Wall clock time and date at job start Sat Apr 11 2020 07:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.46849 * 2 1 4 4 C 1.42897 * 114.00094 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47134 * 29.99785 * 4 3 2 6 6 C 1.53008 * 109.46963 * 270.00139 * 4 3 2 7 7 C 1.50695 * 109.46972 * 150.00212 * 4 3 2 8 8 O 1.21281 * 120.00648 * 8.54314 * 7 4 3 9 9 N 1.34780 * 119.99811 * 188.54828 * 7 4 3 10 10 C 1.46497 * 120.00141 * 5.06520 * 9 7 4 11 11 C 1.46494 * 120.00031 * 185.07008 * 9 7 4 12 12 C 1.53002 * 109.47286 * 95.98537 * 11 9 7 13 13 H 1.08998 * 112.96590 * 67.18585 * 12 11 9 14 14 C 1.53947 * 113.76877 * 295.50262 * 12 11 9 15 15 C 1.53943 * 86.28990 * 222.09412 * 14 12 11 16 16 N 1.47580 * 86.12122 * 23.60872 * 15 14 12 17 17 C 1.34768 * 134.49523 * 155.35920 * 16 15 14 18 18 O 1.21288 * 120.00109 * 184.97178 * 17 16 15 19 19 C 1.50700 * 120.00278 * 4.97247 * 17 16 15 20 20 S 1.80993 * 109.47585 * 180.02562 * 19 17 16 21 21 C 1.76194 * 100.00205 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00180 * 359.97438 * 21 20 19 23 23 C 1.38806 * 120.00125 * 179.97438 * 21 20 19 24 24 N 1.31629 * 119.99728 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99940 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47249 * 59.99836 * 25 23 21 27 27 H 1.48497 * 109.47015 * 179.97438 * 25 23 21 28 28 H 1.48505 * 109.47062 * 299.99622 * 25 23 21 29 29 H 1.09003 * 109.47465 * 60.00571 * 1 2 3 30 30 H 1.09011 * 109.46566 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47442 * 299.99596 * 1 2 3 32 32 H 1.09000 * 109.47442 * 240.00404 * 2 1 3 33 33 H 1.09004 * 109.47081 * 119.99806 * 2 1 3 34 34 H 1.09000 * 109.47195 * 54.91728 * 6 4 3 35 35 H 1.08998 * 109.46466 * 174.91559 * 6 4 3 36 36 H 1.08997 * 109.46780 * 294.91313 * 6 4 3 37 37 H 1.09004 * 109.46999 * 25.49429 * 10 9 7 38 38 H 1.08992 * 109.47292 * 145.49268 * 10 9 7 39 39 H 1.09003 * 109.47324 * 265.49699 * 10 9 7 40 40 H 1.09006 * 109.47439 * 215.98502 * 11 9 7 41 41 H 1.08999 * 109.47260 * 335.98456 * 11 9 7 42 42 H 1.08997 * 113.73980 * 336.43789 * 14 12 11 43 43 H 1.09004 * 113.73721 * 107.64207 * 14 12 11 44 44 H 1.09000 * 113.77091 * 137.91019 * 15 14 12 45 45 H 1.09006 * 113.76661 * 269.19316 * 15 14 12 46 46 H 1.09010 * 109.46810 * 299.99960 * 19 17 16 47 47 H 1.09001 * 109.47209 * 59.99491 * 19 17 16 48 48 H 0.97004 * 119.99718 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 0.0006 5 1 3.8636 0.6017 -0.5129 6 6 3.9386 1.5007 1.4434 7 6 3.8346 2.7265 -0.7098 8 8 2.9911 3.5353 -1.0341 9 7 5.1332 2.9600 -0.9848 10 6 6.1393 1.9357 -0.6940 11 6 5.5386 4.2383 -1.5745 12 6 6.0025 5.1866 -0.4670 13 1 6.9234 4.8590 0.0153 14 6 4.8892 5.5774 0.5219 15 6 5.4608 7.0048 0.4461 16 7 6.0096 6.6078 -0.8650 17 6 6.3718 7.2749 -1.9786 18 8 6.7196 6.6627 -2.9662 19 6 6.3448 8.7816 -1.9967 20 16 6.8805 9.3752 -3.6204 21 6 6.7558 11.1143 -3.3669 22 1 6.4244 11.4987 -2.4136 23 6 7.0835 11.9905 -4.3924 24 7 7.4878 11.5221 -5.5541 25 14 6.9519 13.8343 -4.1233 26 1 7.8460 14.2369 -3.0080 27 1 7.3562 14.5455 -5.3626 28 1 5.5494 14.1864 -3.7851 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.5704 0.6281 1.9828 35 1 5.0286 1.4958 1.4451 36 1 3.5786 2.4072 1.9299 37 1 5.6693 0.9522 -0.7019 38 1 6.9223 1.9702 -1.4514 39 1 6.5747 2.1224 0.2877 40 1 6.3560 4.0719 -2.2762 41 1 4.6925 4.6804 -2.1005 42 1 3.8842 5.4848 0.1102 43 1 4.9911 5.1136 1.5030 44 1 4.6978 7.7810 0.3862 45 1 6.2219 7.2138 1.1980 46 1 5.3306 9.1292 -1.7996 47 1 7.0163 9.1663 -1.2291 48 1 7.7165 12.1344 -6.2709 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001719376517.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:32 Heat of formation + Delta-G solvation = -100.550391 kcal Electronic energy + Delta-G solvation = -28113.035150 eV Core-core repulsion = 24102.176424 eV Total energy + Delta-G solvation = -4010.858726 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.78106 -40.85887 -39.00007 -38.52486 -36.65203 -34.61459 -33.52135 -32.20916 -31.23577 -29.78762 -29.42921 -27.71029 -27.61224 -25.63125 -24.18868 -23.50182 -22.93310 -20.45391 -20.27207 -19.48673 -18.46632 -18.08490 -17.74798 -17.37622 -17.12552 -16.90324 -16.64473 -16.41518 -16.27696 -15.74738 -15.51460 -15.07211 -14.63969 -14.60879 -14.28615 -14.15025 -13.97471 -13.78722 -13.67521 -13.39996 -13.29482 -13.20473 -13.17543 -13.10930 -12.89374 -12.85861 -12.74377 -12.64792 -12.44898 -12.25521 -12.01094 -11.78817 -11.76900 -11.15454 -10.95921 -10.81694 -10.44873 -10.33349 -9.98893 -9.58334 -8.71017 -8.37046 -6.16207 1.14994 1.37410 1.42263 1.48370 1.51367 1.56898 1.64017 2.05958 2.25192 2.84578 2.96682 3.17597 3.36623 3.47850 3.63030 3.79079 3.84568 4.00913 4.02132 4.04418 4.20251 4.20914 4.27975 4.34043 4.36943 4.40929 4.48680 4.49447 4.56408 4.60719 4.68132 4.75176 4.81831 4.85431 4.86187 4.96059 4.98496 5.02577 5.25793 5.26817 5.28105 5.38246 5.40249 6.09411 6.16783 6.36969 6.57002 7.03457 7.08036 7.12230 8.72103 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.023090 B = 0.001979 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1212.352190 B =14144.121965 C =14338.938059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.396 6.396 4 C 0.074 3.926 5 H 0.113 0.887 6 C -0.165 4.165 7 C 0.507 3.493 8 O -0.570 6.570 9 N -0.603 5.603 10 C 0.062 3.938 11 C 0.122 3.878 12 C 0.123 3.877 13 H 0.125 0.875 14 C -0.132 4.132 15 C 0.102 3.898 16 N -0.645 5.645 17 C 0.552 3.448 18 O -0.563 6.563 19 C -0.120 4.120 20 S -0.148 6.148 21 C -0.549 4.549 22 H 0.081 0.919 23 C 0.013 3.987 24 N -0.910 5.910 25 Si 1.000 3.000 26 H -0.260 1.260 27 H -0.277 1.277 28 H -0.263 1.263 29 H 0.045 0.955 30 H 0.095 0.905 31 H 0.058 0.942 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.054 0.946 37 H 0.097 0.903 38 H 0.078 0.922 39 H 0.089 0.911 40 H 0.078 0.922 41 H 0.049 0.951 42 H 0.071 0.929 43 H 0.117 0.883 44 H 0.084 0.916 45 H 0.120 0.880 46 H 0.097 0.903 47 H 0.107 0.893 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.828 -27.247 22.134 35.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.315 6.315 4 C 0.013 3.987 5 H 0.130 0.870 6 C -0.222 4.222 7 C 0.296 3.704 8 O -0.448 6.448 9 N -0.338 5.338 10 C -0.079 4.079 11 C -0.003 4.003 12 C 0.020 3.980 13 H 0.143 0.857 14 C -0.170 4.170 15 C -0.019 4.019 16 N -0.383 5.383 17 C 0.341 3.659 18 O -0.442 6.442 19 C -0.271 4.271 20 S 0.080 5.920 21 C -0.697 4.697 22 H 0.099 0.901 23 C -0.191 4.191 24 N -0.547 5.547 25 Si 0.822 3.178 26 H -0.185 1.185 27 H -0.202 1.202 28 H -0.188 1.188 29 H 0.065 0.935 30 H 0.114 0.886 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.119 0.881 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.097 0.903 39 H 0.108 0.892 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.135 0.865 44 H 0.102 0.898 45 H 0.138 0.862 46 H 0.115 0.885 47 H 0.125 0.875 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.774 -27.448 20.161 34.542 hybrid contribution -0.317 1.861 0.316 1.914 sum -6.091 -25.586 20.477 33.333 Atomic orbital electron populations 1.21780 0.93543 1.03401 1.02272 1.22815 0.96064 0.82256 1.01589 1.88042 1.19697 1.28597 1.95210 1.22056 0.83236 0.95088 0.98298 0.86976 1.22264 1.03395 1.03963 0.92572 1.21200 0.81939 0.88779 0.78530 1.90721 1.51365 1.49492 1.53249 1.47731 1.07183 1.16309 1.62533 1.22349 0.91589 0.90609 1.03393 1.21290 0.99858 0.84148 0.94974 1.23417 0.99922 0.80964 0.93747 0.85731 1.23471 0.97721 0.95400 1.00403 1.23488 0.97722 0.98334 0.82339 1.50215 1.64586 1.09588 1.13892 1.19763 0.75469 0.88625 0.82061 1.90665 1.48924 1.70002 1.34601 1.23280 1.05629 0.94590 1.03603 1.85518 1.87413 1.05527 1.13582 1.23159 1.52737 0.91125 1.02666 0.90072 1.26162 0.93654 1.05470 0.93863 1.70180 1.42836 1.37577 1.04079 0.84981 0.79315 0.75409 0.78137 1.18459 1.20155 1.18789 0.93548 0.88602 0.92286 0.92433 0.90663 0.89361 0.88118 0.92657 0.88469 0.90305 0.89215 0.90333 0.93241 0.90991 0.86504 0.89775 0.86242 0.88457 0.87523 0.91906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.81 10.28 71.98 0.74 -1.07 16 2 C 0.05 0.57 6.47 71.98 0.47 1.04 16 3 O -0.40 -7.97 9.54 -130.08 -1.24 -9.21 16 4 C 0.07 1.05 2.33 29.85 0.07 1.12 16 5 H 0.11 0.88 6.42 -2.39 -0.02 0.87 16 6 C -0.16 -1.25 9.33 71.98 0.67 -0.58 16 7 C 0.51 11.48 6.56 87.66 0.57 12.06 16 8 O -0.57 -19.66 14.80 15.86 0.23 -19.43 16 9 N -0.60 -10.96 2.78 -846.77 -2.36 -13.31 16 10 C 0.06 0.44 9.12 127.77 1.17 1.61 16 11 C 0.12 3.18 4.90 86.38 0.42 3.60 16 12 C 0.12 2.72 4.54 45.09 0.20 2.92 16 13 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 14 C -0.13 -2.47 7.29 31.25 0.23 -2.24 16 15 C 0.10 2.01 8.61 86.48 0.74 2.76 16 16 N -0.65 -19.12 3.49 -813.85 -2.84 -21.96 16 17 C 0.55 22.67 7.99 87.66 0.70 23.37 16 18 O -0.56 -27.75 15.91 -3.05 -0.05 -27.80 16 19 C -0.12 -5.23 5.91 71.24 0.42 -4.81 16 20 S -0.15 -8.59 20.57 -56.49 -1.16 -9.76 16 21 C -0.55 -32.52 9.50 67.96 0.65 -31.87 16 22 H 0.08 4.47 7.80 -2.91 -0.02 4.45 16 23 C 0.01 0.78 5.49 84.86 0.47 1.25 16 24 N -0.91 -57.21 13.22 21.65 0.29 -56.92 16 25 Si 1.00 44.66 29.55 68.60 2.03 46.69 16 26 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 27 H -0.28 -11.95 7.11 99.48 0.71 -11.25 16 28 H -0.26 -11.22 7.11 99.48 0.71 -10.51 16 29 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 0.56 8.09 -2.39 -0.02 0.54 16 33 H 0.08 0.49 7.78 -2.39 -0.02 0.47 16 34 H 0.09 0.38 7.78 -2.39 -0.02 0.36 16 35 H 0.10 0.23 6.01 -2.39 -0.01 0.22 16 36 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.10 0.23 6.03 -2.38 -0.01 0.22 16 38 H 0.08 0.59 8.01 -2.39 -0.02 0.57 16 39 H 0.09 0.20 7.37 -2.39 -0.02 0.18 16 40 H 0.08 2.19 7.98 -2.38 -0.02 2.17 16 41 H 0.05 1.77 7.20 -2.39 -0.02 1.76 16 42 H 0.07 1.87 6.86 -2.39 -0.02 1.85 16 43 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 44 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.12 1.60 8.14 -2.38 -0.02 1.58 16 46 H 0.10 4.01 8.14 -2.39 -0.02 3.99 16 47 H 0.11 4.20 8.14 -2.39 -0.02 4.18 16 48 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 Total: -1.00 -91.85 406.55 3.37 -88.48 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: 0.94 Total: 14.07 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: 7.52 Total: 9.16 kcal Atomic # 7 Polarization: -87.28 SS G_CDS: -4.91 Total: -92.19 kcal Atomic # 8 Polarization: -55.39 SS G_CDS: -1.05 Total: -56.44 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.69 kcal Atomic # 16 Polarization: -8.59 SS G_CDS: -1.16 Total: -9.76 kcal Total: -91.85 3.37 -88.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719376517.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.071 kcal (2) G-P(sol) polarization free energy of solvation -91.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds