Wall clock time and date at job start Sat Apr 11 2020 07:13:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.34109 * 125.15891 * 2 1 4 4 C 1.38021 * 107.88167 * 180.02562 * 3 2 1 5 5 C 1.47241 * 126.81122 * 179.97438 * 4 3 2 6 6 O 1.21629 * 119.99992 * 180.02562 * 5 4 3 7 7 N 1.34780 * 120.00278 * 0.02562 * 5 4 3 8 8 C 1.46494 * 120.00084 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.47053 * 175.67737 * 8 7 5 10 10 N 1.46494 * 112.90782 * 311.32363 * 9 8 7 11 11 C 1.36939 * 120.00020 * 292.59154 * 10 9 8 12 12 H 1.08008 * 119.99751 * 5.77972 * 11 10 9 13 13 C 1.38808 * 120.00581 * 185.77549 * 11 10 9 14 14 N 1.31621 * 119.99652 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00400 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.47170 * 89.99942 * 15 13 11 17 17 H 1.48500 * 109.47303 * 210.00418 * 15 13 11 18 18 H 1.48502 * 109.46759 * 330.00017 * 15 13 11 19 19 C 1.53787 * 113.61594 * 180.02562 * 9 8 7 20 20 C 1.53780 * 87.08119 * 220.02279 * 19 9 8 21 21 C 1.53782 * 87.08267 * 25.43336 * 20 19 9 22 22 C 1.46588 * 106.37644 * 0.22355 * 4 3 2 23 23 C 1.48321 * 126.52263 * 179.77133 * 22 4 3 24 24 C 1.46737 * 127.12114 * 145.00081 * 23 22 4 25 25 C 1.34360 * 106.02150 * 179.97438 * 24 23 22 26 26 O 1.34160 * 109.00350 * 0.02562 * 25 24 23 27 27 C 1.34083 * 110.75563 * 359.74587 * 26 25 24 28 28 N 1.31373 * 106.96409 * 359.62099 * 22 4 3 29 29 H 1.09005 * 109.47342 * 89.99709 * 1 2 3 30 30 H 1.09004 * 109.47493 * 209.99924 * 1 2 3 31 31 H 1.09004 * 109.47313 * 330.00296 * 1 2 3 32 32 H 1.07995 * 126.05610 * 0.02562 * 3 2 1 33 33 H 0.96996 * 119.99517 * 359.97438 * 7 5 4 34 34 H 1.09000 * 109.47803 * 55.67606 * 8 7 5 35 35 H 1.09007 * 109.47192 * 295.67754 * 8 7 5 36 36 H 0.96999 * 120.00223 * 112.60026 * 10 9 8 37 37 H 0.97002 * 119.99923 * 179.97438 * 14 13 11 38 38 H 1.09000 * 113.61071 * 105.46888 * 19 9 8 39 39 H 1.08995 * 113.61559 * 334.57254 * 19 9 8 40 40 H 1.08999 * 113.61072 * 139.98999 * 20 19 9 41 41 H 1.09002 * 113.61364 * 270.87977 * 20 19 9 42 42 H 1.08998 * 113.61063 * 89.11874 * 21 20 19 43 43 H 1.08998 * 113.61278 * 219.93484 * 21 20 19 44 44 H 1.07998 * 126.98520 * 359.96191 * 24 23 22 45 45 H 1.07998 * 125.49500 * 180.02562 * 25 24 23 46 46 H 1.07995 * 125.77231 * 180.25938 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2372 1.0964 0.0000 4 6 3.5551 0.6865 -0.0006 5 6 4.7476 1.5501 -0.0013 6 8 5.8580 1.0537 -0.0023 7 7 4.6089 2.8908 -0.0010 8 6 5.7954 3.7500 -0.0023 9 6 5.3647 5.2141 -0.1103 10 7 4.3936 5.4452 -1.1825 11 6 4.7707 5.2996 -2.4909 12 1 5.7548 4.9247 -2.7307 13 6 3.8882 5.6337 -3.5089 14 7 2.6891 6.0910 -3.2166 15 14 4.4024 5.4344 -5.2936 16 1 4.0403 4.0733 -5.7640 17 1 3.7050 6.4476 -6.1258 18 1 5.8706 5.6241 -5.4098 19 6 6.5420 6.2035 -0.1205 20 6 5.6850 7.1109 0.7777 21 6 4.9557 5.8367 1.2351 22 6 3.5321 -0.7792 -0.0064 23 6 4.7100 -1.6805 -0.0139 24 6 4.8330 -2.9825 0.6516 25 6 6.0681 -3.4288 0.3679 26 8 6.6942 -2.5235 -0.3992 27 6 5.8964 -1.4737 -0.6424 28 7 2.2696 -1.1427 -0.0006 29 1 -0.3634 0.0001 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5138 32 1 1.8894 2.1188 0.0004 33 1 3.7234 3.2866 -0.0006 34 1 6.4286 3.4939 -0.8517 35 1 6.3520 3.6023 0.9233 36 1 3.4836 5.7015 -0.9657 37 1 2.0725 6.3248 -3.9280 38 1 6.7462 6.6289 -1.1031 39 1 7.4370 5.8222 0.3710 40 1 6.2505 7.5992 1.5714 41 1 5.0507 7.8016 0.2222 42 1 5.4170 5.3552 2.0973 43 1 3.8794 5.9665 1.3484 44 1 4.0831 -3.4807 1.2482 45 1 6.4890 -4.3651 0.7034 46 1 6.1542 -0.6090 -1.2358 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724791532.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:08 Heat of formation + Delta-G solvation = 94.127101 kcal Electronic energy + Delta-G solvation = -30169.859681 eV Core-core repulsion = 26064.291604 eV Total energy + Delta-G solvation = -4105.568077 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.18875 -40.94630 -39.24060 -38.10691 -34.17872 -33.72987 -33.24445 -32.02412 -30.59189 -29.90494 -29.54968 -27.44758 -26.38714 -25.26962 -23.93140 -23.09965 -22.07864 -21.59100 -21.02498 -19.78681 -19.29620 -18.34313 -17.80880 -17.13264 -16.97481 -15.81804 -15.80441 -15.55437 -15.49107 -15.05231 -14.73404 -14.40897 -14.29813 -13.87607 -13.80534 -13.37324 -13.19665 -13.08962 -12.90924 -12.71398 -12.60068 -12.35085 -12.16621 -11.98510 -11.67740 -11.21710 -11.04752 -10.90129 -10.84382 -10.37394 -10.21934 -10.17844 -10.14293 -9.72781 -9.51926 -9.42960 -9.17742 -8.91720 -8.69416 -8.36372 -8.07717 -7.09162 -5.87215 -3.16667 1.60283 1.68263 2.15343 2.33093 3.04269 3.25503 3.38945 3.45524 3.46418 3.76016 3.86952 4.33624 4.50513 4.52358 4.81881 4.97902 4.99324 5.18863 5.21077 5.23657 5.25443 5.29764 5.38007 5.45487 5.50754 5.51899 5.58709 5.67349 5.77000 6.02063 6.08831 6.14091 6.20443 6.33691 6.34751 6.38703 6.40449 6.51530 6.57187 6.75241 6.80642 6.88627 7.01184 7.13897 7.27749 7.61309 7.68302 8.14312 8.31628 8.78999 9.43357 9.95906 10.31460 11.34725 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.009425 B = 0.003452 C = 0.003260 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.228626 B = 8108.513024 C = 8587.601062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.367 5.367 3 C 0.109 3.891 4 C -0.280 4.280 5 C 0.592 3.408 6 O -0.559 6.559 7 N -0.697 5.697 8 C 0.124 3.876 9 C 0.172 3.828 10 N -0.699 5.699 11 C -0.231 4.231 12 H 0.070 0.930 13 C -0.008 4.008 14 N -0.933 5.933 15 Si 0.902 3.098 16 H -0.290 1.290 17 H -0.292 1.292 18 H -0.281 1.281 19 C -0.149 4.149 20 C -0.129 4.129 21 C -0.144 4.144 22 C 0.203 3.797 23 C -0.139 4.139 24 C -0.188 4.188 25 C -0.054 4.054 26 O -0.182 6.182 27 C 0.054 3.946 28 N -0.292 5.292 29 H 0.079 0.921 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.187 0.813 33 H 0.399 0.601 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.077 0.923 43 H 0.063 0.937 44 H 0.148 0.852 45 H 0.201 0.799 46 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.475 -11.126 10.679 15.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.146 5.146 3 C -0.040 4.040 4 C -0.295 4.295 5 C 0.379 3.621 6 O -0.440 6.440 7 N -0.346 5.346 8 C -0.002 4.002 9 C 0.079 3.921 10 N -0.340 5.340 11 C -0.362 4.362 12 H 0.088 0.912 13 C -0.204 4.204 14 N -0.581 5.581 15 Si 0.734 3.266 16 H -0.218 1.218 17 H -0.219 1.219 18 H -0.207 1.207 19 C -0.189 4.189 20 C -0.166 4.166 21 C -0.182 4.182 22 C 0.035 3.965 23 C -0.142 4.142 24 C -0.207 4.207 25 C -0.120 4.120 26 O -0.078 6.078 27 C -0.017 4.017 28 N -0.112 5.112 29 H 0.097 0.903 30 H 0.108 0.892 31 H 0.110 0.890 32 H 0.204 0.796 33 H 0.234 0.766 34 H 0.083 0.917 35 H 0.073 0.927 36 H 0.220 0.780 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.166 0.834 45 H 0.217 0.783 46 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -1.358 -12.447 10.403 16.279 hybrid contribution -0.492 1.045 -0.943 1.491 sum -1.850 -11.403 9.460 14.931 Atomic orbital electron populations 1.21972 0.73713 1.04714 1.03933 1.48059 1.07046 1.03372 1.56128 1.23057 0.90591 0.93607 0.96759 1.21335 0.92787 0.92745 1.22618 1.17075 0.87289 0.81734 0.75994 1.90650 1.26268 1.74457 1.52664 1.45543 1.10685 1.04806 1.73548 1.21781 0.87037 0.91030 1.00397 1.20848 0.91964 0.90197 0.89065 1.42046 1.09061 1.82193 1.00691 1.19097 0.99201 1.35564 0.82292 0.91161 1.24685 0.96454 1.01505 0.97742 1.69645 1.06635 1.50302 1.31485 0.86259 0.77800 0.77240 0.85342 1.21789 1.21854 1.20674 1.23271 0.96833 0.98302 1.00530 1.22631 0.99023 0.96249 0.98729 1.23187 1.00351 0.97708 0.96935 1.20777 0.90012 0.89920 0.95790 1.18831 0.92982 0.95534 1.06892 1.22720 0.97951 0.95360 1.04713 1.23757 0.93256 0.95712 0.99266 1.83933 1.41959 1.26193 1.55680 1.24669 0.87990 0.89505 0.99531 1.77321 1.01326 1.06560 1.26040 0.90273 0.89155 0.88980 0.79600 0.76620 0.91730 0.92730 0.78013 0.93566 0.90625 0.91352 0.92827 0.90025 0.90486 0.91815 0.83383 0.78268 0.76439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.78 11.39 59.84 0.68 1.46 16 2 N -0.37 -4.76 3.95 -67.65 -0.27 -5.02 16 3 C 0.11 1.47 10.94 -16.64 -0.18 1.29 16 4 C -0.28 -4.59 6.31 -102.95 -0.65 -5.24 16 5 C 0.59 10.58 7.81 -12.60 -0.10 10.48 16 6 O -0.56 -11.02 13.04 5.25 0.07 -10.96 16 7 N -0.70 -11.82 5.38 -61.44 -0.33 -12.15 16 8 C 0.12 2.17 5.06 -4.05 -0.02 2.15 16 9 C 0.17 3.03 0.91 -131.00 -0.12 2.91 16 10 N -0.70 -15.13 4.56 -46.48 -0.21 -15.34 16 11 C -0.23 -5.81 9.24 -15.06 -0.14 -5.95 16 12 H 0.07 1.80 7.83 -52.48 -0.41 1.39 16 13 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 14 N -0.93 -25.88 13.07 55.49 0.73 -25.16 16 15 Si 0.90 21.69 29.55 -169.99 -5.02 16.67 16 16 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 C -0.15 -2.50 7.27 -25.92 -0.19 -2.69 16 20 C -0.13 -1.97 7.99 -25.92 -0.21 -2.18 16 21 C -0.14 -2.14 7.37 -25.92 -0.19 -2.33 16 22 C 0.20 3.41 7.34 -80.55 -0.59 2.82 16 23 C -0.14 -2.24 6.07 -103.17 -0.63 -2.87 16 24 C -0.19 -2.50 11.15 -37.52 -0.42 -2.92 16 25 C -0.05 -0.63 12.04 29.36 0.35 -0.27 16 26 O -0.18 -2.60 10.55 6.69 0.07 -2.53 16 27 C 0.05 0.85 10.28 29.88 0.31 1.15 16 28 N -0.29 -4.61 12.50 34.58 0.43 -4.17 16 29 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.09 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.19 1.99 7.48 -52.49 -0.39 1.59 16 33 H 0.40 6.41 7.06 -40.82 -0.29 6.12 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.05 0.90 7.94 -51.93 -0.41 0.48 16 36 H 0.39 8.85 7.88 -40.82 -0.32 8.52 16 37 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 38 H 0.08 1.45 7.79 -51.93 -0.40 1.04 16 39 H 0.07 1.01 8.10 -51.93 -0.42 0.59 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.08 1.02 7.96 -51.93 -0.41 0.61 16 43 H 0.06 0.94 8.10 -51.93 -0.42 0.52 16 44 H 0.15 1.71 8.06 -52.49 -0.42 1.29 16 45 H 0.20 1.43 8.06 -52.49 -0.42 1.00 16 46 H 0.22 3.55 6.36 -52.49 -0.33 3.22 16 LS Contribution 390.36 15.07 5.88 5.88 Total: -1.00 -32.22 390.36 -7.17 -39.39 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -6.34 Total: 15.89 kcal Atomic # 6 Polarization: -0.31 SS G_CDS: -2.18 Total: -2.50 kcal Atomic # 7 Polarization: -62.20 SS G_CDS: 0.35 Total: -61.85 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.14 Total: -13.48 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -32.22 -7.17 -39.39 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724791532.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.521 kcal (2) G-P(sol) polarization free energy of solvation -32.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds