Wall clock time and date at job start Sat Apr 11 2020 07:13:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47214 * 2 1 4 4 C 1.42894 * 114.00120 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47267 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47501 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99932 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00561 * 180.27580 * 6 5 4 9 9 C 1.47068 * 136.05297 * 359.35238 * 8 6 5 10 10 C 1.53236 * 88.08297 * 207.20540 * 9 8 6 11 11 C 1.52998 * 114.50734 * 220.45802 * 10 9 8 12 12 H 1.09008 * 109.46990 * 38.89800 * 11 10 9 13 13 C 1.53002 * 109.46967 * 278.90422 * 11 10 9 14 14 N 1.46495 * 109.47472 * 158.89911 * 11 10 9 15 15 C 1.34779 * 120.00188 * 204.99862 * 14 11 10 16 16 O 1.21273 * 120.00021 * 0.02562 * 15 14 11 17 17 C 1.50699 * 119.99605 * 179.97438 * 15 14 11 18 18 S 1.81011 * 109.46791 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99855 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00153 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99729 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00298 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99971 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47185 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46741 * 120.00103 * 23 21 19 26 26 H 1.48490 * 109.47519 * 239.99820 * 23 21 19 27 27 C 1.47065 * 136.06161 * 179.72263 * 8 6 5 28 28 H 1.09003 * 109.46741 * 299.99653 * 1 2 3 29 29 H 1.08993 * 109.47450 * 59.99848 * 1 2 3 30 30 H 1.09003 * 109.46863 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47158 * 239.99694 * 2 1 3 32 32 H 1.09002 * 109.47325 * 119.99932 * 2 1 3 33 33 H 1.08999 * 109.47105 * 59.99703 * 4 3 2 34 34 H 1.09003 * 109.47214 * 299.99775 * 4 3 2 35 35 H 1.08999 * 109.47379 * 59.99774 * 5 4 3 36 36 H 1.09003 * 109.47206 * 299.99708 * 5 4 3 37 37 H 1.09001 * 113.46333 * 321.93676 * 9 8 6 38 38 H 1.08995 * 113.46862 * 92.37158 * 9 8 6 39 39 H 1.08999 * 114.02293 * 87.71145 * 10 9 8 40 40 H 1.08996 * 109.47481 * 59.09627 * 13 11 10 41 41 H 1.08997 * 109.47148 * 179.10312 * 13 11 10 42 42 H 1.09003 * 109.46492 * 299.09541 * 13 11 10 43 43 H 0.97001 * 119.99873 * 24.99701 * 14 11 10 44 44 H 1.09004 * 109.47505 * 299.99918 * 17 15 14 45 45 H 1.08993 * 109.47400 * 60.00505 * 17 15 14 46 46 H 0.97001 * 120.00253 * 180.02562 * 22 21 19 47 47 H 1.09003 * 113.46662 * 267.62184 * 27 8 6 48 48 H 1.08995 * 113.46770 * 38.00036 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3276 3.0574 0.0012 7 8 6.0151 2.0582 0.0012 8 7 5.9073 4.2741 0.0072 9 6 5.4414 5.6690 0.0032 10 6 6.7563 6.0522 -0.6840 11 6 7.3794 7.3556 -0.1802 12 1 7.2509 7.4260 0.8999 13 6 6.6906 8.5440 -0.8542 14 7 8.8080 7.3711 -0.5041 15 6 9.6577 8.1151 0.2315 16 8 9.2397 8.7712 1.1617 17 6 11.1274 8.1305 -0.1015 18 16 11.9975 9.2137 1.0588 19 6 13.6444 9.0491 0.4547 20 1 13.8469 8.4147 -0.3955 21 6 14.6817 9.7341 1.0721 22 7 14.4351 10.5070 2.1087 23 14 16.4280 9.5592 0.4321 24 1 16.4380 8.6398 -0.7339 25 1 16.9385 10.8904 0.0167 26 1 17.2954 9.0089 1.5044 27 6 7.2840 4.7912 0.0143 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8340 0.9764 -0.8891 34 1 3.8333 0.9767 0.8908 35 1 3.4222 3.4216 0.8911 36 1 3.4230 3.4221 -0.8889 37 1 4.5633 5.8315 -0.6218 38 1 5.3333 6.0935 1.0013 39 1 6.7258 5.9813 -1.7713 40 1 5.6249 8.5234 -0.6263 41 1 7.1236 9.4730 -0.4834 42 1 6.8327 8.4821 -1.9332 43 1 9.1424 6.8460 -1.2479 44 1 11.5281 7.1197 -0.0245 45 1 11.2660 8.4999 -1.1175 46 1 15.1600 10.9860 2.5400 47 1 7.6718 4.9796 1.0154 48 1 7.9698 4.2082 -0.6004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001726087842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:17 Heat of formation + Delta-G solvation = -93.158697 kcal Electronic energy + Delta-G solvation = -26599.211089 eV Core-core repulsion = 22588.672891 eV Total energy + Delta-G solvation = -4010.538198 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.06194 -39.44184 -38.68778 -38.00306 -35.09653 -33.00692 -32.44202 -31.70425 -30.86324 -29.18420 -28.48135 -26.40112 -25.50260 -24.65117 -23.24999 -22.99529 -20.92536 -20.38103 -19.30175 -17.96860 -17.75343 -17.01214 -16.71503 -16.61166 -16.34242 -15.96196 -15.57664 -15.00114 -14.82099 -14.79944 -14.69794 -14.24487 -14.01666 -13.71725 -13.37452 -13.22509 -13.00938 -12.86321 -12.80068 -12.65597 -12.56226 -12.32626 -12.21699 -12.02007 -11.78122 -11.56772 -11.51803 -11.18852 -11.07879 -11.03170 -10.97498 -10.76250 -10.23204 -10.05906 -9.81737 -9.43312 -9.15169 -9.09070 -8.96411 -8.25120 -6.51475 -6.23222 -3.93684 2.17416 2.30751 2.94330 3.04833 3.20803 3.22051 3.26376 3.30790 3.58055 3.98715 4.13408 4.19162 4.34732 4.45079 4.53963 4.58649 4.60320 4.77195 4.77883 4.91186 4.94564 4.97738 5.07299 5.10171 5.12325 5.18209 5.20131 5.22775 5.32138 5.32526 5.33880 5.43039 5.44798 5.51209 5.64012 5.64308 5.71651 5.86727 5.93794 6.11901 6.13988 6.58311 6.71032 7.28441 7.58737 7.65507 7.72012 8.34162 8.56840 9.22588 10.84263 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026440 B = 0.001515 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.757366 B =18482.454670 C =19132.709641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.058 3.942 3 O -0.393 6.393 4 C 0.078 3.922 5 C -0.132 4.132 6 C 0.547 3.453 7 O -0.540 6.540 8 N -0.648 5.648 9 C 0.110 3.890 10 C -0.134 4.134 11 C 0.157 3.843 12 H 0.093 0.907 13 C -0.163 4.163 14 N -0.735 5.735 15 C 0.535 3.465 16 O -0.516 6.516 17 C -0.154 4.154 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.868 5.868 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.111 3.889 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.049 0.951 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.084 0.916 38 H 0.094 0.906 39 H 0.111 0.889 40 H 0.063 0.937 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.398 0.602 44 H 0.090 0.910 45 H 0.090 0.910 46 H 0.268 0.732 47 H 0.091 0.909 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.478 -15.774 -8.115 31.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 O -0.313 6.313 4 C 0.001 3.999 5 C -0.172 4.172 6 C 0.337 3.663 7 O -0.418 6.418 8 N -0.384 5.384 9 C -0.013 4.013 10 C -0.154 4.154 11 C 0.051 3.949 12 H 0.111 0.889 13 C -0.222 4.222 14 N -0.389 5.389 15 C 0.321 3.679 16 O -0.390 6.390 17 C -0.305 4.305 18 S 0.166 5.834 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.744 3.256 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.011 4.011 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.121 0.879 36 H 0.120 0.880 37 H 0.103 0.897 38 H 0.112 0.888 39 H 0.129 0.871 40 H 0.082 0.918 41 H 0.086 0.914 42 H 0.076 0.924 43 H 0.232 0.768 44 H 0.108 0.892 45 H 0.108 0.892 46 H 0.078 0.922 47 H 0.109 0.891 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -26.971 -15.171 -6.406 31.602 hybrid contribution 1.967 -1.273 -1.820 2.966 sum -25.005 -16.444 -8.226 31.037 Atomic orbital electron populations 1.21751 0.93586 1.02359 1.03173 1.22466 0.95568 0.83405 1.00365 1.87800 1.20969 1.26953 1.95599 1.22099 0.80832 0.95151 1.01840 1.21388 0.91791 0.98270 1.05751 1.19949 0.89805 0.80985 0.75538 1.90744 1.65468 1.35211 1.50331 1.49560 1.10438 1.04909 1.73523 1.23003 0.97689 0.79240 1.01395 1.23262 0.96583 0.94189 1.01344 1.20746 0.80664 0.92579 1.00902 0.88939 1.22173 1.00280 0.98915 1.00790 1.46040 1.06967 1.50447 1.35466 1.20300 0.87803 0.78219 0.81592 1.90700 1.78416 1.41124 1.28763 1.23541 0.94183 1.06382 1.06398 1.85387 1.02528 1.56956 1.38510 1.22908 0.92680 1.33629 1.19126 0.90879 1.24983 0.99379 0.94487 0.94680 1.70023 1.32869 1.27430 1.19977 0.86125 0.82536 0.78114 0.78780 1.19610 1.20565 1.20566 1.23033 0.85138 0.91499 1.01472 0.91797 0.91814 0.91005 0.93245 0.93223 0.92358 0.92357 0.87949 0.88016 0.89731 0.88836 0.87086 0.91772 0.91358 0.92396 0.76797 0.89211 0.89218 0.92230 0.89082 0.90036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 10.28 37.16 0.38 -0.36 16 2 C 0.06 0.37 6.66 37.16 0.25 0.62 16 3 O -0.39 -3.34 10.34 -35.23 -0.36 -3.71 16 4 C 0.08 0.65 5.23 37.15 0.19 0.84 16 5 C -0.13 -0.96 5.90 -27.89 -0.16 -1.12 16 6 C 0.55 5.59 8.08 -10.99 -0.09 5.50 16 7 O -0.54 -7.69 16.76 5.56 0.09 -7.60 16 8 N -0.65 -5.56 3.69 -185.38 -0.68 -6.24 16 9 C 0.11 0.62 7.98 -8.64 -0.07 0.55 16 10 C -0.13 -0.86 3.47 -90.24 -0.31 -1.18 16 11 C 0.16 1.43 2.35 -67.93 -0.16 1.27 16 12 H 0.09 1.01 7.45 -51.92 -0.39 0.62 16 13 C -0.16 -1.40 9.48 37.16 0.35 -1.05 16 14 N -0.73 -8.33 4.96 -53.81 -0.27 -8.60 16 15 C 0.53 9.12 7.81 -10.98 -0.09 9.03 16 16 O -0.52 -10.85 15.52 5.56 0.09 -10.76 16 17 C -0.15 -2.97 6.16 36.01 0.22 -2.74 16 18 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 19 C -0.54 -15.05 9.50 30.94 0.29 -14.76 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.93 13.22 55.49 0.73 -25.20 16 23 Si 0.92 21.26 29.55 -169.99 -5.02 16.23 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 27 C 0.11 0.95 8.08 -8.51 -0.07 0.88 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 34 H 0.06 0.51 8.10 -51.93 -0.42 0.09 16 35 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.09 0.47 8.02 -51.93 -0.42 0.06 16 39 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 42 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.40 3.49 8.60 -40.82 -0.35 3.14 16 44 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 45 H 0.09 1.59 8.14 -51.92 -0.42 1.17 16 46 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 47 H 0.09 0.85 8.10 -51.93 -0.42 0.43 16 48 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 419.02 15.07 6.31 6.31 Total: -1.00 -36.72 419.02 -8.98 -45.70 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -8.30 Total: -1.79 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: 0.65 Total: -0.53 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: -0.22 Total: -40.04 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.18 Total: -22.07 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -36.72 -8.98 -45.70 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001726087842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.460 kcal (2) G-P(sol) polarization free energy of solvation -36.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds