Wall clock time and date at job start Sat Apr 11 2020 07:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99487 * 2 1 4 4 C 1.53002 * 109.46716 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46421 * 300.00496 * 4 3 2 6 6 N 1.46498 * 109.47059 * 60.02279 * 5 4 3 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 4 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 S 1.81000 * 109.47389 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99715 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00516 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.31634 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00011 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46850 * 90.00589 * 15 13 11 17 17 H 1.48498 * 109.47329 * 210.00016 * 15 13 11 18 18 H 1.48499 * 109.47220 * 330.01003 * 15 13 11 19 19 C 1.53045 * 109.44446 * 59.96997 * 4 3 2 20 20 C 1.53195 * 109.31243 * 181.37446 * 19 4 3 21 21 N 1.46927 * 108.77585 * 305.37102 * 20 19 4 22 22 C 1.34781 * 120.62582 * 233.58856 * 21 20 19 23 23 C 1.50701 * 120.00225 * 0.02562 * 22 21 20 24 24 O 1.21281 * 120.00055 * 180.02562 * 22 21 20 25 25 C 1.46917 * 118.74482 * 53.60201 * 21 20 19 26 26 C 1.53040 * 109.45806 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47168 * 299.99533 * 1 2 3 29 29 H 1.09000 * 109.47177 * 60.00131 * 1 2 3 30 30 H 1.09003 * 109.46931 * 60.00234 * 3 2 1 31 31 H 1.08993 * 109.47684 * 299.99601 * 3 2 1 32 32 H 1.09004 * 109.47066 * 300.02547 * 5 4 3 33 33 H 1.08994 * 109.46974 * 180.02562 * 5 4 3 34 34 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 35 35 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 36 36 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 37 37 H 0.96991 * 119.99795 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.50062 * 301.32623 * 19 4 3 39 39 H 1.09004 * 109.49770 * 61.42748 * 19 4 3 40 40 H 1.08997 * 109.59189 * 185.57444 * 20 19 4 41 41 H 1.09004 * 109.70148 * 65.22372 * 20 19 4 42 42 H 1.09007 * 109.46828 * 90.00551 * 23 22 21 43 43 H 1.08998 * 109.47709 * 210.00482 * 23 22 21 44 44 H 1.09006 * 109.47084 * 330.00706 * 23 22 21 45 45 H 1.08999 * 109.59302 * 186.60736 * 25 21 20 46 46 H 1.09004 * 109.58702 * 66.17961 * 25 21 20 47 47 H 1.08993 * 109.50164 * 298.58401 * 26 4 3 48 48 H 1.08998 * 109.49635 * 58.65385 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9862 0.4256 1.2502 6 7 3.3907 -0.9129 1.2497 7 6 3.6537 -1.7678 2.2579 8 8 4.3793 -1.4273 3.1681 9 6 3.0462 -3.1470 2.2544 10 16 3.5841 -4.0471 3.7296 11 6 2.7501 -5.5781 3.4749 12 1 2.1345 -5.7185 2.5987 13 6 2.8851 -6.6042 4.3999 14 7 3.6358 -6.4333 5.4676 15 14 2.0003 -8.2271 4.1302 16 1 2.8745 -9.1448 3.3562 17 1 1.6794 -8.8402 5.4441 18 1 0.7440 -7.9867 3.3759 19 6 3.9868 0.4243 -1.2485 20 6 5.5113 0.2751 -1.2275 21 7 6.1148 1.6067 -1.0806 22 6 7.0461 2.0386 -1.9539 23 6 7.4773 1.1535 -3.0948 24 8 7.5371 3.1397 -1.8216 25 6 5.6840 2.4582 0.0365 26 6 4.1575 2.5829 0.0013 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.6637 0.9664 2.1400 33 1 5.0727 0.3399 1.2509 34 1 2.8106 -1.1855 0.5216 35 1 1.9593 -3.0652 2.2552 36 1 3.3693 -3.6840 1.3626 37 1 3.7298 -7.1502 6.1140 38 1 3.5248 -0.5629 -1.2602 39 1 3.6876 0.9772 -2.1389 40 1 5.8471 -0.1774 -2.1605 41 1 5.8074 -0.3548 -0.3887 42 1 6.8417 1.3409 -3.9604 43 1 8.5141 1.3707 -3.3516 44 1 7.3878 0.1085 -2.7978 45 1 6.1337 3.4462 -0.0626 46 1 5.9921 2.0072 0.9797 47 1 3.8567 3.1154 -0.9009 48 1 3.8167 3.1324 0.8788 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001718988469.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:28 Heat of formation + Delta-G solvation = -115.250315 kcal Electronic energy + Delta-G solvation = -29006.377783 eV Core-core repulsion = 24994.881621 eV Total energy + Delta-G solvation = -4011.496162 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.04639 -39.45622 -38.37497 -37.37944 -34.79655 -33.19095 -32.40447 -31.80057 -30.04624 -29.40449 -28.22486 -26.44773 -25.71876 -25.26078 -23.89177 -23.28935 -20.39380 -20.20027 -18.76347 -17.75896 -17.41248 -16.74039 -16.43091 -16.19302 -16.01755 -15.78486 -15.69232 -15.40852 -14.85455 -14.78639 -14.34624 -14.23799 -13.99235 -13.81541 -13.59853 -13.46561 -13.05853 -12.85031 -12.62094 -12.59229 -12.47762 -12.30767 -12.30153 -11.80610 -11.67861 -11.56738 -11.06063 -11.05075 -10.99743 -10.90601 -10.90091 -10.72608 -10.06119 -9.97964 -9.78092 -9.26947 -9.04705 -8.95614 -8.64663 -8.18650 -6.46097 -6.19377 -3.89103 2.34303 2.68403 3.05844 3.22255 3.23192 3.26418 3.30413 3.42402 3.85389 4.15539 4.21954 4.23122 4.40724 4.48623 4.68165 4.68943 4.85343 4.88429 4.94774 4.96228 5.02931 5.09288 5.10665 5.15593 5.16898 5.23176 5.32071 5.35218 5.40925 5.46767 5.48593 5.49794 5.59189 5.64099 5.70074 5.78319 5.84678 5.96877 5.97780 6.18618 6.21768 6.78840 6.85234 7.08665 7.61744 7.87678 7.99731 8.37568 8.78993 9.25886 10.88049 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014342 B = 0.002575 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.853238 B =10872.391351 C =11752.052957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.388 6.388 3 C 0.073 3.927 4 C -0.068 4.068 5 C 0.131 3.869 6 N -0.724 5.724 7 C 0.529 3.471 8 O -0.526 6.526 9 C -0.150 4.150 10 S -0.062 6.062 11 C -0.534 4.534 12 H 0.072 0.928 13 C 0.073 3.927 14 N -0.868 5.868 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.273 1.273 19 C -0.120 4.120 20 C 0.098 3.902 21 N -0.611 5.611 22 C 0.514 3.486 23 C -0.177 4.177 24 O -0.552 6.552 25 C 0.107 3.893 26 C -0.118 4.118 27 H 0.089 0.911 28 H 0.042 0.958 29 H 0.040 0.960 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.407 0.593 35 H 0.087 0.913 36 H 0.087 0.913 37 H 0.268 0.732 38 H 0.088 0.912 39 H 0.069 0.931 40 H 0.091 0.909 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.075 0.925 47 H 0.074 0.926 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.613 17.529 -18.921 25.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.307 6.307 3 C -0.004 4.004 4 C -0.069 4.069 5 C 0.007 3.993 6 N -0.384 5.384 7 C 0.314 3.686 8 O -0.402 6.402 9 C -0.300 4.300 10 S 0.165 5.835 11 C -0.682 4.682 12 H 0.090 0.910 13 C -0.136 4.136 14 N -0.503 5.503 15 Si 0.744 3.256 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C -0.158 4.158 20 C -0.024 4.024 21 N -0.345 5.345 22 C 0.303 3.697 23 C -0.236 4.236 24 O -0.430 6.430 25 C -0.015 4.015 26 C -0.157 4.157 27 H 0.108 0.892 28 H 0.061 0.939 29 H 0.058 0.942 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.087 0.913 34 H 0.248 0.752 35 H 0.105 0.895 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.109 0.891 41 H 0.097 0.903 42 H 0.111 0.889 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.114 0.886 46 H 0.094 0.906 47 H 0.092 0.908 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.973 18.435 -17.185 25.221 hybrid contribution -2.092 -1.427 -1.495 2.940 sum -3.065 17.008 -18.680 25.448 Atomic orbital electron populations 1.22761 0.80400 1.03239 0.99880 1.87591 1.20111 1.27620 1.95353 1.22565 0.92242 0.85034 1.00511 1.20885 0.93700 0.96152 0.96168 1.21300 0.98232 0.83799 0.95991 1.46215 1.51850 1.13717 1.26658 1.20279 0.80654 0.86234 0.81391 1.90689 1.36711 1.77472 1.35300 1.23490 1.03677 0.95736 1.07136 1.85385 1.64591 1.10941 1.22630 1.22872 1.34469 0.99549 1.11329 0.91001 1.24990 0.95372 0.98778 0.94488 1.70021 1.36750 1.33209 1.10358 0.86183 0.79609 0.82045 0.77736 1.20300 1.20798 1.19732 1.21910 0.94992 1.01935 0.96971 1.21955 0.93236 0.83702 1.03518 1.48168 1.40644 1.17291 1.28377 1.20812 0.78414 0.87368 0.83119 1.21979 1.04176 1.00300 0.97184 1.90706 1.55554 1.22079 1.74629 1.21645 0.93798 0.96704 0.89381 1.21852 0.95303 0.95047 1.03485 0.89234 0.93892 0.94176 0.92743 0.93019 0.91851 0.91317 0.75200 0.89456 0.89515 0.92237 0.89381 0.91182 0.89061 0.90260 0.88879 0.88907 0.89697 0.88600 0.90631 0.90759 0.89889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.39 -3.39 6.73 -35.23 -0.24 -3.63 16 3 C 0.07 0.54 4.80 37.16 0.18 0.71 16 4 C -0.07 -0.52 0.51 -154.47 -0.08 -0.60 16 5 C 0.13 1.47 3.81 -4.04 -0.02 1.45 16 6 N -0.72 -9.67 4.62 -60.30 -0.28 -9.95 16 7 C 0.53 9.89 7.85 -10.98 -0.09 9.80 16 8 O -0.53 -11.99 15.86 5.55 0.09 -11.90 16 9 C -0.15 -3.04 6.16 36.01 0.22 -2.82 16 10 S -0.06 -1.69 20.57 -107.50 -2.21 -3.90 16 11 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 12 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 13 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 14 N -0.87 -26.22 13.22 55.49 0.73 -25.48 16 15 Si 0.92 21.35 29.55 -169.99 -5.02 16.32 16 16 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 19 C -0.12 -0.83 4.59 -26.61 -0.12 -0.95 16 20 C 0.10 0.72 5.75 -3.71 -0.02 0.69 16 21 N -0.61 -5.32 2.97 -172.76 -0.51 -5.84 16 22 C 0.51 5.16 7.81 -10.98 -0.09 5.07 16 23 C -0.18 -1.10 9.46 36.01 0.34 -0.76 16 24 O -0.55 -7.78 16.51 5.56 0.09 -7.69 16 25 C 0.11 0.92 5.96 -3.71 -0.02 0.90 16 26 C -0.12 -0.80 4.91 -26.61 -0.13 -0.93 16 27 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.83 4.98 -51.93 -0.26 0.57 16 34 H 0.41 4.76 4.71 -40.82 -0.19 4.57 16 35 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 36 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 37 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 38 H 0.09 0.65 6.49 -51.93 -0.34 0.31 16 39 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.09 0.48 5.52 -51.93 -0.29 0.19 16 41 H 0.08 0.71 6.71 -51.93 -0.35 0.36 16 42 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 43 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 44 H 0.08 0.40 6.19 -51.93 -0.32 0.08 16 45 H 0.10 0.92 7.01 -51.93 -0.36 0.56 16 46 H 0.08 0.69 6.69 -51.93 -0.35 0.34 16 47 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 48 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 389.23 15.07 5.87 5.87 Total: -1.00 -36.89 389.23 -7.49 -44.39 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: -7.50 Total: 0.80 kcal Atomic # 6 Polarization: -0.49 SS G_CDS: 1.49 Total: 1.00 kcal Atomic # 7 Polarization: -41.21 SS G_CDS: -0.06 Total: -41.27 kcal Atomic # 8 Polarization: -23.15 SS G_CDS: -0.06 Total: -23.21 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: -1.69 SS G_CDS: -2.21 Total: -3.90 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.89 -7.49 -44.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718988469.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.865 kcal (2) G-P(sol) polarization free energy of solvation -36.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds