Wall clock time and date at job start Sat Apr 11 2020 07:12:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.46808 * 2 1 4 4 C 1.42897 * 113.99889 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47515 * 329.99907 * 4 3 2 6 6 C 1.52998 * 109.47355 * 89.99990 * 4 3 2 7 7 C 1.50706 * 109.47386 * 210.00017 * 4 3 2 8 8 O 1.21277 * 119.99431 * 352.27432 * 7 4 3 9 9 N 1.34779 * 119.99993 * 172.27513 * 7 4 3 10 10 C 1.46492 * 120.00322 * 355.17100 * 9 7 4 11 11 C 1.46502 * 119.99454 * 175.17371 * 9 7 4 12 12 C 1.52997 * 109.47188 * 275.29419 * 11 9 7 13 13 H 1.09007 * 112.95827 * 67.15799 * 12 11 9 14 14 C 1.53944 * 113.77106 * 295.48408 * 12 11 9 15 15 C 1.53954 * 86.28851 * 222.08799 * 14 12 11 16 16 N 1.47579 * 113.77105 * 198.98260 * 12 11 9 17 17 C 1.34773 * 134.49241 * 318.94706 * 16 12 11 18 18 O 1.21282 * 120.00068 * 5.13024 * 17 16 12 19 19 C 1.50699 * 120.00009 * 185.13250 * 17 16 12 20 20 S 1.80996 * 109.47251 * 180.02562 * 19 17 16 21 21 C 1.76205 * 100.00171 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99695 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00120 * 179.97438 * 21 20 19 24 24 N 1.31625 * 120.00207 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00060 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46945 * 59.99929 * 25 23 21 27 27 H 1.48493 * 109.47108 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46872 * 300.00202 * 25 23 21 29 29 H 1.09005 * 109.47177 * 60.00455 * 1 2 3 30 30 H 1.09005 * 109.47053 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47174 * 299.99771 * 1 2 3 32 32 H 1.09001 * 109.47244 * 240.00314 * 2 1 3 33 33 H 1.09000 * 109.47094 * 120.00269 * 2 1 3 34 34 H 1.09004 * 109.47254 * 55.45141 * 6 4 3 35 35 H 1.08998 * 109.47868 * 175.45044 * 6 4 3 36 36 H 1.09001 * 109.47083 * 295.45100 * 6 4 3 37 37 H 1.09000 * 109.47014 * 89.99796 * 10 9 7 38 38 H 1.09000 * 109.47262 * 330.00765 * 10 9 7 39 39 H 1.08993 * 109.47338 * 210.00042 * 10 9 7 40 40 H 1.08996 * 109.47237 * 35.29937 * 11 9 7 41 41 H 1.09005 * 109.46896 * 155.29765 * 11 9 7 42 42 H 1.08999 * 113.73838 * 336.42869 * 14 12 11 43 43 H 1.08999 * 113.74086 * 107.63878 * 14 12 11 44 44 H 1.08995 * 113.76480 * 137.90397 * 15 14 12 45 45 H 1.08999 * 113.76735 * 269.19513 * 15 14 12 46 46 H 1.09004 * 109.47251 * 300.00298 * 19 17 16 47 47 H 1.08999 * 109.47249 * 59.99643 * 19 17 16 48 48 H 0.96999 * 120.00451 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8635 0.6016 0.5129 6 6 3.9386 1.5007 -1.4432 7 6 3.8347 2.7264 0.7099 8 8 2.9897 3.5282 1.0473 9 7 5.1349 2.9676 0.9701 10 6 6.1449 1.9533 0.6584 11 6 5.5382 4.2444 1.5648 12 6 5.7100 5.2896 0.4608 13 1 4.7704 5.5536 -0.0247 14 6 6.8491 4.9701 -0.5243 15 6 7.2040 6.4660 -0.4431 16 7 6.5212 6.4542 0.8652 17 6 6.6049 7.2052 1.9811 18 8 5.9662 6.9009 2.9662 19 6 7.4921 8.4232 2.0049 20 16 7.3902 9.2122 3.6307 21 6 8.4916 10.5652 3.3837 22 1 8.9860 10.6922 2.4319 23 6 8.7238 11.4677 4.4123 24 7 8.1217 11.3126 5.5724 25 14 9.8921 12.9017 4.1507 26 1 9.3951 13.7480 3.0362 27 1 9.9670 13.7120 5.3928 28 1 11.2431 12.3846 3.8153 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.4445 2.3107 -1.9798 35 1 5.0157 1.6678 -1.4449 36 1 3.7174 0.5524 -1.9331 37 1 6.5088 2.1033 -0.3581 38 1 5.7015 0.9611 0.7427 39 1 6.9757 2.0407 1.3584 40 1 4.7717 4.5775 2.2644 41 1 6.4825 4.1164 2.0941 42 1 7.6155 4.3143 -0.1111 43 1 6.5027 4.6523 -1.5076 44 1 8.2745 6.6606 -0.3782 45 1 6.7054 7.0772 -1.1954 46 1 8.5225 8.1260 1.8096 47 1 7.1652 9.1258 1.2385 48 1 8.2836 11.9436 6.2912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001719376519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:39 Heat of formation + Delta-G solvation = -73.515205 kcal Electronic energy + Delta-G solvation = -27978.310895 eV Core-core repulsion = 23968.624503 eV Total energy + Delta-G solvation = -4009.686392 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.78816 -39.87544 -38.12658 -37.32828 -35.73418 -32.92550 -32.41717 -30.97463 -30.43470 -29.06907 -28.01223 -27.01325 -25.46749 -24.90461 -23.45183 -22.86288 -21.93234 -19.73066 -18.79409 -17.74838 -17.60520 -17.23165 -16.61088 -16.39316 -16.05502 -15.96096 -15.33696 -15.05401 -14.79095 -14.45257 -14.19105 -14.11482 -13.85274 -13.55114 -13.35443 -13.15853 -12.98222 -12.90491 -12.76954 -12.59251 -12.47809 -12.39712 -12.33196 -11.92871 -11.78640 -11.71609 -11.59279 -11.46201 -11.03875 -11.02976 -10.89080 -10.75440 -10.25661 -9.81626 -9.72249 -9.29610 -9.05139 -9.03532 -8.50043 -8.21978 -6.48604 -6.19938 -3.90761 2.26667 2.38026 2.83714 3.10658 3.24083 3.24711 3.29558 3.42415 3.60679 4.11000 4.21177 4.22053 4.33263 4.51242 4.67022 4.67615 4.68970 4.74450 4.80688 4.89220 4.93818 4.96031 5.00508 5.11000 5.14914 5.19057 5.23603 5.28487 5.34953 5.36317 5.47126 5.50237 5.51616 5.57391 5.65729 5.77003 5.87410 5.89671 5.96948 6.01574 6.16189 6.30693 6.68520 7.07314 7.60381 7.86327 7.94576 8.36320 8.58651 9.24887 10.87420 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026735 B = 0.001934 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.072729 B =14474.283941 C =15053.306295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.358 6.358 4 C 0.073 3.927 5 H 0.084 0.916 6 C -0.173 4.173 7 C 0.512 3.488 8 O -0.508 6.508 9 N -0.611 5.611 10 C 0.073 3.927 11 C 0.119 3.881 12 C 0.123 3.877 13 H 0.092 0.908 14 C -0.147 4.147 15 C 0.104 3.896 16 N -0.646 5.646 17 C 0.554 3.446 18 O -0.511 6.511 19 C -0.145 4.145 20 S -0.060 6.060 21 C -0.536 4.536 22 H 0.072 0.928 23 C 0.074 3.926 24 N -0.867 5.867 25 Si 0.919 3.081 26 H -0.274 1.274 27 H -0.283 1.283 28 H -0.274 1.274 29 H 0.064 0.936 30 H 0.071 0.929 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.068 0.932 37 H 0.062 0.938 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.083 0.917 46 H 0.087 0.913 47 H 0.088 0.912 48 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.631 -26.517 -18.490 32.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.276 6.276 4 C 0.012 3.988 5 H 0.102 0.898 6 C -0.231 4.231 7 C 0.298 3.702 8 O -0.380 6.380 9 N -0.347 5.347 10 C -0.070 4.070 11 C -0.004 4.004 12 C 0.018 3.982 13 H 0.110 0.890 14 C -0.185 4.185 15 C -0.019 4.019 16 N -0.386 5.386 17 C 0.343 3.657 18 O -0.385 6.385 19 C -0.295 4.295 20 S 0.167 5.833 21 C -0.684 4.684 22 H 0.090 0.910 23 C -0.135 4.135 24 N -0.502 5.502 25 Si 0.745 3.255 26 H -0.199 1.199 27 H -0.208 1.208 28 H -0.200 1.200 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.091 0.909 35 H 0.095 0.905 36 H 0.087 0.913 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.096 0.904 40 H 0.114 0.886 41 H 0.106 0.894 42 H 0.110 0.890 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.101 0.899 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -6.198 -26.162 -16.431 31.509 hybrid contribution 1.766 1.109 -1.395 2.509 sum -4.433 -25.053 -17.826 31.065 Atomic orbital electron populations 1.21733 0.93323 1.02243 1.03578 1.22596 0.96107 0.83463 0.99989 1.88080 1.18289 1.26342 1.94923 1.21885 0.83804 0.96397 0.96760 0.89817 1.22292 1.02220 1.03724 0.94846 1.20433 0.82185 0.88121 0.79458 1.90773 1.49583 1.47657 1.50036 1.47703 1.06295 1.17113 1.63621 1.22000 0.92318 0.91132 1.01550 1.21581 1.02561 0.81369 0.94861 1.23071 0.95820 0.85360 0.93904 0.88975 1.23597 0.98382 0.96764 0.99729 1.23074 0.98871 0.95545 0.84426 1.50182 1.42117 1.32436 1.13845 1.20086 0.81945 0.82532 0.81120 1.90719 1.45080 1.69857 1.32819 1.23478 1.00991 0.97133 1.07937 1.85413 1.60762 1.30091 1.07032 1.22820 1.30823 1.12779 1.02006 0.91015 1.24988 0.96282 0.97843 0.94435 1.70006 1.40917 1.36397 1.02929 0.86224 0.80524 0.80987 0.77758 1.19941 1.20793 1.19955 0.91693 0.90996 0.91546 0.93219 0.93272 0.90907 0.90493 0.91280 0.91987 0.91139 0.90432 0.88607 0.89425 0.89008 0.90062 0.89803 0.89873 0.89463 0.89395 0.92120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.59 16 2 C 0.06 0.38 6.47 37.16 0.24 0.62 16 3 O -0.36 -3.85 9.53 -55.02 -0.52 -4.38 16 4 C 0.07 0.61 2.35 -27.88 -0.07 0.55 16 5 H 0.08 0.48 6.48 -51.93 -0.34 0.14 16 6 C -0.17 -0.98 9.39 37.16 0.35 -0.63 16 7 C 0.51 6.11 7.00 -10.98 -0.08 6.03 16 8 O -0.51 -8.78 16.16 -14.23 -0.23 -9.01 16 9 N -0.61 -5.88 2.77 -181.58 -0.50 -6.39 16 10 C 0.07 0.36 8.73 59.84 0.52 0.88 16 11 C 0.12 1.52 4.76 -4.04 -0.02 1.50 16 12 C 0.12 1.51 4.51 -66.87 -0.30 1.21 16 13 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 14 C -0.15 -1.16 7.33 -25.80 -0.19 -1.34 16 15 C 0.10 1.03 8.61 -2.97 -0.03 1.00 16 16 N -0.65 -9.52 3.49 -171.17 -0.60 -10.12 16 17 C 0.55 11.03 7.99 -10.99 -0.09 10.94 16 18 O -0.51 -12.18 15.91 5.56 0.09 -12.09 16 19 C -0.14 -3.06 5.91 36.00 0.21 -2.85 16 20 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 21 C -0.54 -15.50 9.50 30.94 0.29 -15.21 16 22 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 23 C 0.07 2.13 5.49 -17.43 -0.10 2.04 16 24 N -0.87 -26.49 13.22 55.49 0.73 -25.75 16 25 Si 0.92 21.61 29.55 -169.99 -5.02 16.59 16 26 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 28 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.25 7.98 -51.93 -0.41 -0.17 16 33 H 0.05 0.29 8.09 -51.93 -0.42 -0.13 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.08 0.30 5.64 -51.93 -0.29 0.01 16 36 H 0.07 0.28 7.98 -51.93 -0.41 -0.13 16 37 H 0.06 0.20 6.92 -51.93 -0.36 -0.16 16 38 H 0.07 0.23 6.27 -51.93 -0.33 -0.10 16 39 H 0.08 0.35 7.86 -51.93 -0.41 -0.06 16 40 H 0.10 1.62 7.48 -51.93 -0.39 1.23 16 41 H 0.09 1.08 7.83 -51.93 -0.41 0.68 16 42 H 0.09 0.63 8.04 -51.93 -0.42 0.21 16 43 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.09 1.69 8.14 -51.91 -0.42 1.27 16 47 H 0.09 1.76 8.14 -51.92 -0.42 1.33 16 48 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 408.95 15.07 6.16 6.16 Total: -1.00 -39.14 408.95 -8.92 -48.06 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -7.96 Total: -3.34 kcal Atomic # 6 Polarization: 3.00 SS G_CDS: 1.14 Total: 4.14 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -0.37 Total: -42.26 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -0.67 Total: -25.48 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -39.14 -8.92 -48.06 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719376519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.453 kcal (2) G-P(sol) polarization free energy of solvation -39.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.062 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds