Wall clock time and date at job start Sat Apr 11 2020 07:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47093 * 2 1 4 4 C 1.42902 * 114.00245 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47384 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47108 * 180.02562 * 5 4 3 7 7 O 1.21277 * 120.00148 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00177 * 180.02562 * 6 5 4 9 9 C 1.47031 * 125.64646 * 0.02562 * 8 6 5 10 10 C 1.54327 * 107.26879 * 181.04030 * 9 8 6 11 11 H 1.08997 * 110.71798 * 263.82943 * 10 9 8 12 12 N 1.46502 * 110.71560 * 140.55624 * 10 9 8 13 13 C 1.34776 * 119.99905 * 86.45652 * 12 10 9 14 14 O 1.21284 * 120.00008 * 359.97438 * 13 12 10 15 15 C 1.50698 * 120.00102 * 179.97438 * 13 12 10 16 16 S 1.81000 * 109.47594 * 179.97438 * 15 13 12 17 17 C 1.76192 * 100.00388 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99958 * 359.97438 * 17 16 15 19 19 C 1.38799 * 120.00288 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00190 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99604 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47579 * 89.99843 * 21 19 17 23 23 H 1.48506 * 109.46949 * 210.00136 * 21 19 17 24 24 H 1.48499 * 109.47065 * 329.99514 * 21 19 17 25 25 C 1.55156 * 102.94181 * 22.19441 * 10 9 8 26 26 C 1.47422 * 125.65218 * 179.97438 * 8 6 5 27 27 H 1.09001 * 110.46274 * 274.77499 * 26 8 6 28 28 C 1.53003 * 110.36711 * 37.05205 * 26 8 6 29 29 H 1.09008 * 109.46947 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47192 * 299.99480 * 1 2 3 31 31 H 1.08995 * 109.47388 * 59.99632 * 1 2 3 32 32 H 1.09004 * 109.46628 * 240.00437 * 2 1 3 33 33 H 1.08995 * 109.47388 * 120.00368 * 2 1 3 34 34 H 1.09004 * 109.47168 * 60.00005 * 4 3 2 35 35 H 1.09005 * 109.47094 * 300.00700 * 4 3 2 36 36 H 1.08998 * 109.46893 * 60.00250 * 5 4 3 37 37 H 1.09000 * 109.47334 * 299.99924 * 5 4 3 38 38 H 1.08998 * 109.88059 * 61.62395 * 9 8 6 39 39 H 1.08994 * 109.87878 * 300.45675 * 9 8 6 40 40 H 0.97003 * 120.00356 * 266.44967 * 12 10 9 41 41 H 1.09008 * 109.47298 * 299.99777 * 15 13 12 42 42 H 1.09008 * 109.47411 * 59.99480 * 15 13 12 43 43 H 0.97004 * 120.00267 * 180.02562 * 20 19 17 44 44 H 1.08999 * 111.00338 * 82.57390 * 25 10 9 45 45 H 1.09003 * 110.99778 * 206.42172 * 25 10 9 46 46 H 1.08995 * 109.47601 * 175.40893 * 28 26 8 47 47 H 1.09000 * 109.47156 * 295.41382 * 28 26 8 48 48 H 1.09003 * 109.47021 * 55.40917 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9384 0.0001 6 6 5.3276 3.0574 -0.0011 7 8 6.0151 2.0582 -0.0020 8 7 5.9073 4.2741 -0.0003 9 6 5.1971 5.5615 0.0024 10 6 6.2660 6.6744 -0.0243 11 1 6.4715 7.0359 0.9833 12 7 5.8469 7.7747 -0.8959 13 6 5.0746 8.7652 -0.4069 14 8 4.7263 8.7453 0.7547 15 6 4.6440 9.8974 -1.3034 16 16 3.6234 11.0582 -0.3615 17 6 3.2715 12.2440 -1.6161 18 1 3.6665 12.1096 -2.6123 19 6 2.4875 13.3515 -1.3241 20 7 2.2250 14.2377 -2.2613 21 14 1.8060 13.5851 0.3994 22 1 2.7730 14.3654 1.2126 23 1 0.5161 14.3173 0.3267 24 1 1.5871 12.2581 1.0291 25 6 7.5065 5.9507 -0.6116 26 6 7.3583 4.5346 -0.0008 27 1 7.7489 4.5173 1.0167 28 6 8.0843 3.5028 -0.8664 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8333 0.9768 -0.8908 35 1 3.8340 0.9764 0.8891 36 1 3.4230 3.4213 0.8906 37 1 3.4222 3.4225 -0.8894 38 1 4.5927 5.6496 0.9052 39 1 4.5620 5.6363 -0.8802 40 1 6.1252 7.7905 -1.8250 41 1 5.5247 10.4141 -1.6847 42 1 4.0659 9.5004 -2.1379 43 1 1.6773 15.0119 -2.0571 44 1 7.4586 5.9142 -1.6999 45 1 8.4295 6.4251 -0.2784 46 1 9.1429 3.7561 -0.9228 47 1 7.9705 2.5130 -0.4242 48 1 7.6564 3.5042 -1.8690 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718675276.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:05 Heat of formation + Delta-G solvation = -124.365366 kcal Electronic energy + Delta-G solvation = -27387.380821 eV Core-core repulsion = 23375.489400 eV Total energy + Delta-G solvation = -4011.891421 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.83082 -39.45856 -38.40133 -37.59095 -34.36394 -33.24848 -32.47567 -32.02578 -30.89762 -30.25578 -28.63436 -26.17329 -25.65387 -24.57973 -23.13223 -22.56922 -21.41835 -20.59109 -19.14895 -17.98290 -17.64077 -17.23722 -16.73563 -16.52822 -16.38701 -15.84656 -15.50998 -15.12539 -15.00050 -14.82035 -14.38257 -14.10851 -13.96356 -13.75358 -13.58792 -13.44597 -12.98567 -12.83288 -12.74289 -12.63494 -12.46275 -12.43254 -12.18742 -12.08381 -11.78895 -11.54920 -11.44087 -11.37349 -11.30310 -11.21279 -11.04018 -10.65014 -9.97263 -9.94474 -9.89809 -9.66480 -9.23266 -9.03665 -8.99155 -8.55524 -6.96729 -6.32346 -4.04781 2.28678 2.38250 2.69884 2.80887 3.18279 3.30368 3.40147 3.47313 3.58808 4.00927 4.16616 4.29651 4.41556 4.55823 4.64426 4.65137 4.67227 4.70872 4.80385 4.87049 4.91414 5.00194 5.01627 5.06740 5.12581 5.18508 5.24044 5.32046 5.36075 5.37697 5.44941 5.45256 5.52169 5.56357 5.66452 5.69187 5.77060 5.78208 5.86726 5.94295 6.15355 6.35708 6.83463 7.12821 7.43734 7.81128 7.90515 8.33398 8.38092 9.13627 10.76800 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010335 B = 0.002224 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.484659 B =12587.283192 C =14754.157873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.392 6.392 4 C 0.080 3.920 5 C -0.139 4.139 6 C 0.539 3.461 7 O -0.541 6.541 8 N -0.614 5.614 9 C 0.085 3.915 10 C 0.140 3.860 11 H 0.107 0.893 12 N -0.728 5.728 13 C 0.533 3.467 14 O -0.515 6.515 15 C -0.125 4.125 16 S -0.140 6.140 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.879 5.879 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.137 4.137 26 C 0.136 3.864 27 H 0.081 0.919 28 C -0.162 4.162 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.057 0.943 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.403 0.597 41 H 0.098 0.902 42 H 0.098 0.902 43 H 0.271 0.729 44 H 0.085 0.915 45 H 0.093 0.907 46 H 0.062 0.938 47 H 0.085 0.915 48 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.544 -26.594 2.219 27.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.312 6.312 4 C 0.003 3.997 5 C -0.178 4.178 6 C 0.328 3.672 7 O -0.418 6.418 8 N -0.349 5.349 9 C -0.040 4.040 10 C 0.033 3.967 11 H 0.125 0.875 12 N -0.383 5.383 13 C 0.319 3.681 14 O -0.389 6.389 15 C -0.276 4.276 16 S 0.086 5.914 17 C -0.670 4.670 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.682 3.318 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.175 4.175 26 C 0.033 3.967 27 H 0.099 0.901 28 C -0.219 4.219 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.075 0.925 36 H 0.122 0.878 37 H 0.121 0.879 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.238 0.762 41 H 0.116 0.884 42 H 0.117 0.883 43 H 0.081 0.919 44 H 0.103 0.897 45 H 0.112 0.888 46 H 0.081 0.919 47 H 0.104 0.896 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 7.061 -26.888 4.108 28.101 hybrid contribution 0.249 0.375 -1.283 1.360 sum 7.311 -26.512 2.824 27.646 Atomic orbital electron populations 1.21755 0.93592 1.02280 1.03330 1.22451 0.95615 0.83473 1.00183 1.87835 1.20956 1.26818 1.95553 1.22079 0.80887 0.95142 1.01585 1.21480 0.92086 0.98279 1.05994 1.20011 0.89944 0.81590 0.75627 1.90662 1.65035 1.35640 1.50493 1.48509 1.07450 1.05455 1.73464 1.22606 0.95813 0.82235 1.03299 1.21805 0.92460 0.85947 0.96479 0.87545 1.45951 1.54423 1.23572 1.14340 1.20370 0.77078 0.82202 0.88452 1.90715 1.53754 1.76858 1.17527 1.23286 1.04395 0.97823 1.02069 1.84800 1.63523 1.24282 1.18807 1.22302 1.38203 1.08589 0.97902 0.89363 1.24719 0.94588 0.94382 0.97651 1.69933 1.37022 1.11526 1.33095 0.86734 0.79407 0.81198 0.84495 1.19209 1.19926 1.15909 1.23203 0.98417 0.94276 1.01627 1.21895 0.80526 0.94322 0.99941 0.90125 1.22131 0.99441 1.00600 0.99735 0.91071 0.91737 0.91738 0.93339 0.93334 0.92491 0.92478 0.87835 0.87937 0.90101 0.90465 0.76225 0.88369 0.88336 0.91902 0.89666 0.88808 0.91890 0.89630 0.92586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.06 0.45 6.66 37.16 0.25 0.70 16 3 O -0.39 -3.96 10.34 -35.23 -0.36 -4.33 16 4 C 0.08 0.75 5.23 37.15 0.19 0.94 16 5 C -0.14 -1.24 5.26 -27.89 -0.15 -1.38 16 6 C 0.54 5.62 7.63 -10.99 -0.08 5.54 16 7 O -0.54 -6.91 13.70 5.56 0.08 -6.84 16 8 N -0.61 -5.67 3.24 -163.03 -0.53 -6.20 16 9 C 0.08 0.78 6.24 -3.06 -0.02 0.76 16 10 C 0.14 1.28 3.23 -66.09 -0.21 1.07 16 11 H 0.11 1.13 7.70 -51.93 -0.40 0.73 16 12 N -0.73 -7.62 5.13 -52.03 -0.27 -7.88 16 13 C 0.53 8.35 7.84 -10.99 -0.09 8.26 16 14 O -0.51 -10.00 15.59 5.55 0.09 -9.91 16 15 C -0.13 -2.23 6.16 36.00 0.22 -2.01 16 16 S -0.14 -3.41 18.55 -107.50 -1.99 -5.41 16 17 C -0.52 -14.65 10.04 30.94 0.31 -14.34 16 18 H 0.09 2.58 8.03 -52.49 -0.42 2.16 16 19 C 0.10 2.74 5.50 -17.43 -0.10 2.64 16 20 N -0.88 -26.11 13.97 55.49 0.78 -25.34 16 21 Si 0.86 21.35 27.74 -169.99 -4.71 16.64 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 24 H -0.24 -5.83 6.74 56.52 0.38 -5.45 16 25 C -0.14 -0.91 6.11 -24.57 -0.15 -1.06 16 26 C 0.14 1.09 3.77 -66.41 -0.25 0.84 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 C -0.16 -1.31 8.59 37.16 0.32 -0.99 16 29 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.53 8.10 -51.93 -0.42 0.11 16 35 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.71 8.03 -51.93 -0.42 0.29 16 40 H 0.40 3.14 8.52 -40.82 -0.35 2.79 16 41 H 0.10 1.62 8.14 -51.91 -0.42 1.20 16 42 H 0.10 1.62 8.14 -51.91 -0.42 1.20 16 43 H 0.27 7.48 8.31 -40.82 -0.34 7.14 16 44 H 0.08 0.51 7.92 -51.93 -0.41 0.10 16 45 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 46 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 47 H 0.08 0.88 6.09 -51.93 -0.32 0.57 16 48 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 406.54 15.07 6.13 6.13 Total: -1.00 -34.45 406.54 -8.40 -42.85 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -8.23 Total: -0.08 kcal Atomic # 6 Polarization: -0.26 SS G_CDS: 0.63 Total: 0.37 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: -0.02 Total: -39.42 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.20 Total: -21.08 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.71 Total: 16.64 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -1.99 Total: -5.41 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -34.45 -8.40 -42.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718675276.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.517 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds