Wall clock time and date at job start Sat Apr 11 2020 07:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.46849 * 2 1 4 4 C 1.42897 * 114.00094 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47134 * 29.99785 * 4 3 2 6 6 C 1.53008 * 109.46963 * 270.00139 * 4 3 2 7 7 C 1.50695 * 109.46972 * 150.00212 * 4 3 2 8 8 O 1.21281 * 120.00648 * 8.54314 * 7 4 3 9 9 N 1.34780 * 119.99811 * 188.54828 * 7 4 3 10 10 C 1.46497 * 120.00141 * 5.06520 * 9 7 4 11 11 C 1.46494 * 120.00031 * 185.07008 * 9 7 4 12 12 C 1.53002 * 109.47286 * 95.98537 * 11 9 7 13 13 H 1.08998 * 112.96590 * 67.18585 * 12 11 9 14 14 C 1.53947 * 113.76877 * 295.50262 * 12 11 9 15 15 C 1.53943 * 86.28990 * 222.09412 * 14 12 11 16 16 N 1.47580 * 86.12122 * 23.60872 * 15 14 12 17 17 C 1.34768 * 134.49523 * 155.35920 * 16 15 14 18 18 O 1.21288 * 120.00109 * 184.97178 * 17 16 15 19 19 C 1.50700 * 120.00278 * 4.97247 * 17 16 15 20 20 S 1.80993 * 109.47585 * 180.02562 * 19 17 16 21 21 C 1.76194 * 100.00205 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00180 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00125 * 179.97438 * 21 20 19 24 24 N 1.31629 * 119.99728 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99940 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47249 * 59.99836 * 25 23 21 27 27 H 1.48497 * 109.47015 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47062 * 299.99622 * 25 23 21 29 29 H 1.09003 * 109.47465 * 60.00571 * 1 2 3 30 30 H 1.09011 * 109.46566 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47442 * 299.99596 * 1 2 3 32 32 H 1.09000 * 109.47442 * 240.00404 * 2 1 3 33 33 H 1.09004 * 109.47081 * 119.99806 * 2 1 3 34 34 H 1.09000 * 109.47195 * 54.91728 * 6 4 3 35 35 H 1.08998 * 109.46466 * 174.91559 * 6 4 3 36 36 H 1.08997 * 109.46780 * 294.91313 * 6 4 3 37 37 H 1.09004 * 109.46999 * 25.49429 * 10 9 7 38 38 H 1.08992 * 109.47292 * 145.49268 * 10 9 7 39 39 H 1.09003 * 109.47324 * 265.49699 * 10 9 7 40 40 H 1.09006 * 109.47439 * 215.98502 * 11 9 7 41 41 H 1.08999 * 109.47260 * 335.98456 * 11 9 7 42 42 H 1.08997 * 113.73980 * 336.43789 * 14 12 11 43 43 H 1.09004 * 113.73721 * 107.64207 * 14 12 11 44 44 H 1.09000 * 113.77091 * 137.91019 * 15 14 12 45 45 H 1.09006 * 113.76661 * 269.19316 * 15 14 12 46 46 H 1.09010 * 109.46810 * 299.99960 * 19 17 16 47 47 H 1.09001 * 109.47209 * 59.99491 * 19 17 16 48 48 H 0.97004 * 119.99718 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 0.0006 5 1 3.8636 0.6017 -0.5129 6 6 3.9386 1.5007 1.4434 7 6 3.8346 2.7265 -0.7098 8 8 2.9911 3.5353 -1.0341 9 7 5.1332 2.9600 -0.9848 10 6 6.1393 1.9357 -0.6940 11 6 5.5386 4.2383 -1.5745 12 6 6.0025 5.1866 -0.4670 13 1 6.9234 4.8590 0.0153 14 6 4.8892 5.5774 0.5219 15 6 5.4608 7.0048 0.4461 16 7 6.0096 6.6078 -0.8650 17 6 6.3718 7.2749 -1.9786 18 8 6.7196 6.6627 -2.9662 19 6 6.3448 8.7816 -1.9967 20 16 6.8805 9.3752 -3.6204 21 6 6.7558 11.1143 -3.3669 22 1 6.4244 11.4987 -2.4136 23 6 7.0835 11.9905 -4.3924 24 7 7.4878 11.5221 -5.5541 25 14 6.9519 13.8343 -4.1233 26 1 7.8460 14.2369 -3.0080 27 1 7.3562 14.5455 -5.3626 28 1 5.5494 14.1864 -3.7851 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.5704 0.6281 1.9828 35 1 5.0286 1.4958 1.4451 36 1 3.5786 2.4072 1.9299 37 1 5.6693 0.9522 -0.7019 38 1 6.9223 1.9702 -1.4514 39 1 6.5747 2.1224 0.2877 40 1 6.3560 4.0719 -2.2762 41 1 4.6925 4.6804 -2.1005 42 1 3.8842 5.4848 0.1102 43 1 4.9911 5.1136 1.5030 44 1 4.6978 7.7810 0.3862 45 1 6.2219 7.2138 1.1980 46 1 5.3306 9.1292 -1.7996 47 1 7.0163 9.1663 -1.2291 48 1 7.7165 12.1344 -6.2709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001719376517.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:33 Heat of formation + Delta-G solvation = -73.765661 kcal Electronic energy + Delta-G solvation = -28111.873677 eV Core-core repulsion = 24102.176424 eV Total energy + Delta-G solvation = -4009.697253 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.81165 -39.82058 -38.13662 -37.26866 -35.76874 -32.93039 -32.40421 -30.97347 -30.43766 -28.95990 -28.01587 -27.02672 -25.45562 -24.91345 -23.46196 -22.88897 -21.76642 -19.66463 -18.85932 -17.77252 -17.64541 -17.12932 -16.54631 -16.50178 -16.05450 -16.00227 -15.29811 -15.05814 -14.77843 -14.36037 -14.19717 -14.07174 -13.86036 -13.60300 -13.34205 -13.13740 -12.97650 -12.82867 -12.76061 -12.57652 -12.44794 -12.33018 -12.30440 -11.94780 -11.77821 -11.73896 -11.51307 -11.46193 -11.02344 -11.01663 -10.82695 -10.74142 -10.25865 -9.80416 -9.73324 -9.29426 -9.04487 -9.02921 -8.47342 -8.21287 -6.47294 -6.19011 -3.89431 2.26129 2.36865 2.85545 3.10813 3.25452 3.25871 3.30542 3.42059 3.62068 4.09998 4.22993 4.30817 4.33382 4.50319 4.66529 4.69666 4.73380 4.78766 4.80363 4.91096 4.92667 4.99805 5.04336 5.09671 5.15987 5.21401 5.24324 5.29973 5.34623 5.43963 5.48196 5.50541 5.57473 5.62586 5.66699 5.75970 5.84589 5.91885 6.03790 6.15633 6.19007 6.30425 6.67539 7.06907 7.61871 7.88356 7.93296 8.37692 8.58963 9.26033 10.88391 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023090 B = 0.001979 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.352190 B =14144.121965 C =14338.938059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 O -0.358 6.358 4 C 0.072 3.928 5 H 0.084 0.916 6 C -0.171 4.171 7 C 0.515 3.485 8 O -0.508 6.508 9 N -0.611 5.611 10 C 0.072 3.928 11 C 0.115 3.885 12 C 0.122 3.878 13 H 0.090 0.910 14 C -0.149 4.149 15 C 0.104 3.896 16 N -0.643 5.643 17 C 0.556 3.444 18 O -0.516 6.516 19 C -0.145 4.145 20 S -0.060 6.060 21 C -0.535 4.535 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.868 5.868 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.049 0.951 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.061 0.939 40 H 0.089 0.911 41 H 0.097 0.903 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.088 0.912 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.521 -26.042 18.397 32.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.011 3.989 5 H 0.101 0.899 6 C -0.229 4.229 7 C 0.301 3.699 8 O -0.382 6.382 9 N -0.347 5.347 10 C -0.071 4.071 11 C -0.008 4.008 12 C 0.017 3.983 13 H 0.107 0.893 14 C -0.186 4.186 15 C -0.019 4.019 16 N -0.383 5.383 17 C 0.346 3.654 18 O -0.390 6.390 19 C -0.296 4.296 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.136 4.136 24 N -0.503 5.503 25 Si 0.745 3.255 26 H -0.200 1.200 27 H -0.208 1.208 28 H -0.199 1.199 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.108 0.892 41 H 0.115 0.885 42 H 0.120 0.880 43 H 0.095 0.905 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.106 0.894 47 H 0.106 0.894 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.478 -26.182 16.348 31.539 hybrid contribution -0.051 1.652 1.404 2.168 sum -6.529 -24.531 17.752 30.976 Atomic orbital electron populations 1.21734 0.93305 1.02252 1.03572 1.22601 0.96104 0.83472 0.99999 1.88076 1.18262 1.26334 1.94927 1.21893 0.83808 0.96454 0.96775 0.89880 1.22264 1.01930 1.03934 0.94784 1.20384 0.82176 0.88128 0.79221 1.90747 1.49592 1.47232 1.50604 1.47686 1.06590 1.16724 1.63704 1.21968 0.92383 0.90873 1.01849 1.21621 1.02317 0.82234 0.94600 1.23065 0.97912 0.83184 0.94120 0.89251 1.23647 0.99981 0.95695 0.99318 1.23086 0.96890 0.97849 0.84102 1.50113 1.66725 1.07540 1.13901 1.20063 0.75078 0.89255 0.81038 1.90693 1.46288 1.69503 1.32514 1.23480 1.05174 0.93071 1.07855 1.85356 1.86509 1.04155 1.07302 1.22824 1.52446 0.91081 1.02002 0.91000 1.24992 0.94536 0.99614 0.94435 1.70012 1.41854 1.35490 1.02951 0.86221 0.78719 0.82812 0.77730 1.19960 1.20803 1.19916 0.91559 0.90997 0.91678 0.93278 0.93212 0.91190 0.90620 0.90995 0.90991 0.90469 0.92077 0.89229 0.88470 0.88009 0.90462 0.89836 0.89907 0.89384 0.89391 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 10.28 37.16 0.38 -0.56 16 2 C 0.05 0.37 6.47 37.16 0.24 0.61 16 3 O -0.36 -3.72 9.54 -54.99 -0.52 -4.25 16 4 C 0.07 0.59 2.33 -27.88 -0.06 0.52 16 5 H 0.08 0.47 6.42 -51.93 -0.33 0.13 16 6 C -0.17 -0.95 9.33 37.16 0.35 -0.60 16 7 C 0.51 5.89 6.56 -10.99 -0.07 5.82 16 8 O -0.51 -8.25 14.80 -14.21 -0.21 -8.46 16 9 N -0.61 -5.86 2.78 -181.58 -0.51 -6.37 16 10 C 0.07 0.38 9.12 59.85 0.55 0.92 16 11 C 0.12 1.46 4.90 -4.04 -0.02 1.44 16 12 C 0.12 1.44 4.54 -66.86 -0.30 1.14 16 13 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 14 C -0.15 -1.54 7.29 -25.81 -0.19 -1.73 16 15 C 0.10 1.15 8.61 -2.98 -0.03 1.13 16 16 N -0.64 -9.76 3.49 -171.17 -0.60 -10.36 16 17 C 0.56 11.16 7.99 -10.99 -0.09 11.07 16 18 O -0.52 -12.06 15.91 5.55 0.09 -11.98 16 19 C -0.15 -3.13 5.91 36.01 0.21 -2.91 16 20 S -0.06 -1.68 20.57 -107.50 -2.21 -3.89 16 21 C -0.54 -15.61 9.50 30.94 0.29 -15.31 16 22 H 0.07 1.98 7.80 -52.49 -0.41 1.58 16 23 C 0.07 2.14 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.57 13.22 55.49 0.73 -25.84 16 25 Si 0.92 21.79 29.55 -169.99 -5.02 16.76 16 26 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 27 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 28 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.30 8.14 -51.92 -0.42 -0.13 16 31 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.29 8.09 -51.93 -0.42 -0.13 16 33 H 0.05 0.24 7.78 -51.93 -0.40 -0.16 16 34 H 0.07 0.30 7.78 -51.93 -0.40 -0.10 16 35 H 0.08 0.28 6.01 -51.93 -0.31 -0.03 16 36 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.24 6.03 -51.93 -0.31 -0.08 16 38 H 0.08 0.39 8.01 -51.93 -0.42 -0.03 16 39 H 0.06 0.22 7.37 -51.93 -0.38 -0.16 16 40 H 0.09 1.19 7.98 -51.93 -0.41 0.77 16 41 H 0.10 1.59 7.20 -51.93 -0.37 1.22 16 42 H 0.10 1.31 6.86 -51.93 -0.36 0.96 16 43 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 45 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.09 1.80 8.14 -51.91 -0.42 1.37 16 47 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 48 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 406.55 15.07 6.13 6.13 Total: -1.00 -38.38 406.55 -8.86 -47.24 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -7.90 Total: -2.58 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: 1.16 Total: 3.58 kcal Atomic # 7 Polarization: -42.20 SS G_CDS: -0.37 Total: -42.57 kcal Atomic # 8 Polarization: -24.04 SS G_CDS: -0.65 Total: -24.68 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.76 kcal Atomic # 16 Polarization: -1.68 SS G_CDS: -2.21 Total: -3.89 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -38.38 -8.86 -47.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719376517.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.522 kcal (2) G-P(sol) polarization free energy of solvation -38.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds