Wall clock time and date at job start Sat Apr 11 2020 07:12:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 O 1.42895 * 109.46990 * 2 1 4 4 C 1.42904 * 113.99618 * 179.97438 * 3 2 1 5 5 C 1.53003 * 109.46998 * 180.02562 * 4 3 2 6 6 C 1.50701 * 109.47100 * 179.97438 * 5 4 3 7 7 O 1.21289 * 119.99782 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00085 * 179.97438 * 6 5 4 9 9 C 1.47418 * 125.64758 * 359.95144 * 8 6 5 10 10 C 1.54915 * 104.83107 * 204.17202 * 9 8 6 11 11 H 1.09002 * 111.00539 * 81.06145 * 10 9 8 12 12 N 1.46500 * 111.03417 * 204.89999 * 10 9 8 13 13 C 1.34773 * 120.00200 * 270.38731 * 12 10 9 14 14 O 1.21280 * 119.99742 * 0.02562 * 13 12 10 15 15 C 1.50700 * 120.00375 * 180.02562 * 13 12 10 16 16 S 1.80997 * 109.47198 * 180.02562 * 15 13 12 17 17 C 1.76201 * 100.00075 * 180.02562 * 16 15 13 18 18 H 1.08005 * 119.99852 * 359.97438 * 17 16 15 19 19 C 1.38795 * 120.00363 * 180.02562 * 17 16 15 20 20 N 1.31629 * 119.99748 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 120.00314 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.46825 * 0.02562 * 21 19 17 23 23 H 1.48503 * 109.47013 * 119.99839 * 21 19 17 24 24 H 1.48500 * 109.47135 * 240.00144 * 21 19 17 25 25 C 1.55154 * 101.58176 * 322.98725 * 10 9 8 26 26 C 1.47029 * 125.64745 * 179.97438 * 8 6 5 27 27 H 1.08996 * 110.00664 * 298.38696 * 26 8 6 28 28 C 1.52995 * 109.87916 * 59.47934 * 26 8 6 29 29 H 1.08995 * 109.46979 * 300.00448 * 1 2 3 30 30 H 1.08999 * 109.46578 * 59.99785 * 1 2 3 31 31 H 1.08994 * 109.47415 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46815 * 239.99803 * 2 1 3 33 33 H 1.08999 * 109.46578 * 120.00215 * 2 1 3 34 34 H 1.08999 * 109.46884 * 60.00043 * 4 3 2 35 35 H 1.09004 * 109.47139 * 300.00154 * 4 3 2 36 36 H 1.08997 * 109.46928 * 60.00127 * 5 4 3 37 37 H 1.08999 * 109.47155 * 299.99474 * 5 4 3 38 38 H 1.08995 * 110.37279 * 85.33616 * 9 8 6 39 39 H 1.08997 * 110.36990 * 323.00814 * 9 8 6 40 40 H 0.97001 * 120.00052 * 90.39778 * 12 10 9 41 41 H 1.09001 * 109.47222 * 300.00926 * 15 13 12 42 42 H 1.08997 * 109.46546 * 60.00773 * 15 13 12 43 43 H 0.96998 * 120.00243 * 179.97438 * 20 19 17 44 44 H 1.09004 * 110.72212 * 153.86391 * 25 10 9 45 45 H 1.08997 * 110.72125 * 276.96414 * 25 10 9 46 46 H 1.09002 * 109.46599 * 177.80603 * 28 26 8 47 47 H 1.08996 * 109.47347 * 297.80387 * 28 26 8 48 48 H 1.08997 * 109.47232 * 57.81223 * 28 26 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 6 3.8255 2.9383 0.0012 6 6 5.3278 3.0572 0.0024 7 8 6.0152 2.0580 0.0033 8 7 5.9075 4.2740 0.0026 9 6 5.1955 5.5648 0.0006 10 6 6.2013 6.5715 -0.6116 11 1 6.2022 6.5100 -1.6999 12 7 5.9154 7.9374 -0.1658 13 6 5.0698 8.7137 -0.8720 14 8 4.5452 8.2813 -1.8764 15 6 4.7761 10.1190 -0.4138 16 16 3.6137 10.8975 -1.5621 17 6 3.4531 12.4818 -0.8078 18 1 3.9986 12.7070 0.0967 19 6 2.6249 13.4400 -1.3755 20 7 1.9597 13.1654 -2.4777 21 14 2.4541 15.1194 -0.5754 22 1 3.3002 15.1751 0.6437 23 1 2.8923 16.1692 -1.5299 24 1 1.0347 15.3489 -0.2044 25 6 7.5453 6.0648 -0.0248 26 6 7.3546 4.5337 0.0043 27 1 7.8065 4.1207 0.9061 28 6 7.9973 3.9058 -1.2340 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8340 0.9763 -0.8892 35 1 3.8333 0.9766 0.8908 36 1 3.4224 3.4215 0.8911 37 1 3.4232 3.4221 -0.8889 38 1 4.9378 5.8576 1.0184 39 1 4.2986 5.5025 -0.6156 40 1 6.3348 8.2832 0.6376 41 1 4.3378 10.0918 0.5838 42 1 5.7020 10.6937 -0.3883 43 1 1.3806 13.8349 -2.8742 44 1 8.3770 6.3378 -0.6744 45 1 7.6988 6.4559 0.9809 46 1 9.0628 4.1354 -1.2462 47 1 7.8588 2.8250 -1.2069 48 1 7.5284 4.3098 -2.1312 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718675277.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:08 Heat of formation + Delta-G solvation = -126.837676 kcal Electronic energy + Delta-G solvation = -27331.514953 eV Core-core repulsion = 23319.516325 eV Total energy + Delta-G solvation = -4011.998628 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.76877 -39.34675 -38.35930 -37.58250 -34.27508 -33.16106 -32.46593 -32.00283 -30.69493 -30.23996 -28.46637 -26.20827 -25.52735 -24.60361 -23.09442 -22.65724 -21.07793 -20.52292 -19.27193 -17.97851 -17.75100 -16.91683 -16.67481 -16.63091 -15.96666 -15.71038 -15.42483 -15.01591 -14.83972 -14.72200 -14.57865 -14.01630 -13.93858 -13.79289 -13.57381 -13.25996 -13.20862 -12.72916 -12.67714 -12.61132 -12.48997 -12.24858 -12.05987 -12.03750 -11.62615 -11.49294 -11.41291 -11.31594 -11.09979 -11.06310 -10.99997 -10.78388 -10.12281 -9.90458 -9.84901 -9.54117 -9.19453 -9.10403 -8.92287 -8.28525 -6.54694 -6.25555 -3.96518 2.32164 2.43118 2.92842 2.94294 3.19120 3.24172 3.28707 3.41781 3.63629 4.08381 4.16575 4.24373 4.45673 4.57744 4.69041 4.69743 4.75421 4.81819 4.91896 4.94823 5.04799 5.05782 5.08976 5.09981 5.16238 5.26616 5.34755 5.38765 5.40631 5.47583 5.50684 5.53799 5.56391 5.60359 5.73344 5.80221 5.80765 5.83245 5.94523 6.07188 6.11192 6.45479 6.87505 7.16025 7.54175 7.56747 7.84055 8.31613 8.46750 9.20112 10.81885 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.010960 B = 0.002096 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.088156 B =13357.365944 C =15466.282888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.059 3.941 3 O -0.392 6.392 4 C 0.080 3.920 5 C -0.139 4.139 6 C 0.539 3.461 7 O -0.542 6.542 8 N -0.612 5.612 9 C 0.084 3.916 10 C 0.139 3.861 11 H 0.107 0.893 12 N -0.729 5.729 13 C 0.534 3.466 14 O -0.513 6.513 15 C -0.154 4.154 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.136 4.136 26 C 0.139 3.861 27 H 0.079 0.921 28 C -0.166 4.166 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.401 0.599 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.268 0.732 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.066 0.934 47 H 0.071 0.929 48 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.154 -22.412 8.203 25.220 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.017 4.017 3 O -0.311 6.311 4 C 0.003 3.997 5 C -0.178 4.178 6 C 0.328 3.672 7 O -0.420 6.420 8 N -0.347 5.347 9 C -0.041 4.041 10 C 0.032 3.968 11 H 0.125 0.875 12 N -0.384 5.384 13 C 0.320 3.680 14 O -0.386 6.386 15 C -0.305 4.305 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.196 1.196 23 H -0.206 1.206 24 H -0.205 1.205 25 C -0.175 4.175 26 C 0.035 3.965 27 H 0.097 0.903 28 C -0.224 4.224 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.236 0.764 41 H 0.109 0.891 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.111 0.889 45 H 0.102 0.898 46 H 0.085 0.915 47 H 0.090 0.910 48 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.348 -23.516 6.376 25.449 hybrid contribution 0.813 1.670 2.091 2.796 sum 8.160 -21.847 8.467 24.810 Atomic orbital electron populations 1.21755 0.93595 1.02258 1.03344 1.22452 0.95616 0.83493 1.00170 1.87838 1.20948 1.26792 1.95550 1.22080 0.80885 0.95153 1.01574 1.21481 0.91985 0.98297 1.06080 1.20040 0.89994 0.81558 0.75593 1.90696 1.65375 1.35532 1.50364 1.48463 1.07284 1.05544 1.73410 1.22864 0.96785 0.82479 1.01943 1.21921 0.92898 0.81391 1.00619 0.87543 1.45915 1.49068 1.13032 1.30370 1.20398 0.77556 0.86936 0.83070 1.90718 1.49131 1.74132 1.24623 1.23536 1.06009 0.94798 1.06125 1.85418 1.53295 1.12135 1.32443 1.22899 1.32611 0.98848 1.14026 0.90842 1.24999 0.94697 0.99014 0.94912 1.70021 1.26886 1.34839 1.18473 0.86113 0.78118 0.82119 0.79117 1.19616 1.20565 1.20543 1.23037 0.97973 0.93784 1.02666 1.21505 0.80877 0.94598 0.99494 0.90275 1.22178 1.00412 1.02601 0.97162 0.91771 0.91688 0.91090 0.93313 0.93381 0.92444 0.92537 0.87921 0.87658 0.90529 0.89389 0.76400 0.89078 0.89093 0.92195 0.88899 0.89775 0.91534 0.90953 0.92184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 10.28 37.16 0.38 -0.65 16 2 C 0.06 0.47 6.66 37.16 0.25 0.72 16 3 O -0.39 -4.14 10.34 -35.23 -0.36 -4.51 16 4 C 0.08 0.79 5.23 37.16 0.19 0.98 16 5 C -0.14 -1.31 5.08 -27.88 -0.14 -1.46 16 6 C 0.54 5.96 7.63 -10.99 -0.08 5.88 16 7 O -0.54 -7.39 14.89 5.55 0.08 -7.31 16 8 N -0.61 -5.98 3.08 -163.02 -0.50 -6.49 16 9 C 0.08 0.80 6.39 -2.53 -0.02 0.79 16 10 C 0.14 1.37 3.37 -65.78 -0.22 1.15 16 11 H 0.11 1.28 7.63 -51.93 -0.40 0.88 16 12 N -0.73 -8.09 5.22 -51.73 -0.27 -8.36 16 13 C 0.53 8.90 7.85 -10.99 -0.09 8.82 16 14 O -0.51 -10.64 15.55 5.56 0.09 -10.56 16 15 C -0.15 -2.87 6.16 36.01 0.22 -2.65 16 16 S -0.06 -1.55 20.57 -107.50 -2.21 -3.76 16 17 C -0.54 -14.84 9.50 30.94 0.29 -14.55 16 18 H 0.07 1.93 7.80 -52.48 -0.41 1.52 16 19 C 0.07 2.04 5.49 -17.43 -0.10 1.95 16 20 N -0.87 -25.68 13.22 55.49 0.73 -24.95 16 21 Si 0.92 20.99 29.55 -169.99 -5.02 15.97 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 C -0.14 -0.95 6.13 -24.90 -0.15 -1.11 16 26 C 0.14 1.17 3.50 -66.95 -0.23 0.94 16 27 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 28 C -0.17 -1.44 9.05 37.16 0.34 -1.11 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.58 8.10 -51.93 -0.42 0.16 16 35 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 36 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 37 H 0.11 0.98 7.84 -51.93 -0.41 0.57 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.09 0.94 7.47 -51.93 -0.39 0.55 16 40 H 0.40 3.25 8.54 -40.82 -0.35 2.90 16 41 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 42 H 0.09 1.56 8.14 -51.92 -0.42 1.14 16 43 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.09 0.58 7.83 -51.93 -0.41 0.18 16 45 H 0.08 0.46 7.99 -51.93 -0.42 0.05 16 46 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 47 H 0.07 0.77 6.76 -51.93 -0.35 0.42 16 48 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 LS Contribution 410.14 15.07 6.18 6.18 Total: -1.00 -35.06 410.14 -8.82 -43.87 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -8.17 Total: 0.20 kcal Atomic # 6 Polarization: -0.94 SS G_CDS: 0.64 Total: -0.30 kcal Atomic # 7 Polarization: -39.76 SS G_CDS: -0.04 Total: -39.80 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -0.20 Total: -22.37 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Atomic # 16 Polarization: -1.55 SS G_CDS: -2.21 Total: -3.76 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -35.06 -8.82 -43.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718675277.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.964 kcal (2) G-P(sol) polarization free energy of solvation -35.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.873 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds