Wall clock time and date at job start Sat Apr 11 2020 07:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42894 * 109.47028 * 2 1 4 4 C 1.42908 * 113.99900 * 174.87334 * 3 2 1 5 5 H 1.09008 * 109.46547 * 341.83846 * 4 3 2 6 6 C 1.50698 * 109.46956 * 221.84105 * 4 3 2 7 7 O 1.21284 * 120.00121 * 350.97041 * 6 4 3 8 8 N 1.34775 * 119.99847 * 170.97284 * 6 4 3 9 9 C 1.47061 * 136.05833 * 4.39100 * 8 6 4 10 10 C 1.53760 * 87.88732 * 152.96679 * 9 8 6 11 11 N 1.46500 * 114.08300 * 139.78267 * 10 9 8 12 12 C 1.34779 * 120.00322 * 111.56496 * 11 10 9 13 13 O 1.21282 * 119.99263 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00179 * 179.97438 * 12 11 10 15 15 S 1.81003 * 109.46765 * 179.97438 * 14 12 11 16 16 C 1.76200 * 99.99795 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99993 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00159 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99717 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00150 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46854 * 90.00061 * 20 18 16 22 22 H 1.48499 * 109.47225 * 210.00566 * 20 18 16 23 23 H 1.48501 * 109.46829 * 330.00308 * 20 18 16 24 24 C 1.47070 * 136.05716 * 184.77077 * 8 6 4 25 25 C 1.52995 * 109.47422 * 101.83726 * 4 3 2 26 26 C 1.53001 * 109.47496 * 294.16961 * 25 4 3 27 27 C 1.53003 * 109.47171 * 54.16521 * 25 4 3 28 28 H 1.09001 * 109.46903 * 59.99817 * 1 2 3 29 29 H 1.09003 * 109.47224 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46895 * 300.00354 * 1 2 3 31 31 H 1.08991 * 109.46953 * 120.00221 * 2 1 3 32 32 H 1.09000 * 109.46680 * 240.00094 * 2 1 3 33 33 H 1.09003 * 113.46991 * 267.69560 * 9 8 6 34 34 H 1.09003 * 113.46803 * 38.14319 * 9 8 6 35 35 H 1.08999 * 114.39247 * 272.67437 * 10 9 8 36 36 H 0.97007 * 120.00143 * 291.55824 * 11 10 9 37 37 H 1.08999 * 109.46996 * 299.99641 * 14 12 11 38 38 H 1.08997 * 109.47010 * 59.99992 * 14 12 11 39 39 H 0.97004 * 120.00215 * 179.97438 * 19 18 16 40 40 H 1.09007 * 113.46482 * 321.86113 * 24 8 6 41 41 H 1.08995 * 113.46805 * 92.29607 * 24 8 6 42 42 H 1.09000 * 109.47234 * 174.16437 * 25 4 3 43 43 H 1.09002 * 109.47362 * 66.52039 * 26 25 4 44 44 H 1.08989 * 109.47621 * 186.52736 * 26 25 4 45 45 H 1.09003 * 109.46784 * 306.52791 * 26 25 4 46 46 H 1.09010 * 109.46886 * 59.99946 * 27 25 4 47 47 H 1.08995 * 109.47470 * 179.97438 * 27 25 4 48 48 H 1.09005 * 109.47215 * 300.00497 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4260 1.4618 0.1167 5 1 3.8355 0.5275 0.5009 6 6 3.7632 2.5849 1.0632 7 8 2.8898 3.3279 1.4583 8 7 5.0354 2.7638 1.4706 9 6 6.3393 2.1540 1.1695 10 6 6.9904 3.4924 1.5558 11 7 8.2296 3.3544 2.3249 12 6 9.4079 3.7063 1.7732 13 8 9.4423 4.1368 0.6399 14 6 10.6826 3.5648 2.5646 15 16 12.0823 4.1145 1.5571 16 6 13.4013 3.8477 2.6945 17 1 13.1946 3.4521 3.6780 18 6 14.7061 4.1449 2.3261 19 7 14.9580 4.6265 1.1274 20 14 16.1046 3.8613 3.5317 21 1 16.6334 2.4842 3.3612 22 1 17.1881 4.8433 3.2728 23 1 15.6039 4.0311 4.9194 24 6 5.7296 3.6502 2.4169 25 6 4.0288 1.7555 -1.2586 26 6 3.8121 0.5519 -2.1780 27 6 3.3486 2.9864 -1.8612 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 6.6006 1.3349 1.8396 34 1 6.4654 1.8958 0.1181 35 1 7.0657 4.2089 0.7379 36 1 8.2022 3.0097 3.2313 37 1 10.6207 4.1756 3.4653 38 1 10.8236 2.5204 2.8427 39 1 15.8699 4.8345 0.8700 40 1 5.3360 4.6666 2.4281 41 1 5.8300 3.2255 3.4156 42 1 5.0970 1.9453 -1.1541 43 1 2.7468 0.4327 -2.3757 44 1 4.3403 0.7127 -3.1177 45 1 4.1949 -0.3475 -1.6954 46 1 3.5029 3.8440 -1.2062 47 1 3.7783 3.1959 -2.8407 48 1 2.2803 2.7966 -1.9657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001721327013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:56 Heat of formation + Delta-G solvation = -85.109148 kcal Electronic energy + Delta-G solvation = -27700.695017 eV Core-core repulsion = 23690.505873 eV Total energy + Delta-G solvation = -4010.189143 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.11675 -39.69276 -38.59606 -37.47041 -35.21938 -33.79883 -32.47335 -31.57625 -30.36256 -28.84609 -27.53220 -26.97330 -26.14521 -25.51971 -23.16831 -22.37039 -20.99054 -20.65930 -19.44255 -17.91171 -17.50917 -17.33846 -16.89025 -16.55503 -16.21224 -16.08359 -15.14869 -14.90331 -14.84017 -14.73901 -14.42018 -14.09480 -13.77253 -13.60331 -13.41632 -13.23507 -13.07522 -12.84749 -12.67603 -12.56952 -12.50291 -12.44857 -12.39334 -12.09097 -11.80670 -11.51614 -11.40557 -11.30533 -11.10184 -11.06936 -10.98988 -10.80612 -10.35118 -9.87185 -9.71842 -9.52043 -9.16941 -9.10420 -9.03027 -8.30100 -6.55706 -6.26144 -3.97320 2.13125 2.26636 2.87665 2.96105 3.19330 3.24113 3.27560 3.34614 3.63656 3.93859 4.12729 4.15982 4.28372 4.39520 4.51746 4.62366 4.66758 4.76487 4.79326 4.90739 4.93728 5.00025 5.04379 5.06439 5.09395 5.21662 5.24423 5.30104 5.33583 5.43679 5.47993 5.50046 5.51408 5.59331 5.74131 5.74501 5.79064 5.81115 5.89279 6.05943 6.08995 6.40258 6.69453 7.29830 7.51367 7.55540 7.83837 8.30625 8.43497 9.19419 10.81226 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026589 B = 0.001772 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.805041 B =15795.147024 C =16095.214509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.351 6.351 4 C 0.086 3.914 5 H 0.085 0.915 6 C 0.546 3.454 7 O -0.516 6.516 8 N -0.645 5.645 9 C 0.077 3.923 10 C 0.119 3.881 11 N -0.726 5.726 12 C 0.536 3.464 13 O -0.511 6.511 14 C -0.155 4.155 15 S -0.059 6.059 16 C -0.537 4.537 17 H 0.073 0.927 18 C 0.074 3.926 19 N -0.867 5.867 20 Si 0.919 3.081 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 C 0.096 3.904 25 C -0.110 4.110 26 C -0.149 4.149 27 C -0.142 4.142 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.055 0.945 33 H 0.091 0.909 34 H 0.087 0.913 35 H 0.134 0.866 36 H 0.402 0.598 37 H 0.092 0.908 38 H 0.091 0.909 39 H 0.269 0.731 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.085 0.915 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.057 0.943 48 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.111 -11.221 -0.749 27.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.269 6.269 4 C 0.025 3.975 5 H 0.103 0.897 6 C 0.335 3.665 7 O -0.390 6.390 8 N -0.384 5.384 9 C -0.048 4.048 10 C 0.012 3.988 11 N -0.380 5.380 12 C 0.323 3.677 13 O -0.385 6.385 14 C -0.305 4.305 15 S 0.167 5.833 16 C -0.685 4.685 17 H 0.091 0.909 18 C -0.135 4.135 19 N -0.502 5.502 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.207 1.207 23 H -0.197 1.197 24 C -0.027 4.027 25 C -0.129 4.129 26 C -0.206 4.206 27 C -0.199 4.199 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.066 0.934 32 H 0.073 0.927 33 H 0.109 0.891 34 H 0.106 0.894 35 H 0.152 0.848 36 H 0.237 0.763 37 H 0.110 0.890 38 H 0.110 0.890 39 H 0.079 0.921 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.076 0.924 48 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -25.777 -9.893 -2.664 27.739 hybrid contribution 1.084 -1.241 2.663 3.132 sum -24.693 -11.134 -0.001 27.087 Atomic orbital electron populations 1.21731 0.93392 1.02230 1.03434 1.22739 0.96026 0.83583 1.00282 1.88036 1.18582 1.26305 1.93969 1.21904 0.83965 0.96869 0.94797 0.89729 1.20075 0.79633 0.85674 0.81149 1.90736 1.45591 1.45667 1.56977 1.49230 1.05569 1.39545 1.44011 1.23820 0.79918 0.98105 1.02941 1.22679 0.82581 0.97346 0.96191 1.45843 1.05516 1.68496 1.18191 1.20403 0.84233 0.75969 0.87133 1.90719 1.86344 1.43047 1.18351 1.23543 0.97584 1.05461 1.03926 1.85419 0.94142 1.84070 1.19619 1.22860 0.93157 1.50482 1.02010 0.90877 1.24989 0.98221 0.94498 0.95824 1.70008 1.20984 1.40794 1.18425 0.86168 0.80628 0.78209 0.80498 1.20267 1.20732 1.19689 1.23358 0.88884 0.96433 0.94024 1.21590 1.00468 0.97548 0.93308 1.21908 1.02395 0.96656 0.99614 1.21718 1.01417 0.96340 1.00450 0.91692 0.91024 0.91699 0.93417 0.92676 0.89073 0.89442 0.84846 0.76291 0.88993 0.89024 0.92135 0.89413 0.89244 0.89651 0.91937 0.91716 0.92678 0.92707 0.92373 0.91520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.28 37.16 0.38 -0.55 16 2 C 0.05 0.35 6.14 37.16 0.23 0.58 16 3 O -0.35 -3.63 8.42 -54.98 -0.46 -4.09 16 4 C 0.09 0.80 2.19 -27.89 -0.06 0.74 16 5 H 0.08 0.61 7.60 -51.92 -0.39 0.21 16 6 C 0.55 6.50 6.41 -10.99 -0.07 6.43 16 7 O -0.52 -8.27 17.30 -14.19 -0.25 -8.52 16 8 N -0.65 -6.27 3.69 -185.09 -0.68 -6.96 16 9 C 0.08 0.61 7.94 -8.38 -0.07 0.54 16 10 C 0.12 1.16 4.62 -67.68 -0.31 0.85 16 11 N -0.73 -7.77 5.38 -53.49 -0.29 -8.06 16 12 C 0.54 8.77 7.85 -10.98 -0.09 8.69 16 13 O -0.51 -10.50 15.46 5.56 0.09 -10.42 16 14 C -0.15 -2.83 6.16 36.01 0.22 -2.61 16 15 S -0.06 -1.53 20.57 -107.50 -2.21 -3.74 16 16 C -0.54 -14.77 9.50 30.94 0.29 -14.48 16 17 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 18 C 0.07 2.06 5.49 -17.43 -0.10 1.96 16 19 N -0.87 -25.53 13.22 55.49 0.73 -24.80 16 20 Si 0.92 20.85 29.55 -169.99 -5.02 15.83 16 21 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 24 C 0.10 0.83 8.38 -8.51 -0.07 0.76 16 25 C -0.11 -0.90 2.72 -90.62 -0.25 -1.15 16 26 C -0.15 -0.95 8.16 37.16 0.30 -0.64 16 27 C -0.14 -1.34 8.81 37.16 0.33 -1.01 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.30 8.01 -51.93 -0.42 -0.12 16 32 H 0.06 0.31 6.12 -51.93 -0.32 -0.01 16 33 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.66 6.31 -51.93 -0.33 0.34 16 35 H 0.13 1.57 7.45 -51.93 -0.39 1.18 16 36 H 0.40 3.05 8.76 -40.82 -0.36 2.69 16 37 H 0.09 1.55 8.14 -51.92 -0.42 1.13 16 38 H 0.09 1.52 8.14 -51.92 -0.42 1.10 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 40 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 0.60 8.13 -51.93 -0.42 0.18 16 42 H 0.09 0.68 5.95 -51.93 -0.31 0.37 16 43 H 0.06 0.40 6.72 -51.93 -0.35 0.05 16 44 H 0.06 0.39 8.14 -51.94 -0.42 -0.03 16 45 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 46 H 0.05 0.62 7.41 -51.92 -0.38 0.23 16 47 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.66 7.54 -51.93 -0.39 0.27 16 LS Contribution 407.09 15.07 6.13 6.13 Total: -1.00 -36.24 407.09 -9.04 -45.28 By element: Atomic # 1 Polarization: 7.05 SS G_CDS: -7.83 Total: -0.78 kcal Atomic # 6 Polarization: -0.64 SS G_CDS: 0.75 Total: 0.10 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: -0.24 Total: -39.81 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.62 Total: -23.03 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Atomic # 16 Polarization: -1.53 SS G_CDS: -2.21 Total: -3.74 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -36.24 -9.04 -45.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721327013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.824 kcal (2) G-P(sol) polarization free energy of solvation -36.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds