Wall clock time and date at job start Sat Apr 11 2020 07:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42900 * 109.47178 * 2 1 4 4 C 1.42903 * 114.00381 * 184.91962 * 3 2 1 5 5 H 1.09005 * 109.46576 * 17.10539 * 4 3 2 6 6 C 1.50694 * 109.47295 * 137.10603 * 4 3 2 7 7 O 1.21273 * 120.00513 * 6.58009 * 6 4 3 8 8 N 1.34788 * 119.99541 * 186.58122 * 6 4 3 9 9 C 1.47064 * 136.05743 * 4.08474 * 8 6 4 10 10 C 1.53756 * 87.88545 * 152.96150 * 9 8 6 11 11 N 1.46508 * 114.08519 * 139.77434 * 10 9 8 12 12 C 1.34780 * 119.99494 * 111.56423 * 11 10 9 13 13 O 1.21279 * 120.00163 * 359.97438 * 12 11 10 14 14 C 1.50699 * 119.99835 * 180.02562 * 12 11 10 15 15 S 1.81003 * 109.47021 * 180.02562 * 14 12 11 16 16 C 1.76196 * 99.99673 * 179.97438 * 15 14 12 17 17 H 1.07999 * 120.00341 * 359.97438 * 16 15 14 18 18 C 1.38802 * 119.99983 * 179.97438 * 16 15 14 19 19 N 1.31630 * 119.99740 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 120.00419 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.47183 * 59.99467 * 20 18 16 22 22 H 1.48496 * 109.47426 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.46966 * 300.00197 * 20 18 16 24 24 C 1.47064 * 136.05380 * 184.45197 * 8 6 4 25 25 C 1.53004 * 109.46736 * 257.10952 * 4 3 2 26 26 C 1.52996 * 109.47055 * 304.49734 * 25 4 3 27 27 C 1.52995 * 109.47256 * 64.50379 * 25 4 3 28 28 H 1.08997 * 109.46823 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.46675 * 300.00195 * 1 2 3 30 30 H 1.08999 * 109.47245 * 59.99918 * 1 2 3 31 31 H 1.08999 * 109.47245 * 120.00082 * 2 1 3 32 32 H 1.09005 * 109.47046 * 240.00173 * 2 1 3 33 33 H 1.09000 * 113.46441 * 267.69411 * 9 8 6 34 34 H 1.08994 * 113.46748 * 38.13674 * 9 8 6 35 35 H 1.09000 * 114.57646 * 272.66576 * 10 9 8 36 36 H 0.96997 * 119.99997 * 291.56261 * 11 10 9 37 37 H 1.09007 * 109.46899 * 299.99866 * 14 12 11 38 38 H 1.08995 * 109.47041 * 59.99839 * 14 12 11 39 39 H 0.97006 * 119.99983 * 179.97438 * 19 18 16 40 40 H 1.08999 * 113.47172 * 321.87110 * 24 8 6 41 41 H 1.09009 * 113.46620 * 92.30650 * 24 8 6 42 42 H 1.09004 * 109.46377 * 184.50021 * 25 4 3 43 43 H 1.08998 * 109.46759 * 64.31004 * 26 25 4 44 44 H 1.08998 * 109.47127 * 184.30451 * 26 25 4 45 45 H 1.09000 * 109.47389 * 304.30702 * 26 25 4 46 46 H 1.08999 * 109.47627 * 57.08505 * 27 25 4 47 47 H 1.08999 * 109.47149 * 177.09352 * 27 25 4 48 48 H 1.09008 * 109.46943 * 297.08686 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4264 1.4618 -0.1120 5 1 3.8391 0.5208 -0.4759 6 6 3.7666 2.5668 -1.0785 7 8 2.8880 3.2724 -1.5266 8 7 5.0476 2.7709 -1.4448 9 6 6.3384 2.1123 -1.1942 10 6 6.8199 2.6690 -2.5441 11 7 8.2025 3.1538 -2.5321 12 6 9.1534 2.4952 -3.2238 13 8 8.8648 1.5011 -3.8557 14 6 10.5756 2.9934 -3.2109 15 16 11.6055 1.9047 -4.2261 16 6 13.1672 2.6987 -4.0385 17 1 13.2516 3.5877 -3.4312 18 6 14.2891 2.1814 -4.6713 19 7 14.1863 1.0976 -5.4111 20 14 15.9450 3.0226 -4.4720 21 1 16.3205 3.0423 -3.0354 22 1 16.9740 2.2787 -5.2420 23 1 15.8569 4.4154 -4.9796 24 6 5.7703 3.7539 -2.2659 25 6 4.0218 1.7831 1.2604 26 6 3.3602 3.0436 1.8208 27 6 3.7733 0.6107 2.2113 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 6.8759 2.5221 -0.3391 34 1 6.2733 1.0246 -1.1700 35 1 6.5925 2.0367 -3.4024 36 1 8.4333 3.9486 -2.0263 37 1 10.6097 4.0055 -3.6145 38 1 10.9499 2.9976 -2.1873 39 1 14.9703 0.7363 -5.8537 40 1 5.2212 4.0647 -3.1547 41 1 6.1581 4.5965 -1.6933 42 1 5.0945 1.9493 1.1610 43 1 2.3009 2.8525 1.9920 44 1 3.8369 3.3161 2.7624 45 1 3.4715 3.8603 1.1075 46 1 4.2000 -0.2982 1.7871 47 1 4.2420 0.8175 3.1734 48 1 2.7005 0.4774 2.3512 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721327012.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:53 Heat of formation + Delta-G solvation = -86.156021 kcal Electronic energy + Delta-G solvation = -27639.971506 eV Core-core repulsion = 23629.736967 eV Total energy + Delta-G solvation = -4010.234539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.10813 -39.70191 -38.59660 -37.46442 -35.26281 -33.79920 -32.47153 -31.56144 -30.35691 -28.84809 -27.59750 -26.97938 -26.14212 -25.51836 -23.15482 -22.41783 -20.95795 -20.66140 -19.44652 -17.90441 -17.47700 -17.38609 -16.92389 -16.47743 -16.35348 -16.00254 -15.06209 -14.97955 -14.84268 -14.72957 -14.50451 -14.04901 -13.80360 -13.63944 -13.38828 -13.25091 -13.07015 -12.82453 -12.70880 -12.57142 -12.53877 -12.49290 -12.38770 -12.07183 -11.81604 -11.57367 -11.39961 -11.31806 -11.11707 -11.09349 -11.07102 -10.81259 -10.36004 -9.88117 -9.70976 -9.51525 -9.17453 -9.09935 -9.03622 -8.30628 -6.55791 -6.25948 -3.97268 2.12215 2.28465 2.87519 2.96751 3.20549 3.24138 3.26655 3.34044 3.63678 3.93039 4.13382 4.16216 4.24504 4.37746 4.49841 4.62569 4.68840 4.75254 4.79029 4.89912 4.96522 5.00795 5.03987 5.09412 5.11248 5.16151 5.23710 5.27720 5.30480 5.38924 5.43549 5.50790 5.51288 5.52717 5.64406 5.75920 5.79004 5.81008 5.82263 5.99194 6.05933 6.40126 6.69912 7.30028 7.51378 7.55320 7.84136 8.30511 8.43333 9.19425 10.81347 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.024728 B = 0.001747 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.052123 B =16021.408686 C =16059.291928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.351 6.351 4 C 0.085 3.915 5 H 0.087 0.913 6 C 0.546 3.454 7 O -0.517 6.517 8 N -0.644 5.644 9 C 0.079 3.921 10 C 0.119 3.881 11 N -0.726 5.726 12 C 0.536 3.464 13 O -0.512 6.512 14 C -0.155 4.155 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.274 1.274 22 H -0.283 1.283 23 H -0.274 1.274 24 C 0.096 3.904 25 C -0.106 4.106 26 C -0.141 4.141 27 C -0.149 4.149 28 H 0.071 0.929 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.085 0.915 35 H 0.133 0.867 36 H 0.402 0.598 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.269 0.731 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.066 0.934 44 H 0.055 0.945 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.062 0.938 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.400 1.112 15.847 27.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.027 4.027 3 O -0.269 6.269 4 C 0.023 3.977 5 H 0.105 0.895 6 C 0.334 3.666 7 O -0.390 6.390 8 N -0.383 5.383 9 C -0.045 4.045 10 C 0.011 3.989 11 N -0.380 5.380 12 C 0.323 3.677 13 O -0.385 6.385 14 C -0.305 4.305 15 S 0.168 5.832 16 C -0.686 4.686 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.199 1.199 24 C -0.027 4.027 25 C -0.125 4.125 26 C -0.199 4.199 27 C -0.206 4.206 28 H 0.090 0.910 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.073 0.927 32 H 0.068 0.932 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.151 0.849 36 H 0.237 0.763 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.101 0.899 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.082 0.918 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -23.659 -0.199 14.497 27.748 hybrid contribution 1.778 1.850 1.156 2.814 sum -21.881 1.651 15.653 26.954 Atomic orbital electron populations 1.21729 0.93380 1.02270 1.03387 1.22753 0.96040 0.83507 1.00367 1.88025 1.18490 1.26419 1.93996 1.21897 0.84037 0.97354 0.94408 0.89550 1.20084 0.79928 0.85517 0.81045 1.90734 1.45627 1.48137 1.54548 1.49252 1.04995 1.32110 1.51945 1.23755 0.81675 0.99961 0.99143 1.22687 0.81245 0.96528 0.98392 1.45843 1.07122 1.31779 1.53293 1.20402 0.86695 0.83100 0.77528 1.90717 1.81984 1.24809 1.41001 1.23544 0.94693 1.05868 1.06411 1.85413 1.01664 1.34924 1.61241 1.22819 0.93859 1.15384 1.36495 0.90920 1.24991 0.99108 0.94977 0.94451 1.70003 1.30662 1.20208 1.29364 0.86222 0.81527 0.79321 0.78421 1.19937 1.20801 1.19919 1.23359 0.90633 0.93330 0.95380 1.21514 1.00208 0.97406 0.93339 1.21719 1.01553 0.96132 1.00469 1.21906 1.02431 0.97030 0.99264 0.90987 0.91777 0.91649 0.92727 0.93223 0.89016 0.89628 0.84897 0.76282 0.88995 0.89010 0.92082 0.89443 0.89232 0.89922 0.91528 0.92546 0.92826 0.92525 0.91848 0.91846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 10.28 37.16 0.38 -0.59 16 2 C 0.05 0.37 6.10 37.16 0.23 0.59 16 3 O -0.35 -3.65 8.47 -55.05 -0.47 -4.12 16 4 C 0.08 0.78 2.20 -27.88 -0.06 0.72 16 5 H 0.09 0.66 7.60 -51.93 -0.39 0.26 16 6 C 0.55 6.48 6.30 -10.98 -0.07 6.41 16 7 O -0.52 -8.28 17.29 -14.26 -0.25 -8.53 16 8 N -0.64 -6.24 3.64 -185.07 -0.67 -6.91 16 9 C 0.08 0.62 7.24 -8.37 -0.06 0.56 16 10 C 0.12 1.15 4.63 -67.67 -0.31 0.84 16 11 N -0.73 -7.76 5.39 -53.48 -0.29 -8.05 16 12 C 0.54 8.77 7.85 -10.98 -0.09 8.69 16 13 O -0.51 -10.51 15.45 5.56 0.09 -10.43 16 14 C -0.15 -2.83 6.16 36.01 0.22 -2.61 16 15 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 16 C -0.54 -14.78 9.50 30.94 0.29 -14.49 16 17 H 0.07 1.88 7.80 -52.49 -0.41 1.47 16 18 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 19 N -0.87 -25.54 13.22 55.49 0.73 -24.81 16 20 Si 0.92 20.85 29.55 -169.99 -5.02 15.83 16 21 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 22 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 C 0.10 0.83 8.38 -8.50 -0.07 0.76 16 25 C -0.11 -0.78 2.74 -90.62 -0.25 -1.03 16 26 C -0.14 -1.18 8.81 37.16 0.33 -0.85 16 27 C -0.15 -0.87 8.28 37.16 0.31 -0.56 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.05 0.32 6.16 -51.93 -0.32 0.00 16 32 H 0.05 0.35 8.02 -51.93 -0.42 -0.07 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.13 1.56 7.45 -51.93 -0.39 1.18 16 36 H 0.40 3.05 8.75 -40.82 -0.36 2.69 16 37 H 0.09 1.55 8.14 -51.91 -0.42 1.13 16 38 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 39 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.39 16 41 H 0.09 0.60 8.13 -51.92 -0.42 0.18 16 42 H 0.08 0.55 7.08 -51.93 -0.37 0.18 16 43 H 0.07 0.60 7.72 -51.93 -0.40 0.20 16 44 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 45 H 0.05 0.54 7.23 -51.93 -0.38 0.17 16 46 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 47 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 48 H 0.06 0.39 6.51 -51.92 -0.34 0.05 16 LS Contribution 409.18 15.07 6.17 6.17 Total: -1.00 -36.24 409.18 -9.15 -45.39 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -7.97 Total: -1.20 kcal Atomic # 6 Polarization: -0.35 SS G_CDS: 0.75 Total: 0.40 kcal Atomic # 7 Polarization: -39.54 SS G_CDS: -0.23 Total: -39.77 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -0.63 Total: -23.07 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -36.24 -9.15 -45.39 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721327012.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.768 kcal (2) G-P(sol) polarization free energy of solvation -36.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds