Wall clock time and date at job start Sat Apr 11 2020 07:12:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.42897 * 113.99487 * 2 1 4 4 C 1.53002 * 109.46716 * 179.97438 * 3 2 1 5 5 C 1.52996 * 109.46421 * 300.00496 * 4 3 2 6 6 N 1.46498 * 109.47059 * 60.02279 * 5 4 3 7 7 C 1.34777 * 119.99828 * 179.72339 * 6 5 4 8 8 O 1.21283 * 120.00222 * 0.28168 * 7 6 5 9 9 C 1.50703 * 120.00290 * 180.27728 * 7 6 5 10 10 S 1.81000 * 109.47389 * 180.02562 * 9 7 6 11 11 C 1.76198 * 99.99715 * 179.97438 * 10 9 7 12 12 H 1.08001 * 120.00516 * 0.02562 * 11 10 9 13 13 C 1.38803 * 119.99710 * 179.97438 * 11 10 9 14 14 N 1.31634 * 120.00163 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00011 * 179.97438 * 13 11 10 16 16 H 1.48507 * 109.46850 * 90.00589 * 15 13 11 17 17 H 1.48498 * 109.47329 * 210.00016 * 15 13 11 18 18 H 1.48499 * 109.47220 * 330.01003 * 15 13 11 19 19 C 1.53045 * 109.44446 * 59.96997 * 4 3 2 20 20 C 1.53195 * 109.31243 * 181.37446 * 19 4 3 21 21 N 1.46927 * 108.77585 * 305.37102 * 20 19 4 22 22 C 1.34781 * 120.62582 * 233.58856 * 21 20 19 23 23 C 1.50701 * 120.00225 * 0.02562 * 22 21 20 24 24 O 1.21281 * 120.00055 * 180.02562 * 22 21 20 25 25 C 1.46917 * 118.74482 * 53.60201 * 21 20 19 26 26 C 1.53040 * 109.45806 * 180.02562 * 4 3 2 27 27 H 1.09002 * 109.47131 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47168 * 299.99533 * 1 2 3 29 29 H 1.09000 * 109.47177 * 60.00131 * 1 2 3 30 30 H 1.09003 * 109.46931 * 60.00234 * 3 2 1 31 31 H 1.08993 * 109.47684 * 299.99601 * 3 2 1 32 32 H 1.09004 * 109.47066 * 300.02547 * 5 4 3 33 33 H 1.08994 * 109.46974 * 180.02562 * 5 4 3 34 34 H 0.97001 * 120.00384 * 0.02562 * 6 5 4 35 35 H 1.08998 * 109.46954 * 300.00581 * 9 7 6 36 36 H 1.09002 * 109.46946 * 59.99717 * 9 7 6 37 37 H 0.96991 * 119.99795 * 179.97438 * 14 13 11 38 38 H 1.09003 * 109.50062 * 301.32623 * 19 4 3 39 39 H 1.09004 * 109.49770 * 61.42748 * 19 4 3 40 40 H 1.08997 * 109.59189 * 185.57444 * 20 19 4 41 41 H 1.09004 * 109.70148 * 65.22372 * 20 19 4 42 42 H 1.09007 * 109.46828 * 90.00551 * 23 22 21 43 43 H 1.08998 * 109.47709 * 210.00482 * 23 22 21 44 44 H 1.09006 * 109.47084 * 330.00706 * 23 22 21 45 45 H 1.08999 * 109.59302 * 186.60736 * 25 21 20 46 46 H 1.09004 * 109.58702 * 66.17961 * 25 21 20 47 47 H 1.08993 * 109.50164 * 298.58401 * 26 4 3 48 48 H 1.08998 * 109.49635 * 58.65385 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 6 3.9862 0.4256 1.2502 6 7 3.3907 -0.9129 1.2497 7 6 3.6537 -1.7678 2.2579 8 8 4.3793 -1.4273 3.1681 9 6 3.0462 -3.1470 2.2544 10 16 3.5841 -4.0471 3.7296 11 6 2.7501 -5.5781 3.4749 12 1 2.1345 -5.7185 2.5987 13 6 2.8851 -6.6042 4.3999 14 7 3.6358 -6.4333 5.4676 15 14 2.0003 -8.2271 4.1302 16 1 2.8745 -9.1448 3.3562 17 1 1.6794 -8.8402 5.4441 18 1 0.7440 -7.9867 3.3759 19 6 3.9868 0.4243 -1.2485 20 6 5.5113 0.2751 -1.2275 21 7 6.1148 1.6067 -1.0806 22 6 7.0461 2.0386 -1.9539 23 6 7.4773 1.1535 -3.0948 24 8 7.5371 3.1397 -1.8216 25 6 5.6840 2.4582 0.0365 26 6 4.1575 2.5829 0.0013 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.6885 1.8463 0.8900 31 1 1.6886 1.8464 -0.8899 32 1 3.6637 0.9664 2.1400 33 1 5.0727 0.3399 1.2509 34 1 2.8106 -1.1855 0.5216 35 1 1.9593 -3.0652 2.2552 36 1 3.3693 -3.6840 1.3626 37 1 3.7298 -7.1502 6.1140 38 1 3.5248 -0.5629 -1.2602 39 1 3.6876 0.9772 -2.1389 40 1 5.8471 -0.1774 -2.1605 41 1 5.8074 -0.3548 -0.3887 42 1 6.8417 1.3409 -3.9604 43 1 8.5141 1.3707 -3.3516 44 1 7.3878 0.1085 -2.7978 45 1 6.1337 3.4462 -0.0626 46 1 5.9921 2.0072 0.9797 47 1 3.8567 3.1154 -0.9009 48 1 3.8167 3.1324 0.8788 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001718988469.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:27 Heat of formation + Delta-G solvation = -141.544173 kcal Electronic energy + Delta-G solvation = -29007.517970 eV Core-core repulsion = 24994.881621 eV Total energy + Delta-G solvation = -4012.636350 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.81455 -40.50474 -39.51341 -38.06193 -35.76994 -34.56470 -34.23378 -32.49231 -30.98603 -30.56229 -28.80221 -27.73668 -27.12770 -26.39708 -24.51962 -23.93061 -21.61171 -21.10985 -19.97213 -19.26485 -18.25579 -17.72185 -17.19889 -17.19079 -16.87724 -16.85128 -16.78224 -16.42414 -16.33138 -15.99825 -15.77593 -15.13895 -14.89811 -14.74486 -14.54535 -14.43837 -14.22351 -13.93643 -13.72032 -13.60247 -13.14145 -13.13323 -13.04566 -12.91844 -12.86986 -12.81767 -12.59031 -12.37052 -12.21251 -11.75223 -11.73182 -11.56536 -11.55564 -11.12185 -10.87617 -10.81137 -10.54899 -10.23529 -9.94893 -9.65517 -8.63571 -8.32385 -6.09968 1.30034 1.43824 1.49753 1.59532 1.60226 1.71995 2.01878 2.28357 2.35111 2.79778 3.01621 3.37236 3.51520 3.57143 3.72617 3.84696 4.02771 4.05974 4.15861 4.24836 4.28951 4.34914 4.43186 4.43465 4.51204 4.54385 4.55610 4.60100 4.65025 4.66414 4.68559 4.74054 4.81176 4.92077 4.95240 4.97966 4.98643 5.08242 5.17141 5.25938 5.43982 5.52342 5.61478 6.21872 6.22280 6.39509 6.73941 7.08850 7.13653 7.41017 8.76831 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.014342 B = 0.002575 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.853238 B =10872.391351 C =11752.052957 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.407 6.407 3 C 0.073 3.927 4 C -0.058 4.058 5 C 0.131 3.869 6 N -0.695 5.695 7 C 0.529 3.471 8 O -0.574 6.574 9 C -0.125 4.125 10 S -0.152 6.152 11 C -0.544 4.544 12 H 0.083 0.917 13 C 0.012 3.988 14 N -0.912 5.912 15 Si 0.999 3.001 16 H -0.268 1.268 17 H -0.279 1.279 18 H -0.257 1.257 19 C -0.116 4.116 20 C 0.096 3.904 21 N -0.608 5.608 22 C 0.505 3.495 23 C -0.171 4.171 24 O -0.601 6.601 25 C 0.103 3.897 26 C -0.108 4.108 27 H 0.089 0.911 28 H 0.039 0.961 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.052 0.948 33 H 0.059 0.941 34 H 0.419 0.581 35 H 0.104 0.896 36 H 0.107 0.893 37 H 0.270 0.730 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.118 0.882 41 H 0.060 0.940 42 H 0.115 0.885 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.082 0.918 46 H 0.064 0.936 47 H 0.088 0.912 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.613 17.059 -21.939 28.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.326 6.326 3 C -0.004 4.004 4 C -0.059 4.059 5 C 0.007 3.993 6 N -0.354 5.354 7 C 0.315 3.685 8 O -0.454 6.454 9 C -0.276 4.276 10 S 0.075 5.925 11 C -0.692 4.692 12 H 0.101 0.899 13 C -0.192 4.192 14 N -0.549 5.549 15 Si 0.820 3.180 16 H -0.193 1.193 17 H -0.204 1.204 18 H -0.181 1.181 19 C -0.154 4.154 20 C -0.025 4.025 21 N -0.340 5.340 22 C 0.296 3.704 23 C -0.230 4.230 24 O -0.483 6.483 25 C -0.020 4.020 26 C -0.146 4.146 27 H 0.107 0.893 28 H 0.058 0.942 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.093 0.907 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.263 0.737 35 H 0.122 0.878 36 H 0.125 0.875 37 H 0.079 0.921 38 H 0.107 0.893 39 H 0.108 0.892 40 H 0.136 0.864 41 H 0.079 0.921 42 H 0.133 0.867 43 H 0.109 0.891 44 H 0.121 0.879 45 H 0.101 0.899 46 H 0.082 0.918 47 H 0.107 0.893 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -3.017 17.971 -20.256 27.246 hybrid contribution -1.464 -1.170 -0.595 1.966 sum -4.480 16.801 -20.851 27.150 Atomic orbital electron populations 1.22848 0.79481 1.03536 1.00651 1.87505 1.21134 1.28458 1.95520 1.22613 0.91357 0.84774 1.01612 1.20824 0.94417 0.96048 0.94615 1.21437 0.97631 0.82573 0.97707 1.45998 1.50646 1.13680 1.25060 1.20058 0.80277 0.86253 0.81947 1.90679 1.39045 1.78182 1.37465 1.23325 1.04503 0.95959 1.03855 1.85578 1.66004 1.12909 1.28024 1.23202 1.34495 0.99683 1.11812 0.89935 1.26135 0.96056 1.03105 0.93936 1.70190 1.38477 1.34673 1.11550 0.84954 0.78658 0.76459 0.77904 1.19276 1.20432 1.18115 1.21907 0.94325 1.02061 0.97063 1.22071 0.93689 0.82648 1.04128 1.48264 1.40250 1.17686 1.27849 1.21543 0.77837 0.87165 0.83839 1.22007 1.04430 1.00284 0.96276 1.90682 1.57228 1.24359 1.76036 1.21626 0.95247 0.96028 0.89080 1.21783 0.93501 0.94683 1.04678 0.89251 0.94232 0.92311 0.92920 0.90672 0.93010 0.92272 0.73744 0.87795 0.87472 0.92060 0.89334 0.89230 0.86407 0.92135 0.86686 0.89064 0.87892 0.89923 0.91822 0.89324 0.88956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -5.96 6.73 -148.98 -1.00 -6.96 16 3 C 0.07 0.85 4.80 71.98 0.35 1.20 16 4 C -0.06 -0.76 0.51 -52.15 -0.03 -0.79 16 5 C 0.13 2.82 3.81 86.38 0.33 3.15 16 6 N -0.69 -17.72 4.62 -463.07 -2.14 -19.87 16 7 C 0.53 19.74 7.85 87.66 0.69 20.42 16 8 O -0.57 -26.93 15.86 -3.04 -0.05 -26.98 16 9 C -0.13 -5.01 6.16 71.24 0.44 -4.57 16 10 S -0.15 -8.50 20.57 -56.49 -1.16 -9.66 16 11 C -0.54 -31.02 9.50 67.96 0.65 -30.37 16 12 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 13 C 0.01 0.70 5.49 84.86 0.47 1.16 16 14 N -0.91 -56.18 13.22 21.65 0.29 -55.89 16 15 Si 1.00 43.35 29.55 68.60 2.03 45.38 16 16 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 17 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 18 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 19 C -0.12 -1.24 4.59 30.67 0.14 -1.09 16 20 C 0.10 1.20 5.75 86.36 0.50 1.69 16 21 N -0.61 -9.93 2.97 -818.89 -2.43 -12.36 16 22 C 0.51 9.71 7.81 87.66 0.68 10.39 16 23 C -0.17 -1.75 9.46 71.24 0.67 -1.07 16 24 O -0.60 -17.18 16.51 -3.03 -0.05 -17.23 16 25 C 0.10 1.75 5.96 86.37 0.52 2.27 16 26 C -0.11 -1.27 4.91 30.67 0.15 -1.12 16 27 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 28 H 0.04 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 1.27 8.14 -2.38 -0.02 1.26 16 33 H 0.06 1.44 4.98 -2.39 -0.01 1.43 16 34 H 0.42 8.83 4.71 -92.71 -0.44 8.40 16 35 H 0.10 3.81 8.14 -2.40 -0.02 3.79 16 36 H 0.11 3.84 8.14 -2.39 -0.02 3.82 16 37 H 0.27 15.45 8.31 -92.72 -0.77 14.68 16 38 H 0.09 1.00 6.49 -2.39 -0.02 0.98 16 39 H 0.09 0.70 8.14 -2.38 -0.02 0.68 16 40 H 0.12 0.84 5.52 -2.39 -0.01 0.82 16 41 H 0.06 1.01 6.71 -2.39 -0.02 1.00 16 42 H 0.11 0.70 8.14 -2.38 -0.02 0.68 16 43 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.10 0.66 6.19 -2.38 -0.01 0.65 16 45 H 0.08 1.65 7.01 -2.39 -0.02 1.63 16 46 H 0.06 1.22 6.69 -2.39 -0.02 1.20 16 47 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 48 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -83.57 389.23 2.80 -80.77 By element: Atomic # 1 Polarization: 19.40 SS G_CDS: 0.53 Total: 19.94 kcal Atomic # 6 Polarization: -3.92 SS G_CDS: 6.80 Total: 2.87 kcal Atomic # 7 Polarization: -83.83 SS G_CDS: -4.29 Total: -88.12 kcal Atomic # 8 Polarization: -50.07 SS G_CDS: -1.10 Total: -51.17 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -8.50 SS G_CDS: -1.16 Total: -9.66 kcal Total: -83.57 2.80 -80.77 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001718988469.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.778 kcal (2) G-P(sol) polarization free energy of solvation -83.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.349 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds