Wall clock time and date at job start Sat Apr 11 2020 07:12:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42897 * 109.47093 * 2 1 4 4 C 1.42902 * 114.00245 * 180.02562 * 3 2 1 5 5 C 1.52995 * 109.47384 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47108 * 180.02562 * 5 4 3 7 7 O 1.21277 * 120.00148 * 359.97438 * 6 5 4 8 8 N 1.34775 * 120.00177 * 180.02562 * 6 5 4 9 9 C 1.47031 * 125.64646 * 0.02562 * 8 6 5 10 10 C 1.54327 * 107.26879 * 181.04030 * 9 8 6 11 11 H 1.08997 * 110.71798 * 263.82943 * 10 9 8 12 12 N 1.46502 * 110.71560 * 140.55624 * 10 9 8 13 13 C 1.34776 * 119.99905 * 86.45652 * 12 10 9 14 14 O 1.21284 * 120.00008 * 359.97438 * 13 12 10 15 15 C 1.50698 * 120.00102 * 179.97438 * 13 12 10 16 16 S 1.81000 * 109.47594 * 179.97438 * 15 13 12 17 17 C 1.76192 * 100.00388 * 179.97438 * 16 15 13 18 18 H 1.08001 * 119.99958 * 359.97438 * 17 16 15 19 19 C 1.38799 * 120.00288 * 180.02562 * 17 16 15 20 20 N 1.31622 * 120.00190 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 119.99604 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47579 * 89.99843 * 21 19 17 23 23 H 1.48506 * 109.46949 * 210.00136 * 21 19 17 24 24 H 1.48499 * 109.47065 * 329.99514 * 21 19 17 25 25 C 1.55156 * 102.94181 * 22.19441 * 10 9 8 26 26 C 1.47422 * 125.65218 * 179.97438 * 8 6 5 27 27 H 1.09001 * 110.46274 * 274.77499 * 26 8 6 28 28 C 1.53003 * 110.36711 * 37.05205 * 26 8 6 29 29 H 1.09008 * 109.46947 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47192 * 299.99480 * 1 2 3 31 31 H 1.08995 * 109.47388 * 59.99632 * 1 2 3 32 32 H 1.09004 * 109.46628 * 240.00437 * 2 1 3 33 33 H 1.08995 * 109.47388 * 120.00368 * 2 1 3 34 34 H 1.09004 * 109.47168 * 60.00005 * 4 3 2 35 35 H 1.09005 * 109.47094 * 300.00700 * 4 3 2 36 36 H 1.08998 * 109.46893 * 60.00250 * 5 4 3 37 37 H 1.09000 * 109.47334 * 299.99924 * 5 4 3 38 38 H 1.08998 * 109.88059 * 61.62395 * 9 8 6 39 39 H 1.08994 * 109.87878 * 300.45675 * 9 8 6 40 40 H 0.97003 * 120.00356 * 266.44967 * 12 10 9 41 41 H 1.09008 * 109.47298 * 299.99777 * 15 13 12 42 42 H 1.09008 * 109.47411 * 59.99480 * 15 13 12 43 43 H 0.97004 * 120.00267 * 180.02562 * 20 19 17 44 44 H 1.08999 * 111.00338 * 82.57390 * 25 10 9 45 45 H 1.09003 * 110.99778 * 206.42172 * 25 10 9 46 46 H 1.08995 * 109.47601 * 175.40893 * 28 26 8 47 47 H 1.09000 * 109.47156 * 295.41382 * 28 26 8 48 48 H 1.09003 * 109.47021 * 55.40917 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8253 2.9384 0.0001 6 6 5.3276 3.0574 -0.0011 7 8 6.0151 2.0582 -0.0020 8 7 5.9073 4.2741 -0.0003 9 6 5.1971 5.5615 0.0024 10 6 6.2660 6.6744 -0.0243 11 1 6.4715 7.0359 0.9833 12 7 5.8469 7.7747 -0.8959 13 6 5.0746 8.7652 -0.4069 14 8 4.7263 8.7453 0.7547 15 6 4.6440 9.8974 -1.3034 16 16 3.6234 11.0582 -0.3615 17 6 3.2715 12.2440 -1.6161 18 1 3.6665 12.1096 -2.6123 19 6 2.4875 13.3515 -1.3241 20 7 2.2250 14.2377 -2.2613 21 14 1.8060 13.5851 0.3994 22 1 2.7730 14.3654 1.2126 23 1 0.5161 14.3173 0.3267 24 1 1.5871 12.2581 1.0291 25 6 7.5065 5.9507 -0.6116 26 6 7.3583 4.5346 -0.0008 27 1 7.7489 4.5173 1.0167 28 6 8.0843 3.5028 -0.8664 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 1.8932 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.8333 0.9768 -0.8908 35 1 3.8340 0.9764 0.8891 36 1 3.4230 3.4213 0.8906 37 1 3.4222 3.4225 -0.8894 38 1 4.5927 5.6496 0.9052 39 1 4.5620 5.6363 -0.8802 40 1 6.1252 7.7905 -1.8250 41 1 5.5247 10.4141 -1.6847 42 1 4.0659 9.5004 -2.1379 43 1 1.6773 15.0119 -2.0571 44 1 7.4586 5.9142 -1.6999 45 1 8.4295 6.4251 -0.2784 46 1 9.1429 3.7561 -0.9228 47 1 7.9705 2.5130 -0.4242 48 1 7.6564 3.5042 -1.8690 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718675276.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:04 Heat of formation + Delta-G solvation = -148.402488 kcal Electronic energy + Delta-G solvation = -27388.423148 eV Core-core repulsion = 23375.489400 eV Total energy + Delta-G solvation = -4012.933749 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.64353 -40.56018 -39.16282 -38.44966 -35.39195 -34.65026 -33.95780 -32.66567 -31.98100 -30.91848 -29.77476 -27.82802 -26.85608 -25.32646 -23.71254 -23.43219 -22.11452 -21.70302 -19.97963 -19.82645 -18.43395 -18.08992 -17.71272 -17.42249 -17.34597 -17.06469 -16.73135 -16.34920 -16.24340 -15.77947 -15.50842 -15.11868 -14.89694 -14.78236 -14.62192 -14.59613 -14.32302 -13.85053 -13.54166 -13.32128 -13.27230 -13.19613 -13.17242 -13.02639 -12.97290 -12.78466 -12.65947 -12.51431 -12.19708 -12.08202 -12.03077 -11.89293 -11.83121 -11.15301 -10.99833 -10.79507 -10.63790 -10.50321 -10.21732 -9.76831 -8.96373 -8.49642 -6.19712 1.01027 1.33131 1.46607 1.48795 1.53467 1.56770 1.72483 2.22054 2.27094 2.69024 2.76292 2.88852 3.32121 3.44822 3.68627 3.85291 3.92330 3.97671 3.99743 4.10518 4.14837 4.20078 4.28585 4.32869 4.35321 4.41479 4.47087 4.52167 4.57506 4.66436 4.71173 4.72480 4.76985 4.86935 4.89641 4.93386 5.01345 5.13964 5.21084 5.25739 5.41914 5.47849 5.72580 6.13893 6.16668 6.35214 6.45751 6.95842 7.01812 7.19040 8.62575 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010335 B = 0.002224 C = 0.001897 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2708.484659 B =12587.283192 C =14754.157873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.410 6.410 4 C 0.084 3.916 5 C -0.134 4.134 6 C 0.536 3.464 7 O -0.567 6.567 8 N -0.611 5.611 9 C 0.088 3.912 10 C 0.139 3.861 11 H 0.095 0.905 12 N -0.701 5.701 13 C 0.540 3.460 14 O -0.556 6.556 15 C -0.113 4.113 16 S -0.175 6.175 17 C -0.527 4.527 18 H 0.063 0.937 19 C 0.044 3.956 20 N -0.918 5.918 21 Si 0.914 3.086 22 H -0.263 1.263 23 H -0.262 1.262 24 H -0.235 1.235 25 C -0.120 4.120 26 C 0.130 3.870 27 H 0.083 0.917 28 C -0.154 4.154 29 H 0.091 0.909 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.052 0.948 36 H 0.108 0.892 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.082 0.918 40 H 0.420 0.580 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.276 0.724 44 H 0.100 0.900 45 H 0.114 0.886 46 H 0.083 0.917 47 H 0.061 0.939 48 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.444 -27.652 2.306 29.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.330 6.330 4 C 0.007 3.993 5 C -0.174 4.174 6 C 0.326 3.674 7 O -0.447 6.447 8 N -0.345 5.345 9 C -0.036 4.036 10 C 0.033 3.967 11 H 0.114 0.886 12 N -0.356 5.356 13 C 0.326 3.674 14 O -0.433 6.433 15 C -0.264 4.264 16 S 0.051 5.949 17 C -0.675 4.675 18 H 0.081 0.919 19 C -0.162 4.162 20 N -0.556 5.556 21 Si 0.736 3.264 22 H -0.188 1.188 23 H -0.187 1.187 24 H -0.159 1.159 25 C -0.158 4.158 26 C 0.027 3.973 27 H 0.101 0.899 28 C -0.211 4.211 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.126 0.874 37 H 0.128 0.872 38 H 0.090 0.910 39 H 0.100 0.900 40 H 0.258 0.742 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.085 0.915 44 H 0.118 0.882 45 H 0.132 0.868 46 H 0.102 0.898 47 H 0.079 0.921 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 7.991 -27.964 4.154 29.379 hybrid contribution 0.072 0.566 -1.394 1.507 sum 8.063 -27.398 2.760 28.693 Atomic orbital electron populations 1.21776 0.92755 1.03468 1.02753 1.22668 0.96363 0.82601 1.00943 1.87812 1.21159 1.28381 1.95642 1.22024 0.80731 0.95353 1.01237 1.21459 0.91216 0.98206 1.06518 1.20223 0.90373 0.81543 0.75221 1.90659 1.65687 1.36512 1.51852 1.48535 1.08166 1.05107 1.72735 1.22533 0.95780 0.82202 1.03133 1.21869 0.93659 0.85253 0.95965 0.88649 1.45645 1.52317 1.22264 1.15332 1.19933 0.77540 0.82546 0.87379 1.90713 1.55741 1.77843 1.19008 1.23284 1.03971 0.97223 1.01904 1.84715 1.65598 1.25228 1.19329 1.22472 1.37551 1.09618 0.97866 0.91892 1.25576 0.95080 0.94310 1.01199 1.70016 1.38169 1.12346 1.35042 0.85868 0.79237 0.81159 0.80116 1.18771 1.18652 1.15857 1.23172 0.97772 0.92566 1.02311 1.22065 0.79725 0.95156 1.00347 0.89901 1.22035 1.00746 0.99286 0.99072 0.89038 0.92308 0.92264 0.92540 0.92615 0.92742 0.92922 0.87427 0.87151 0.91003 0.89985 0.74151 0.86686 0.86694 0.91450 0.88166 0.86807 0.89796 0.92053 0.93018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 71.98 0.74 -1.07 16 2 C 0.05 0.73 6.66 71.98 0.48 1.21 16 3 O -0.41 -8.12 10.34 -148.98 -1.54 -9.66 16 4 C 0.08 1.54 5.23 71.98 0.38 1.92 16 5 C -0.13 -2.31 5.26 29.85 0.16 -2.15 16 6 C 0.54 10.79 7.63 87.66 0.67 11.45 16 7 O -0.57 -14.38 13.70 -3.02 -0.04 -14.42 16 8 N -0.61 -10.37 3.24 -788.10 -2.56 -12.93 16 9 C 0.09 1.46 6.24 86.73 0.54 2.00 16 10 C 0.14 2.17 3.23 46.18 0.15 2.32 16 11 H 0.10 1.82 7.70 -2.39 -0.02 1.81 16 12 N -0.70 -12.52 5.13 -436.91 -2.24 -14.77 16 13 C 0.54 15.78 7.84 87.66 0.69 16.47 16 14 O -0.56 -20.89 15.59 -3.04 -0.05 -20.94 16 15 C -0.11 -3.81 6.16 71.24 0.44 -3.37 16 16 S -0.18 -8.40 18.55 -56.49 -1.05 -9.44 16 17 C -0.53 -29.74 10.04 67.95 0.68 -29.06 16 18 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 19 C 0.04 2.51 5.50 84.86 0.47 2.98 16 20 N -0.92 -55.04 13.97 21.65 0.30 -54.73 16 21 Si 0.91 44.07 27.74 68.60 1.90 45.97 16 22 H -0.26 -12.38 7.11 99.48 0.71 -11.68 16 23 H -0.26 -11.94 7.11 99.48 0.71 -11.24 16 24 H -0.23 -11.22 6.74 99.48 0.67 -10.55 16 25 C -0.12 -1.16 6.11 31.99 0.20 -0.97 16 26 C 0.13 1.79 3.77 45.48 0.17 1.96 16 27 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 28 C -0.15 -2.20 8.59 71.98 0.62 -1.59 16 29 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.05 1.01 8.10 -2.38 -0.02 0.99 16 35 H 0.05 1.00 8.10 -2.38 -0.02 0.98 16 36 H 0.11 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.08 1.31 8.03 -2.39 -0.02 1.29 16 40 H 0.42 4.86 8.52 -92.71 -0.79 4.07 16 41 H 0.11 3.52 8.14 -2.39 -0.02 3.51 16 42 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 43 H 0.28 15.35 8.31 -92.71 -0.77 14.57 16 44 H 0.10 0.75 7.92 -2.39 -0.02 0.73 16 45 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.06 1.22 6.09 -2.39 -0.01 1.21 16 48 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -75.36 406.54 1.22 -74.14 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 0.12 Total: 14.68 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 6.37 Total: 2.10 kcal Atomic # 7 Polarization: -77.93 SS G_CDS: -4.49 Total: -82.42 kcal Atomic # 8 Polarization: -43.39 SS G_CDS: -1.63 Total: -45.02 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.90 Total: 45.97 kcal Atomic # 16 Polarization: -8.40 SS G_CDS: -1.05 Total: -9.44 kcal Total: -75.36 1.22 -74.14 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718675276.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.262 kcal (2) G-P(sol) polarization free energy of solvation -75.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds