002 * 109.67640 * 295.95374 * 12 10 9 39 39 H 1.08995 * 109.67908 * 56.45853 * 12 10 9 40 40 H 1.08999 * 109.16157 * 182.77079 * 13 12 10 41 41 H 1.08994 * 109.16098 * 301.96415 * 13 12 10 42 42 H 1.08997 * 109.96638 * 211.00591 * 16 14 13 43 43 H 1.09002 * 109.96175 * 332.25256 * 16 14 13 44 44 H 0.96998 * 119.99898 * 180.02562 * 21 20 18 45 45 H 1.09003 * 110.51224 * 264.70481 * 26 17 16 46 46 H 1.09001 * 110.51517 * 141.99224 * 26 17 16 47 47 H 1.09002 * 109.02149 * 304.54382 * 29 27 26 48 48 H 1.09000 * 109.02492 * 185.70906 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.7592 2.3232 1.2258 5 8 1.7592 2.3231 -1.2258 6 6 3.9329 1.4719 -0.0008 7 6 4.6176 2.8144 -0.0015 8 8 3.9574 3.8318 -0.0010 9 7 5.9636 2.8844 -0.0017 10 6 6.6292 4.1895 -0.0029 11 1 6.0538 4.8967 0.5946 12 6 6.7522 4.7066 -1.4411 13 6 7.3616 6.1050 -1.4007 14 6 8.7717 6.0723 -0.8057 15 1 9.5051 5.6489 -1.4920 16 6 9.1126 7.5337 -0.4041 17 7 8.6982 7.7015 0.9981 18 6 8.8082 8.8533 1.7304 19 1 8.4740 8.8743 2.7572 20 6 9.3493 9.9939 1.1532 21 7 9.7570 9.9680 -0.0980 22 14 9.5000 11.5649 2.1525 23 1 8.9745 11.3328 3.5218 24 1 10.9275 11.9665 2.2311 25 1 8.7174 12.6444 1.4987 26 6 8.1446 6.4204 1.4853 27 6 8.7775 5.3643 0.5618 28 1 9.8081 5.1993 0.8759 29 6 8.0375 4.0511 0.5739 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 4.2252 0.9149 -0.8910 36 1 4.2260 0.9146 0.8890 37 1 6.4915 2.0707 -0.0017 38 1 7.3967 4.0419 -2.0163 39 1 5.7652 4.7496 -1.9014 40 1 7.4089 6.5040 -2.4139 41 1 6.7312 6.7524 -0.7912 42 1 10.1849 7.7050 -0.4982 43 1 8.5667 8.2312 -1.0394 44 1 10.1354 10.7649 -0.5013 45 1 7.0590 6.4117 1.3877 46 1 8.4374 6.2469 2.5208 47 1 7.9673 3.6923 1.6008 48 1 8.5940 3.3242 -0.0178 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717627120.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:55 Heat of formation + Delta-G solvation = -121.039346 kcal Electronic energy + Delta-G solvation = -28887.950013 eV Core-core repulsion = 24876.202819 eV Total energy + Delta-G solvation = -4011.747194 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 2.15 seconds Orbital eigenvalues (eV) -41.48099 -40.29925 -37.98972 -37.15340 -36.94457 -35.09967 -33.97529 -33.43962 -32.48414 -31.49405 -30.19108 -27.63466 -26.68117 -24.98205 -23.63970 -23.15582 -21.99983 -21.57153 -19.89674 -19.65316 -18.94598 -18.32991 -18.09121 -17.35580 -17.19255 -16.82658 -16.75944 -16.34163 -15.85274 -15.55059 -15.18997 -15.09740 -14.99540 -14.91044 -14.09882 -14.04377 -13.96927 -13.79553 -13.59091 -13.37762 -13.26409 -13.15721 -13.07290 -13.00392 -12.90239 -12.72994 -12.50877 -12.33316 -12.21956 -12.14760 -12.02187 -11.81783 -11.77197 -11.52964 -11.29810 -11.20695 -11.03993 -10.88611 -10.70407 -10.13047 -8.88212 -7.86250 -5.21007 -1.07025 1.38670 1.41783 1.43742 1.53812 1.82908 1.93951 2.47416 2.88714 3.09456 3.31012 3.50050 3.62962 3.70072 3.75155 3.78359 3.91208 3.99622 4.09911 4.14774 4.19939 4.31334 4.35014 4.45803 4.50917 4.54169 4.61044 4.72177 4.76920 4.77725 4.88037 4.90469 5.01181 5.09763 5.13783 5.16205 5.23107 5.31880 5.41233 5.42389 5.49628 5.53592 5.73970 5.80582 6.19210 6.36388 7.09977 7.11641 7.77410 8.42465 9.23990 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022395 B = 0.002254 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1249.992772 B =12417.865383 C =12923.080728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.579 4.579 3 S 2.414 3.586 4 O -0.984 6.984 5 O -0.983 6.983 6 C -0.639 4.639 7 C 0.521 3.479 8 O -0.591 6.591 9 N -0.691 5.691 10 C 0.141 3.859 11 H 0.055 0.945 12 C -0.115 4.115 13 C -0.098 4.098 14 C -0.095 4.095 15 H 0.105 0.895 16 C 0.189 3.811 17 N -0.629 5.629 18 C -0.241 4.241 19 H 0.078 0.922 20 C -0.070 4.070 21 N -0.951 5.951 22 Si 0.978 3.022 23 H -0.267 1.267 24 H -0.288 1.288 25 H -0.294 1.294 26 C 0.130 3.870 27 C -0.077 4.077 28 H 0.080 0.920 29 C -0.094 4.094 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.174 0.826 34 H 0.173 0.827 35 H 0.212 0.788 36 H 0.211 0.789 37 H 0.427 0.573 38 H 0.098 0.902 39 H 0.047 0.953 40 H 0.059 0.941 41 H 0.026 0.974 42 H 0.004 0.996 43 H 0.005 0.995 44 H 0.246 0.754 45 H 0.011 0.989 46 H 0.040 0.960 47 H 0.084 0.916 48 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.808 -33.126 -2.143 34.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.712 4.712 3 S 2.600 3.400 4 O -0.981 6.981 5 O -0.981 6.981 6 C -0.769 4.769 7 C 0.307 3.693 8 O -0.472 6.472 9 N -0.343 5.343 10 C 0.036 3.964 11 H 0.073 0.927 12 C -0.153 4.153 13 C -0.137 4.137 14 C -0.114 4.114 15 H 0.123 0.877 16 C 0.064 3.936 17 N -0.355 5.355 18 C -0.370 4.370 19 H 0.096 0.904 20 C -0.262 4.262 21 N -0.600 5.600 22 Si 0.806 3.194 23 H -0.192 1.192 24 H -0.215 1.215 25 H -0.221 1.221 26 C 0.005 3.995 27 C -0.097 4.097 28 H 0.098 0.902 29 C -0.132 4.132 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.130 0.870 33 H 0.192 0.808 34 H 0.191 0.809 35 H 0.229 0.771 36 H 0.228 0.772 37 H 0.266 0.734 38 H 0.116 0.884 39 H 0.065 0.935 40 H 0.078 0.922 41 H 0.045 0.955 42 H 0.022 0.978 43 H 0.023 0.977 44 H 0.055 0.945 45 H 0.029 0.971 46 H 0.058 0.942 47 H 0.103 0.897 48 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.642 -31.387 -2.131 33.211 hybrid contribution 0.704 1.145 0.383 1.398 sum -9.938 -30.242 -1.748 31.881 Atomic orbital electron populations 1.21738 0.91232 1.06401 1.03241 1.30030 1.06660 1.18936 1.15572 1.08020 0.78021 0.80212 0.73721 1.93522 1.81393 1.75945 1.47279 1.93518 1.81385 1.75932 1.47222 1.30722 1.24789 1.03071 1.18285 1.20104 0.83846 0.89812 0.75580 1.90907 1.65580 1.38870 1.51807 1.45682 1.05231 1.10056 1.73316 1.20956 0.94145 0.84471 0.96792 0.92695 1.21813 1.00469 0.96425 0.96592 1.21333 0.95482 0.96783 1.00067 1.22393 0.96924 0.95382 0.96711 0.87678 1.21248 0.95774 0.92190 0.84365 1.44909 1.72331 1.07895 1.10395 1.19494 1.33952 0.88566 0.94996 0.90422 1.25659 1.01680 1.01229 0.97678 1.70199 1.48300 1.28298 1.13243 0.85009 0.77031 0.79238 0.78073 1.19152 1.21480 1.22142 1.21723 0.95205 0.85778 0.96753 1.21290 1.00121 0.93737 0.94569 0.90209 1.21059 0.92636 0.96628 1.02913 0.91758 0.91702 0.86981 0.80828 0.80883 0.77137 0.77236 0.73415 0.88358 0.93461 0.92179 0.95526 0.97751 0.97664 0.94474 0.97142 0.94163 0.89743 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.22 9.92 71.98 0.71 -0.51 16 2 C -0.58 -1.61 6.52 71.98 0.47 -1.14 16 3 S 2.41 40.87 3.96 -56.49 -0.22 40.64 16 4 O -0.98 -27.58 17.95 -125.76 -2.26 -29.83 16 5 O -0.98 -27.24 17.94 -125.74 -2.26 -29.50 16 6 C -0.64 -4.87 6.29 71.24 0.45 -4.43 16 7 C 0.52 11.52 7.82 87.66 0.69 12.20 16 8 O -0.59 -21.52 15.30 -0.17 0.00 -21.52 16 9 N -0.69 -11.56 5.10 -442.29 -2.26 -13.81 16 10 C 0.14 3.54 2.29 45.04 0.10 3.64 16 11 H 0.05 1.90 6.28 -2.38 -0.01 1.89 16 12 C -0.11 -3.07 5.52 30.57 0.17 -2.90 16 13 C -0.10 -3.45 4.63 30.49 0.14 -3.31 16 14 C -0.10 -3.39 3.61 -9.63 -0.03 -3.43 16 15 H 0.11 3.15 8.14 -2.39 -0.02 3.13 16 16 C 0.19 9.65 4.66 87.06 0.41 10.06 16 17 N -0.63 -33.99 3.41 -690.56 -2.35 -36.34 16 18 C -0.24 -14.29 10.28 84.03 0.86 -13.43 16 19 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 20 C -0.07 -4.18 5.49 84.86 0.47 -3.71 16 21 N -0.95 -59.71 10.32 21.65 0.22 -59.49 16 22 Si 0.98 48.16 29.55 68.60 2.03 50.19 16 23 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 24 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 25 H -0.29 -14.54 7.11 99.48 0.71 -13.84 16 26 C 0.13 5.53 6.19 86.43 0.53 6.07 16 27 C -0.08 -2.44 2.81 -10.89 -0.03 -2.47 16 28 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 29 C -0.09 -1.95 4.85 29.80 0.14 -1.80 16 30 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 33 H 0.17 -0.80 8.14 -2.39 -0.02 -0.82 16 34 H 0.17 -0.77 8.14 -2.39 -0.02 -0.79 16 35 H 0.21 -0.64 8.14 -2.39 -0.02 -0.66 16 36 H 0.21 -0.58 8.14 -2.39 -0.02 -0.60 16 37 H 0.43 2.54 8.60 -92.71 -0.80 1.75 16 38 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 39 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.03 1.15 7.16 -2.39 -0.02 1.13 16 42 H 0.00 0.24 7.50 -2.39 -0.02 0.23 16 43 H 0.01 0.30 6.99 -2.39 -0.02 0.28 16 44 H 0.25 14.95 8.31 -92.71 -0.77 14.18 16 45 H 0.01 0.48 6.15 -2.39 -0.01 0.47 16 46 H 0.04 1.65 8.14 -2.39 -0.02 1.64 16 47 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -103.37 386.69 -1.86 -105.24 By element: Atomic # 1 Polarization: -0.58 SS G_CDS: 0.16 Total: -0.42 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 5.08 Total: -5.15 kcal Atomic # 7 Polarization: -105.26 SS G_CDS: -4.39 Total: -109.65 kcal Atomic # 8 Polarization: -76.33 SS G_CDS: -4.52 Total: -80.85 kcal Atomic # 14 Polarization: 48.16 SS G_CDS: 2.03 Total: 50.19 kcal Atomic # 16 Polarization: 40.87 SS G_CDS: -0.22 Total: 40.64 kcal Total: -103.37 -1.86 -105.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717627120.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.804 kcal (2) G-P(sol) polarization free energy of solvation -103.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -105.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.15 seconds