Wall clock time and date at job start Sat Apr 11 2020 07:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.46808 * 2 1 4 4 C 1.42897 * 113.99889 * 180.02562 * 3 2 1 5 5 H 1.08998 * 109.47515 * 329.99907 * 4 3 2 6 6 C 1.52998 * 109.47355 * 89.99990 * 4 3 2 7 7 C 1.50706 * 109.47386 * 210.00017 * 4 3 2 8 8 O 1.21277 * 119.99431 * 352.27432 * 7 4 3 9 9 N 1.34779 * 119.99993 * 172.27513 * 7 4 3 10 10 C 1.46492 * 120.00322 * 355.17100 * 9 7 4 11 11 C 1.46502 * 119.99454 * 175.17371 * 9 7 4 12 12 C 1.52997 * 109.47188 * 275.29419 * 11 9 7 13 13 H 1.09007 * 112.95827 * 67.15799 * 12 11 9 14 14 C 1.53944 * 113.77106 * 295.48408 * 12 11 9 15 15 C 1.53954 * 86.28851 * 222.08799 * 14 12 11 16 16 N 1.47579 * 113.77105 * 198.98260 * 12 11 9 17 17 C 1.34773 * 134.49241 * 318.94706 * 16 12 11 18 18 O 1.21282 * 120.00068 * 5.13024 * 17 16 12 19 19 C 1.50699 * 120.00009 * 185.13250 * 17 16 12 20 20 S 1.80996 * 109.47251 * 180.02562 * 19 17 16 21 21 C 1.76205 * 100.00171 * 179.97438 * 20 19 17 22 22 H 1.08004 * 119.99695 * 359.97438 * 21 20 19 23 23 C 1.38795 * 120.00120 * 179.97438 * 21 20 19 24 24 N 1.31625 * 120.00207 * 0.02562 * 23 21 20 25 25 Si 1.86805 * 120.00060 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46945 * 59.99929 * 25 23 21 27 27 H 1.48493 * 109.47108 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.46872 * 300.00202 * 25 23 21 29 29 H 1.09005 * 109.47177 * 60.00455 * 1 2 3 30 30 H 1.09005 * 109.47053 * 179.97438 * 1 2 3 31 31 H 1.08992 * 109.47174 * 299.99771 * 1 2 3 32 32 H 1.09001 * 109.47244 * 240.00314 * 2 1 3 33 33 H 1.09000 * 109.47094 * 120.00269 * 2 1 3 34 34 H 1.09004 * 109.47254 * 55.45141 * 6 4 3 35 35 H 1.08998 * 109.47868 * 175.45044 * 6 4 3 36 36 H 1.09001 * 109.47083 * 295.45100 * 6 4 3 37 37 H 1.09000 * 109.47014 * 89.99796 * 10 9 7 38 38 H 1.09000 * 109.47262 * 330.00765 * 10 9 7 39 39 H 1.08993 * 109.47338 * 210.00042 * 10 9 7 40 40 H 1.08996 * 109.47237 * 35.29937 * 11 9 7 41 41 H 1.09005 * 109.46896 * 155.29765 * 11 9 7 42 42 H 1.08999 * 113.73838 * 336.42869 * 14 12 11 43 43 H 1.08999 * 113.74086 * 107.63878 * 14 12 11 44 44 H 1.08995 * 113.76480 * 137.90397 * 15 14 12 45 45 H 1.08999 * 113.76735 * 269.19513 * 15 14 12 46 46 H 1.09004 * 109.47251 * 300.00298 * 19 17 16 47 47 H 1.08999 * 109.47249 * 59.99643 * 19 17 16 48 48 H 0.96999 * 120.00451 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 1 3.8635 0.6016 0.5129 6 6 3.9386 1.5007 -1.4432 7 6 3.8347 2.7264 0.7099 8 8 2.9897 3.5282 1.0473 9 7 5.1349 2.9676 0.9701 10 6 6.1449 1.9533 0.6584 11 6 5.5382 4.2444 1.5648 12 6 5.7100 5.2896 0.4608 13 1 4.7704 5.5536 -0.0247 14 6 6.8491 4.9701 -0.5243 15 6 7.2040 6.4660 -0.4431 16 7 6.5212 6.4542 0.8652 17 6 6.6049 7.2052 1.9811 18 8 5.9662 6.9009 2.9662 19 6 7.4921 8.4232 2.0049 20 16 7.3902 9.2122 3.6307 21 6 8.4916 10.5652 3.3837 22 1 8.9860 10.6922 2.4319 23 6 8.7238 11.4677 4.4123 24 7 8.1217 11.3126 5.5724 25 14 9.8921 12.9017 4.1507 26 1 9.3951 13.7480 3.0362 27 1 9.9670 13.7120 5.3928 28 1 11.2431 12.3846 3.8153 29 1 -0.3634 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.4445 2.3107 -1.9798 35 1 5.0157 1.6678 -1.4449 36 1 3.7174 0.5524 -1.9331 37 1 6.5088 2.1033 -0.3581 38 1 5.7015 0.9611 0.7427 39 1 6.9757 2.0407 1.3584 40 1 4.7717 4.5775 2.2644 41 1 6.4825 4.1164 2.0941 42 1 7.6155 4.3143 -0.1111 43 1 6.5027 4.6523 -1.5076 44 1 8.2745 6.6606 -0.3782 45 1 6.7054 7.0772 -1.1954 46 1 8.5225 8.1260 1.8096 47 1 7.1652 9.1258 1.2385 48 1 8.2836 11.9436 6.2912 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001719376519.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:38 Heat of formation + Delta-G solvation = -101.529852 kcal Electronic energy + Delta-G solvation = -27979.525702 eV Core-core repulsion = 23968.624503 eV Total energy + Delta-G solvation = -4010.901198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.75500 -40.90311 -39.01178 -38.57623 -36.65224 -34.60967 -33.53351 -32.20103 -31.24557 -29.84270 -29.38080 -27.67028 -27.62923 -25.61807 -24.15072 -23.47226 -23.01507 -20.59802 -20.17914 -19.43807 -18.38899 -18.13318 -17.89587 -17.24803 -17.11468 -16.89782 -16.64909 -16.43827 -16.21390 -15.82863 -15.54922 -14.99344 -14.67202 -14.62580 -14.29458 -14.17123 -13.97288 -13.81034 -13.68856 -13.39917 -13.34234 -13.24234 -13.16842 -13.12477 -12.88102 -12.85445 -12.65209 -12.56300 -12.39365 -12.26135 -12.03486 -11.82962 -11.77021 -11.14753 -10.98231 -10.81351 -10.46713 -10.31547 -9.97959 -9.61720 -8.71165 -8.36197 -6.15985 1.15299 1.37911 1.43028 1.47143 1.51280 1.56610 1.63774 2.07268 2.25856 2.84343 2.97632 3.19087 3.37254 3.44918 3.65670 3.81909 3.85849 3.93482 4.02409 4.08771 4.19986 4.22135 4.26921 4.33191 4.41687 4.42983 4.48431 4.52908 4.57031 4.62424 4.72522 4.78373 4.80729 4.86164 4.90172 4.94233 4.98307 5.02132 5.24332 5.26056 5.27418 5.38754 5.41206 6.08590 6.17383 6.36131 6.59172 7.04158 7.07235 7.11685 8.72962 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026735 B = 0.001934 C = 0.001860 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1047.072729 B =14474.283941 C =15053.306295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.049 3.951 3 O -0.399 6.399 4 C 0.075 3.925 5 H 0.117 0.883 6 C -0.166 4.166 7 C 0.502 3.498 8 O -0.580 6.580 9 N -0.601 5.601 10 C 0.060 3.940 11 C 0.127 3.873 12 C 0.114 3.886 13 H 0.076 0.924 14 C -0.115 4.115 15 C 0.097 3.903 16 N -0.645 5.645 17 C 0.548 3.452 18 O -0.567 6.567 19 C -0.116 4.116 20 S -0.155 6.155 21 C -0.547 4.547 22 H 0.083 0.917 23 C 0.013 3.987 24 N -0.912 5.912 25 Si 1.001 2.999 26 H -0.262 1.262 27 H -0.278 1.278 28 H -0.259 1.259 29 H 0.057 0.943 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.076 0.924 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.038 0.962 41 H 0.091 0.909 42 H 0.113 0.887 43 H 0.118 0.882 44 H 0.102 0.898 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.101 0.899 48 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.739 -28.608 -22.363 36.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.027 4.027 3 O -0.318 6.318 4 C 0.015 3.985 5 H 0.134 0.866 6 C -0.223 4.223 7 C 0.291 3.709 8 O -0.458 6.458 9 N -0.335 5.335 10 C -0.081 4.081 11 C 0.003 3.997 12 C 0.010 3.990 13 H 0.094 0.906 14 C -0.153 4.153 15 C -0.024 4.024 16 N -0.383 5.383 17 C 0.338 3.662 18 O -0.446 6.446 19 C -0.268 4.268 20 S 0.073 5.927 21 C -0.695 4.695 22 H 0.102 0.898 23 C -0.192 4.192 24 N -0.548 5.548 25 Si 0.822 3.178 26 H -0.187 1.187 27 H -0.203 1.203 28 H -0.184 1.184 29 H 0.076 0.924 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.120 0.880 36 H 0.111 0.889 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.103 0.897 40 H 0.057 0.943 41 H 0.109 0.891 42 H 0.131 0.869 43 H 0.137 0.863 44 H 0.120 0.880 45 H 0.118 0.882 46 H 0.127 0.873 47 H 0.119 0.881 48 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -3.253 -28.323 -20.391 35.051 hybrid contribution 0.806 1.618 -0.269 1.828 sum -2.446 -26.705 -20.661 33.853 Atomic orbital electron populations 1.21784 0.93620 1.03436 1.02206 1.22819 0.96037 0.82177 1.01674 1.88047 1.19840 1.28737 1.95220 1.22066 0.83194 0.94918 0.98356 0.86609 1.22292 1.03334 1.04258 0.92409 1.21355 0.82086 0.88807 0.78688 1.90740 1.51682 1.50249 1.53133 1.47760 1.06829 1.16727 1.62200 1.22438 0.91398 0.90670 1.03549 1.21254 1.00556 0.83387 0.94533 1.23276 0.96835 0.84203 0.94677 0.90643 1.23552 0.96002 0.95774 0.99931 1.23543 0.99793 0.97392 0.81649 1.50332 1.42231 1.31684 1.14046 1.19898 0.81482 0.82659 0.82210 1.90698 1.47244 1.71232 1.35403 1.23261 1.02780 0.97503 1.03215 1.85644 1.61677 1.31836 1.13576 1.23159 1.30769 1.12852 1.02704 0.89848 1.26178 0.98097 1.01091 0.93848 1.70186 1.42752 1.37790 1.04107 0.84967 0.78140 0.76643 0.78002 1.18692 1.20345 1.18356 0.92373 0.88483 0.93622 0.90544 0.92326 0.92983 0.88013 0.88895 0.88748 0.88752 0.89711 0.94350 0.89092 0.86850 0.86348 0.87976 0.88165 0.87263 0.88072 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 10.28 71.98 0.74 -1.17 16 2 C 0.05 0.60 6.47 71.98 0.47 1.07 16 3 O -0.40 -8.48 9.53 -130.06 -1.24 -9.72 16 4 C 0.08 1.13 2.35 29.85 0.07 1.20 16 5 H 0.12 0.92 6.48 -2.39 -0.02 0.91 16 6 C -0.17 -1.30 9.39 71.98 0.68 -0.63 16 7 C 0.50 12.14 7.00 87.66 0.61 12.75 16 8 O -0.58 -21.86 16.16 15.90 0.26 -21.60 16 9 N -0.60 -10.99 2.77 -846.78 -2.34 -13.34 16 10 C 0.06 0.35 8.73 127.77 1.12 1.47 16 11 C 0.13 3.36 4.76 86.38 0.41 3.77 16 12 C 0.11 2.73 4.51 45.09 0.20 2.94 16 13 H 0.08 2.09 8.14 -2.38 -0.02 2.07 16 14 C -0.12 -1.31 7.33 31.26 0.23 -1.08 16 15 C 0.10 1.57 8.61 86.48 0.75 2.31 16 16 N -0.65 -18.58 3.49 -813.84 -2.84 -21.42 16 17 C 0.55 22.48 7.99 87.66 0.70 23.18 16 18 O -0.57 -28.99 15.91 -3.04 -0.05 -29.04 16 19 C -0.12 -4.95 5.91 71.24 0.42 -4.53 16 20 S -0.15 -8.97 20.57 -56.49 -1.16 -10.13 16 21 C -0.55 -32.02 9.50 67.95 0.65 -31.38 16 22 H 0.08 4.50 7.80 -2.91 -0.02 4.48 16 23 C 0.01 0.73 5.49 84.86 0.47 1.19 16 24 N -0.91 -57.30 13.22 21.65 0.29 -57.01 16 25 Si 1.00 44.17 29.55 68.60 2.03 46.20 16 26 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 28 H -0.26 -10.72 7.11 99.48 0.71 -10.02 16 29 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 0.52 7.98 -2.39 -0.02 0.50 16 33 H 0.06 0.59 8.09 -2.39 -0.02 0.57 16 34 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 35 H 0.10 0.25 5.64 -2.39 -0.01 0.24 16 36 H 0.09 0.33 7.98 -2.39 -0.02 0.31 16 37 H 0.09 0.02 6.92 -2.39 -0.02 0.00 16 38 H 0.09 0.16 6.27 -2.39 -0.01 0.14 16 39 H 0.08 0.45 7.86 -2.39 -0.02 0.43 16 40 H 0.04 1.46 7.48 -2.39 -0.02 1.44 16 41 H 0.09 2.29 7.83 -2.38 -0.02 2.27 16 42 H 0.11 0.90 8.04 -2.39 -0.02 0.88 16 43 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 44 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.10 1.35 8.14 -2.39 -0.02 1.34 16 46 H 0.11 4.11 8.14 -2.39 -0.02 4.09 16 47 H 0.10 4.00 8.14 -2.40 -0.02 3.98 16 48 H 0.27 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -96.50 408.95 3.38 -93.12 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.94 Total: 11.87 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: 7.50 Total: 11.09 kcal Atomic # 7 Polarization: -86.88 SS G_CDS: -4.90 Total: -91.78 kcal Atomic # 8 Polarization: -59.33 SS G_CDS: -1.03 Total: -60.37 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 16 Polarization: -8.97 SS G_CDS: -1.16 Total: -10.13 kcal Total: -96.50 3.38 -93.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001719376519.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.413 kcal (2) G-P(sol) polarization free energy of solvation -96.499 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds