Wall clock time and date at job start Sat Apr 11 2020 07:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42894 * 109.47028 * 2 1 4 4 C 1.42908 * 113.99900 * 174.87334 * 3 2 1 5 5 H 1.09008 * 109.46547 * 341.83846 * 4 3 2 6 6 C 1.50698 * 109.46956 * 221.84105 * 4 3 2 7 7 O 1.21284 * 120.00121 * 350.97041 * 6 4 3 8 8 N 1.34775 * 119.99847 * 170.97284 * 6 4 3 9 9 C 1.47061 * 136.05833 * 4.39100 * 8 6 4 10 10 C 1.53760 * 87.88732 * 152.96679 * 9 8 6 11 11 N 1.46500 * 114.08300 * 139.78267 * 10 9 8 12 12 C 1.34779 * 120.00322 * 111.56496 * 11 10 9 13 13 O 1.21282 * 119.99263 * 359.97438 * 12 11 10 14 14 C 1.50699 * 120.00179 * 179.97438 * 12 11 10 15 15 S 1.81003 * 109.46765 * 179.97438 * 14 12 11 16 16 C 1.76200 * 99.99795 * 180.02562 * 15 14 12 17 17 H 1.08005 * 119.99993 * 0.02562 * 16 15 14 18 18 C 1.38800 * 120.00159 * 179.97438 * 16 15 14 19 19 N 1.31622 * 119.99717 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 120.00150 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46854 * 90.00061 * 20 18 16 22 22 H 1.48499 * 109.47225 * 210.00566 * 20 18 16 23 23 H 1.48501 * 109.46829 * 330.00308 * 20 18 16 24 24 C 1.47070 * 136.05716 * 184.77077 * 8 6 4 25 25 C 1.52995 * 109.47422 * 101.83726 * 4 3 2 26 26 C 1.53001 * 109.47496 * 294.16961 * 25 4 3 27 27 C 1.53003 * 109.47171 * 54.16521 * 25 4 3 28 28 H 1.09001 * 109.46903 * 59.99817 * 1 2 3 29 29 H 1.09003 * 109.47224 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46895 * 300.00354 * 1 2 3 31 31 H 1.08991 * 109.46953 * 120.00221 * 2 1 3 32 32 H 1.09000 * 109.46680 * 240.00094 * 2 1 3 33 33 H 1.09003 * 113.46991 * 267.69560 * 9 8 6 34 34 H 1.09003 * 113.46803 * 38.14319 * 9 8 6 35 35 H 1.08999 * 114.39247 * 272.67437 * 10 9 8 36 36 H 0.97007 * 120.00143 * 291.55824 * 11 10 9 37 37 H 1.08999 * 109.46996 * 299.99641 * 14 12 11 38 38 H 1.08997 * 109.47010 * 59.99992 * 14 12 11 39 39 H 0.97004 * 120.00215 * 179.97438 * 19 18 16 40 40 H 1.09007 * 113.46482 * 321.86113 * 24 8 6 41 41 H 1.08995 * 113.46805 * 92.29607 * 24 8 6 42 42 H 1.09000 * 109.47234 * 174.16437 * 25 4 3 43 43 H 1.09002 * 109.47362 * 66.52039 * 26 25 4 44 44 H 1.08989 * 109.47621 * 186.52736 * 26 25 4 45 45 H 1.09003 * 109.46784 * 306.52791 * 26 25 4 46 46 H 1.09010 * 109.46886 * 59.99946 * 27 25 4 47 47 H 1.08995 * 109.47470 * 179.97438 * 27 25 4 48 48 H 1.09005 * 109.47215 * 300.00497 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4260 1.4618 0.1167 5 1 3.8355 0.5275 0.5009 6 6 3.7632 2.5849 1.0632 7 8 2.8898 3.3279 1.4583 8 7 5.0354 2.7638 1.4706 9 6 6.3393 2.1540 1.1695 10 6 6.9904 3.4924 1.5558 11 7 8.2296 3.3544 2.3249 12 6 9.4079 3.7063 1.7732 13 8 9.4423 4.1368 0.6399 14 6 10.6826 3.5648 2.5646 15 16 12.0823 4.1145 1.5571 16 6 13.4013 3.8477 2.6945 17 1 13.1946 3.4521 3.6780 18 6 14.7061 4.1449 2.3261 19 7 14.9580 4.6265 1.1274 20 14 16.1046 3.8613 3.5317 21 1 16.6334 2.4842 3.3612 22 1 17.1881 4.8433 3.2728 23 1 15.6039 4.0311 4.9194 24 6 5.7296 3.6502 2.4169 25 6 4.0288 1.7555 -1.2586 26 6 3.8121 0.5519 -2.1780 27 6 3.3486 2.9864 -1.8612 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8933 -0.5138 0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 6.6006 1.3349 1.8396 34 1 6.4654 1.8958 0.1181 35 1 7.0657 4.2089 0.7379 36 1 8.2022 3.0097 3.2313 37 1 10.6207 4.1756 3.4653 38 1 10.8236 2.5204 2.8427 39 1 15.8699 4.8345 0.8700 40 1 5.3360 4.6666 2.4281 41 1 5.8300 3.2255 3.4156 42 1 5.0970 1.9453 -1.1541 43 1 2.7468 0.4327 -2.3757 44 1 4.3403 0.7127 -3.1177 45 1 4.1949 -0.3475 -1.6954 46 1 3.5029 3.8440 -1.2062 47 1 3.7783 3.1959 -2.8407 48 1 2.2803 2.7966 -1.9657 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001721327013.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:12:55 Heat of formation + Delta-G solvation = -110.558688 kcal Electronic energy + Delta-G solvation = -27701.798592 eV Core-core repulsion = 23690.505873 eV Total energy + Delta-G solvation = -4011.292718 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.95909 -40.66770 -39.59904 -38.40394 -35.87793 -34.92287 -34.55023 -32.13149 -31.48738 -29.97068 -28.16945 -27.80892 -27.55061 -26.85219 -23.69638 -23.29658 -21.82584 -21.67479 -20.27068 -19.74618 -18.35939 -18.04991 -17.96015 -17.52599 -17.10026 -16.85656 -16.84838 -16.35171 -16.19984 -15.62277 -15.30274 -15.04145 -14.76672 -14.67723 -14.52221 -14.23100 -14.07406 -13.82254 -13.49775 -13.30374 -13.29721 -13.18057 -13.13058 -13.09056 -13.03511 -12.87218 -12.58864 -12.46553 -12.19415 -12.17198 -11.94120 -11.70598 -11.64584 -11.16851 -11.11489 -10.92928 -10.39685 -10.22642 -10.14682 -9.87525 -8.62245 -8.31978 -6.08947 1.22818 1.39063 1.39918 1.44395 1.53063 1.59260 1.63915 2.28888 2.34842 2.70901 3.02610 3.19307 3.35058 3.36440 3.63745 3.72427 3.77705 3.95658 4.01394 4.11825 4.16256 4.20153 4.32022 4.35716 4.38120 4.44559 4.47132 4.54397 4.58353 4.58857 4.71767 4.76268 4.81174 4.87768 4.91039 4.95410 5.00773 5.11822 5.25653 5.30438 5.37378 5.42332 5.45466 6.10573 6.22792 6.44720 6.55519 6.97757 7.10091 7.24707 8.76941 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026589 B = 0.001772 C = 0.001739 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1052.805041 B =15795.147024 C =16095.214509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.043 3.957 3 O -0.378 6.378 4 C 0.089 3.911 5 H 0.111 0.889 6 C 0.540 3.460 7 O -0.569 6.569 8 N -0.645 5.645 9 C 0.087 3.913 10 C 0.115 3.885 11 N -0.695 5.695 12 C 0.541 3.459 13 O -0.560 6.560 14 C -0.131 4.131 15 S -0.152 6.152 16 C -0.545 4.545 17 H 0.084 0.916 18 C 0.014 3.986 19 N -0.911 5.911 20 Si 0.996 3.004 21 H -0.268 1.268 22 H -0.281 1.281 23 H -0.258 1.258 24 C 0.099 3.901 25 C -0.108 4.108 26 C -0.144 4.144 27 C -0.139 4.139 28 H 0.058 0.942 29 H 0.094 0.906 30 H 0.049 0.951 31 H 0.057 0.943 32 H 0.073 0.927 33 H 0.122 0.878 34 H 0.094 0.906 35 H 0.109 0.891 36 H 0.423 0.577 37 H 0.111 0.889 38 H 0.116 0.884 39 H 0.270 0.730 40 H 0.076 0.924 41 H 0.121 0.879 42 H 0.089 0.911 43 H 0.061 0.939 44 H 0.068 0.932 45 H 0.072 0.928 46 H 0.028 0.972 47 H 0.067 0.933 48 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.210 -13.877 1.062 28.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.033 4.033 3 O -0.297 6.297 4 C 0.028 3.972 5 H 0.129 0.871 6 C 0.331 3.669 7 O -0.447 6.447 8 N -0.382 5.382 9 C -0.036 4.036 10 C 0.007 3.993 11 N -0.350 5.350 12 C 0.328 3.672 13 O -0.438 6.438 14 C -0.282 4.282 15 S 0.075 5.925 16 C -0.693 4.693 17 H 0.102 0.898 18 C -0.191 4.191 19 N -0.548 5.548 20 Si 0.818 3.182 21 H -0.193 1.193 22 H -0.206 1.206 23 H -0.182 1.182 24 C -0.024 4.024 25 C -0.127 4.127 26 C -0.201 4.201 27 C -0.196 4.196 28 H 0.077 0.923 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.113 0.887 35 H 0.127 0.873 36 H 0.262 0.738 37 H 0.130 0.870 38 H 0.134 0.866 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.138 0.862 42 H 0.107 0.893 43 H 0.080 0.920 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.047 0.953 47 H 0.086 0.914 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -25.896 -12.589 -0.810 28.805 hybrid contribution 0.977 -0.409 2.123 2.373 sum -24.918 -12.998 1.313 28.135 Atomic orbital electron populations 1.21762 0.93163 1.03407 1.02409 1.22962 0.96331 0.82426 1.01553 1.88022 1.19196 1.28392 1.94064 1.21980 0.83924 0.96748 0.94568 0.87093 1.20659 0.79534 0.85774 0.80978 1.90704 1.47230 1.47735 1.59015 1.49238 1.05620 1.39579 1.43770 1.23907 0.77979 0.97492 1.04259 1.22608 0.82171 0.98519 0.95954 1.45431 1.04056 1.66598 1.18905 1.20058 0.85059 0.75873 0.86258 1.90718 1.87014 1.45640 1.20388 1.23384 0.95028 1.06802 1.02968 1.85601 0.98365 1.85263 1.23301 1.23218 0.93660 1.50091 1.02316 0.89763 1.26087 1.01290 0.94032 0.97697 1.70177 1.21606 1.42261 1.20734 0.84990 0.76700 0.78258 0.78265 1.19335 1.20602 1.18197 1.23462 0.87532 0.96284 0.95097 1.21596 1.00262 0.97633 0.93164 1.21879 1.02549 0.96279 0.99411 1.21678 1.01214 0.96274 1.00470 0.92268 0.88720 0.93172 0.92454 0.90910 0.85979 0.88748 0.87293 0.73835 0.87041 0.86600 0.92089 0.90547 0.86169 0.89280 0.92028 0.91327 0.90926 0.95312 0.91440 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 10.28 71.98 0.74 -0.97 16 2 C 0.04 0.53 6.14 71.98 0.44 0.98 16 3 O -0.38 -7.57 8.42 -130.10 -1.10 -8.67 16 4 C 0.09 1.52 2.19 29.85 0.07 1.58 16 5 H 0.11 1.25 7.60 -2.38 -0.02 1.24 16 6 C 0.54 12.56 6.41 87.66 0.56 13.12 16 7 O -0.57 -18.73 17.30 15.84 0.27 -18.45 16 8 N -0.65 -11.49 3.69 -857.89 -3.16 -14.66 16 9 C 0.09 1.13 7.94 83.27 0.66 1.79 16 10 C 0.11 2.02 4.62 45.55 0.21 2.23 16 11 N -0.70 -12.99 5.38 -441.52 -2.38 -15.37 16 12 C 0.54 16.98 7.85 87.66 0.69 17.67 16 13 O -0.56 -23.23 15.46 -3.04 -0.05 -23.28 16 14 C -0.13 -4.56 6.16 71.24 0.44 -4.12 16 15 S -0.15 -8.01 20.57 -56.49 -1.16 -9.17 16 16 C -0.55 -29.84 9.50 67.95 0.65 -29.19 16 17 H 0.08 4.24 7.80 -2.91 -0.02 4.22 16 18 C 0.01 0.76 5.49 84.86 0.47 1.23 16 19 N -0.91 -54.68 13.22 21.65 0.29 -54.39 16 20 Si 1.00 42.29 29.55 68.60 2.03 44.32 16 21 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 22 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 23 H -0.26 -10.25 7.11 99.48 0.71 -9.55 16 24 C 0.10 1.53 8.38 83.17 0.70 2.23 16 25 C -0.11 -1.61 2.72 -10.79 -0.03 -1.64 16 26 C -0.14 -1.50 8.16 71.98 0.59 -0.91 16 27 C -0.14 -2.67 8.81 71.98 0.63 -2.03 16 28 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 29 H 0.09 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.59 8.01 -2.39 -0.02 0.57 16 32 H 0.07 0.63 6.12 -2.39 -0.01 0.62 16 33 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.09 1.17 6.31 -2.39 -0.02 1.15 16 35 H 0.11 2.58 7.45 -2.39 -0.02 2.56 16 36 H 0.42 4.63 8.76 -92.70 -0.81 3.82 16 37 H 0.11 3.48 8.14 -2.39 -0.02 3.46 16 38 H 0.12 3.51 8.14 -2.40 -0.02 3.49 16 39 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 40 H 0.08 1.39 8.14 -2.38 -0.02 1.37 16 41 H 0.12 1.17 8.13 -2.39 -0.02 1.15 16 42 H 0.09 1.26 5.95 -2.39 -0.01 1.24 16 43 H 0.06 0.66 6.72 -2.39 -0.02 0.65 16 44 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 45 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.03 0.68 7.41 -2.38 -0.02 0.66 16 47 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.06 1.20 7.54 -2.38 -0.02 1.18 16 Total: -1.00 -83.37 407.09 1.70 -81.66 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.15 Total: 16.06 kcal Atomic # 6 Polarization: -4.87 SS G_CDS: 6.81 Total: 1.94 kcal Atomic # 7 Polarization: -79.16 SS G_CDS: -5.25 Total: -84.41 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -0.87 Total: -50.40 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 16 Polarization: -8.01 SS G_CDS: -1.16 Total: -9.17 kcal Total: -83.37 1.70 -81.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001721327013.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.897 kcal (2) G-P(sol) polarization free energy of solvation -83.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds