Wall clock time and date at job start Sat Apr 11 2020 07:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36248 * 126.39590 * 2 1 4 4 O 1.35207 * 125.01395 * 0.05612 * 3 2 1 5 5 N 1.30918 * 109.97266 * 180.02562 * 3 2 1 6 6 C 1.35556 * 109.70921 * 359.97438 * 5 3 2 7 7 C 1.40026 * 133.26470 * 179.97438 * 6 5 3 8 8 C 1.36201 * 120.08653 * 180.02562 * 7 6 5 9 9 C 1.40163 * 120.49238 * 359.97438 * 8 7 6 10 10 C 1.47505 * 119.94597 * 179.97438 * 9 8 7 11 11 O 1.21603 * 120.00095 * 180.02562 * 10 9 8 12 12 N 1.34783 * 120.00324 * 0.02562 * 10 9 8 13 13 C 1.46496 * 120.00198 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.46653 * 35.00100 * 13 12 10 15 15 C 1.52997 * 109.47035 * 154.99692 * 13 12 10 16 16 N 1.46497 * 109.47371 * 305.00232 * 15 13 12 17 17 C 1.36938 * 120.00225 * 179.97438 * 16 15 13 18 18 H 1.08002 * 119.99654 * 359.97438 * 17 16 15 19 19 C 1.38811 * 120.00185 * 180.02562 * 17 16 15 20 20 N 1.31617 * 120.00080 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 120.00112 * 180.02562 * 19 17 16 22 22 H 1.48506 * 109.47004 * 359.97438 * 21 19 17 23 23 H 1.48493 * 109.47400 * 119.99343 * 21 19 17 24 24 H 1.48506 * 109.46879 * 239.99573 * 21 19 17 25 25 C 1.52996 * 109.47477 * 275.00153 * 13 12 10 26 26 C 1.53002 * 117.49888 * 356.25271 * 25 13 12 27 27 C 1.53000 * 117.50107 * 64.91033 * 25 13 12 28 28 C 1.39528 * 120.10068 * 0.23922 * 9 8 7 29 29 C 1.38211 * 119.59211 * 359.50546 * 28 9 8 30 30 H 1.09005 * 109.46752 * 269.97891 * 1 2 3 31 31 H 1.09003 * 109.46724 * 29.97124 * 1 2 3 32 32 H 1.08993 * 109.47414 * 149.97397 * 1 2 3 33 33 H 0.96703 * 113.99864 * 90.00212 * 4 3 2 34 34 H 1.08001 * 119.95748 * 0.02562 * 7 6 5 35 35 H 1.07999 * 119.75291 * 179.97438 * 8 7 6 36 36 H 0.97000 * 119.99550 * 359.97438 * 12 10 9 37 37 H 1.08995 * 109.47084 * 65.00455 * 15 13 12 38 38 H 1.09003 * 109.47102 * 185.00047 * 15 13 12 39 39 H 0.96997 * 120.00193 * 0.02562 * 16 15 13 40 40 H 0.96996 * 120.00274 * 180.02562 * 20 19 17 41 41 H 1.09002 * 115.54951 * 210.58245 * 25 13 12 42 42 H 1.09000 * 117.49996 * 215.00804 * 26 25 13 43 43 H 1.08999 * 117.49664 * 0.02562 * 26 25 13 44 44 H 1.09008 * 117.49673 * 359.97438 * 27 25 13 45 45 H 1.08999 * 117.49942 * 144.97366 * 27 25 13 46 46 H 1.08001 * 120.19888 * 179.71779 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2735 1.0967 0.0000 4 8 1.8425 2.3782 0.0011 5 7 3.5293 0.7266 -0.0006 6 6 3.6070 -0.6268 -0.0004 7 6 4.6800 -1.5264 -0.0012 8 6 4.4460 -2.8682 -0.0013 9 6 3.1340 -3.3614 0.0001 10 6 2.8944 -4.8168 -0.0006 11 8 1.7566 -5.2458 0.0001 12 7 3.9367 -5.6714 -0.0019 13 6 3.6988 -7.1169 -0.0020 14 1 2.8085 -7.3385 -0.5906 15 6 4.9052 -7.8323 -0.6132 16 7 5.1747 -7.2846 -1.9449 17 6 6.2157 -7.7731 -2.6884 18 1 6.8384 -8.5620 -2.2928 19 6 6.4714 -7.2538 -3.9500 20 7 5.7130 -6.2921 -4.4319 21 14 7.8911 -7.9207 -4.9646 22 1 8.5842 -8.9906 -4.2027 23 1 7.3702 -8.4779 -6.2387 24 1 8.8478 -6.8236 -5.2585 25 6 3.4934 -7.6001 1.4351 26 6 3.6548 -6.5715 2.5561 27 6 2.2621 -7.0864 2.1840 28 6 2.0542 -2.4776 -0.0036 29 6 2.2872 -1.1153 0.0018 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8903 -0.5134 32 1 -0.3634 -0.8897 -0.5142 33 1 1.7178 2.7505 0.8848 34 1 5.6944 -1.1559 -0.0018 35 1 5.2776 -3.5573 -0.0023 36 1 4.8443 -5.3292 -0.0028 37 1 5.7769 -7.6836 0.0241 38 1 4.6925 -8.8982 -0.6949 39 1 4.6162 -6.5753 -2.2997 40 1 5.8914 -5.9294 -5.3137 41 1 3.8165 -8.6211 1.6384 42 1 4.0841 -6.9157 3.4970 43 1 3.9068 -5.5504 2.2698 44 1 1.5986 -6.4037 1.6530 45 1 1.7750 -7.7695 2.8798 46 1 1.0426 -2.8559 -0.0072 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001723356609.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:04 Heat of formation + Delta-G solvation = 29.024760 kcal Electronic energy + Delta-G solvation = -29857.487428 eV Core-core repulsion = 25749.096302 eV Total energy + Delta-G solvation = -4108.391126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.33164 -41.36851 -39.27363 -38.35774 -37.28608 -36.51528 -35.38032 -34.81962 -33.06097 -31.66656 -30.73725 -29.31369 -28.01012 -25.99948 -24.87917 -23.86343 -23.38682 -22.93725 -22.01534 -21.92270 -20.93775 -19.68951 -19.29952 -18.88847 -18.32987 -17.65769 -17.18325 -17.15858 -16.77220 -16.49065 -15.87114 -15.51389 -15.36814 -15.16189 -15.11920 -15.05304 -14.83425 -14.44038 -14.26993 -14.13201 -13.63188 -13.56373 -13.11015 -13.06634 -12.82727 -12.68293 -12.65793 -12.55627 -12.47123 -12.21427 -12.01392 -11.80696 -11.54380 -11.27424 -11.14306 -10.98200 -10.91957 -10.74737 -9.97862 -9.49767 -9.23320 -8.97480 -7.90795 -5.20131 -0.55212 0.27263 1.08896 1.26134 1.50547 1.50991 1.60820 1.95510 2.18244 2.57323 2.58603 2.80585 3.00537 3.27422 3.43906 3.62040 3.71274 3.73581 3.89980 4.01941 4.11922 4.13231 4.15541 4.22817 4.31066 4.33363 4.48414 4.54513 4.58204 4.61929 4.67240 4.87857 4.92384 4.98891 5.08500 5.12566 5.19045 5.24857 5.27836 5.32480 5.44632 5.54184 5.56955 5.61092 5.64759 6.29516 6.51697 6.57252 6.58821 7.22481 7.37358 8.10891 8.34492 9.32114 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009950 B = 0.003131 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2813.369561 B = 8939.486624 C =10931.412418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.066 3.934 2 N -0.488 5.488 3 C 0.466 3.534 4 O -0.438 6.438 5 N -0.527 5.527 6 C 0.067 3.933 7 C -0.077 4.077 8 C -0.084 4.084 9 C -0.129 4.129 10 C 0.564 3.436 11 O -0.568 6.568 12 N -0.697 5.697 13 C 0.179 3.821 14 H 0.064 0.936 15 C 0.149 3.851 16 N -0.743 5.743 17 C -0.239 4.239 18 H 0.080 0.920 19 C -0.073 4.073 20 N -0.967 5.967 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.299 1.299 24 H -0.295 1.295 25 C -0.165 4.165 26 C -0.163 4.163 27 C -0.188 4.188 28 C -0.036 4.036 29 C 0.030 3.970 30 H 0.100 0.900 31 H 0.110 0.890 32 H 0.090 0.910 33 H 0.435 0.565 34 H 0.151 0.849 35 H 0.148 0.852 36 H 0.409 0.591 37 H 0.042 0.958 38 H 0.039 0.961 39 H 0.374 0.626 40 H 0.249 0.751 41 H 0.126 0.874 42 H 0.110 0.890 43 H 0.086 0.914 44 H 0.093 0.907 45 H 0.103 0.897 46 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.156 13.005 17.592 24.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.189 5.189 3 C 0.163 3.837 4 O -0.243 6.243 5 N -0.259 5.259 6 C -0.053 4.053 7 C -0.096 4.096 8 C -0.105 4.105 9 C -0.134 4.134 10 C 0.353 3.647 11 O -0.450 6.450 12 N -0.348 5.348 13 C 0.074 3.926 14 H 0.082 0.918 15 C 0.023 3.977 16 N -0.386 5.386 17 C -0.371 4.371 18 H 0.098 0.902 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.800 3.200 22 H -0.188 1.188 23 H -0.227 1.227 24 H -0.222 1.222 25 C -0.185 4.185 26 C -0.200 4.200 27 C -0.224 4.224 28 C -0.058 4.058 29 C -0.078 4.078 30 H 0.119 0.881 31 H 0.128 0.872 32 H 0.108 0.892 33 H 0.298 0.702 34 H 0.169 0.831 35 H 0.165 0.835 36 H 0.246 0.754 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.206 0.794 40 H 0.057 0.943 41 H 0.144 0.856 42 H 0.128 0.872 43 H 0.105 0.895 44 H 0.111 0.889 45 H 0.121 0.879 46 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -10.300 13.182 16.991 23.845 hybrid contribution 0.047 -0.175 -0.784 0.804 sum -10.253 13.007 16.207 23.173 Atomic orbital electron populations 1.22390 0.73181 1.06273 1.05533 1.45778 1.08949 1.04057 1.60144 1.20467 0.83762 0.82306 0.97139 1.84763 1.86050 1.16692 1.36827 1.70592 1.17170 1.11726 1.26400 1.19219 0.93076 0.89587 1.03464 1.20088 0.98315 0.90880 1.00363 1.20909 0.95759 0.95514 0.98316 1.19569 0.94185 0.92083 1.07580 1.18186 0.84682 0.86351 0.75510 1.90668 1.22995 1.79386 1.51924 1.45826 1.09514 1.06231 1.73182 1.20536 0.98077 0.79129 0.94899 0.91801 1.21059 0.94745 0.96054 0.85881 1.42534 1.36011 1.44662 1.15405 1.19644 1.05771 1.14603 0.97054 0.90232 1.25518 1.02114 0.99792 0.99161 1.69834 1.42442 1.31050 1.18443 0.85118 0.78975 0.77500 0.78406 1.18835 1.22666 1.22197 1.22626 1.04414 1.00064 0.91374 1.22963 0.99653 0.98699 0.98723 1.23261 0.91501 1.04281 1.03398 1.19928 0.99892 0.88024 0.97936 1.18474 0.91180 0.89026 1.09160 0.88142 0.87153 0.89152 0.70172 0.83094 0.83460 0.75373 0.93987 0.94310 0.79351 0.94258 0.85586 0.87221 0.89547 0.88903 0.87874 0.84128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.68 11.12 127.77 1.42 2.10 16 2 N -0.49 -9.63 3.23 -655.33 -2.11 -11.74 16 3 C 0.47 9.85 8.98 179.75 1.61 11.46 16 4 O -0.44 -5.77 13.51 -84.88 -1.15 -6.92 16 5 N -0.53 -14.59 11.29 -306.25 -3.46 -18.04 16 6 C 0.07 1.88 7.22 39.61 0.29 2.17 16 7 C -0.08 -2.03 10.03 22.23 0.22 -1.81 16 8 C -0.08 -2.24 9.46 22.26 0.21 -2.03 16 9 C -0.13 -3.79 5.88 -20.06 -0.12 -3.91 16 10 C 0.56 18.57 6.44 86.69 0.56 19.13 16 11 O -0.57 -21.28 13.31 -4.04 -0.05 -21.33 16 12 N -0.70 -21.95 3.13 -445.73 -1.39 -23.34 16 13 C 0.18 5.86 2.57 44.99 0.12 5.98 16 14 H 0.06 2.47 7.58 -2.39 -0.02 2.45 16 15 C 0.15 5.55 5.78 86.38 0.50 6.05 16 16 N -0.74 -36.14 5.43 -343.46 -1.87 -38.01 16 17 C -0.24 -12.87 9.99 84.03 0.84 -12.03 16 18 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 19 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 20 N -0.97 -58.88 13.06 21.65 0.28 -58.60 16 21 Si 0.97 45.68 29.55 68.60 2.03 47.71 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.30 -14.31 7.11 99.48 0.71 -13.60 16 24 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 25 C -0.17 -4.33 5.73 -10.79 -0.06 -4.40 16 26 C -0.16 -3.80 9.69 30.62 0.30 -3.51 16 27 C -0.19 -4.84 9.85 30.62 0.30 -4.53 16 28 C -0.04 -0.98 9.58 22.57 0.22 -0.77 16 29 C 0.03 0.77 6.87 38.68 0.27 1.04 16 30 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.11 0.73 8.12 -2.39 -0.02 0.71 16 32 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.43 0.55 9.06 -74.05 -0.67 -0.12 16 34 H 0.15 3.43 8.06 -2.91 -0.02 3.41 16 35 H 0.15 3.51 6.36 -2.91 -0.02 3.49 16 36 H 0.41 12.19 6.60 -92.71 -0.61 11.58 16 37 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 38 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 39 H 0.37 19.90 7.33 -92.71 -0.68 19.22 16 40 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 41 H 0.13 2.90 8.08 -2.39 -0.02 2.88 16 42 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 43 H 0.09 2.14 6.41 -2.39 -0.02 2.12 16 44 H 0.09 2.91 5.25 -2.38 -0.01 2.90 16 45 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.14 3.60 7.64 -2.91 -0.02 3.58 16 Total: -1.00 -76.21 383.99 -1.49 -77.70 By element: Atomic # 1 Polarization: 42.20 SS G_CDS: -0.90 Total: 41.30 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 7.13 Total: 11.28 kcal Atomic # 7 Polarization: -141.18 SS G_CDS: -8.55 Total: -149.73 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -1.20 Total: -28.25 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -76.21 -1.49 -77.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001723356609.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.723 kcal (2) G-P(sol) polarization free energy of solvation -76.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds