Wall clock time and date at job start Sat Apr 11 2020 07:13:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42901 * 109.47214 * 2 1 4 4 C 1.42894 * 114.00120 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47267 * 180.02562 * 4 3 2 6 6 C 1.50697 * 109.47501 * 180.02562 * 5 4 3 7 7 O 1.21280 * 119.99932 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00561 * 180.27580 * 6 5 4 9 9 C 1.47068 * 136.05297 * 359.35238 * 8 6 5 10 10 C 1.53236 * 88.08297 * 207.20540 * 9 8 6 11 11 C 1.52998 * 114.50734 * 220.45802 * 10 9 8 12 12 H 1.09008 * 109.46990 * 38.89800 * 11 10 9 13 13 C 1.53002 * 109.46967 * 278.90422 * 11 10 9 14 14 N 1.46495 * 109.47472 * 158.89911 * 11 10 9 15 15 C 1.34779 * 120.00188 * 204.99862 * 14 11 10 16 16 O 1.21273 * 120.00021 * 0.02562 * 15 14 11 17 17 C 1.50699 * 119.99605 * 179.97438 * 15 14 11 18 18 S 1.81011 * 109.46791 * 180.02562 * 17 15 14 19 19 C 1.76199 * 99.99855 * 180.02562 * 18 17 15 20 20 H 1.07999 * 120.00153 * 359.97438 * 19 18 17 21 21 C 1.38797 * 119.99729 * 180.02562 * 19 18 17 22 22 N 1.31628 * 120.00298 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99971 * 179.97438 * 21 19 18 24 24 H 1.48495 * 109.47185 * 0.02562 * 23 21 19 25 25 H 1.48506 * 109.46741 * 120.00103 * 23 21 19 26 26 H 1.48490 * 109.47519 * 239.99820 * 23 21 19 27 27 C 1.47065 * 136.06161 * 179.72263 * 8 6 5 28 28 H 1.09003 * 109.46741 * 299.99653 * 1 2 3 29 29 H 1.08993 * 109.47450 * 59.99848 * 1 2 3 30 30 H 1.09003 * 109.46863 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47158 * 239.99694 * 2 1 3 32 32 H 1.09002 * 109.47325 * 119.99932 * 2 1 3 33 33 H 1.08999 * 109.47105 * 59.99703 * 4 3 2 34 34 H 1.09003 * 109.47214 * 299.99775 * 4 3 2 35 35 H 1.08999 * 109.47379 * 59.99774 * 5 4 3 36 36 H 1.09003 * 109.47206 * 299.99708 * 5 4 3 37 37 H 1.09001 * 113.46333 * 321.93676 * 9 8 6 38 38 H 1.08995 * 113.46862 * 92.37158 * 9 8 6 39 39 H 1.08999 * 114.02293 * 87.71145 * 10 9 8 40 40 H 1.08996 * 109.47481 * 59.09627 * 13 11 10 41 41 H 1.08997 * 109.47148 * 179.10312 * 13 11 10 42 42 H 1.09003 * 109.46492 * 299.09541 * 13 11 10 43 43 H 0.97001 * 119.99873 * 24.99701 * 14 11 10 44 44 H 1.09004 * 109.47505 * 299.99918 * 17 15 14 45 45 H 1.08993 * 109.47400 * 60.00505 * 17 15 14 46 46 H 0.97001 * 120.00253 * 180.02562 * 22 21 19 47 47 H 1.09003 * 113.46662 * 267.62184 * 27 8 6 48 48 H 1.08995 * 113.46770 * 38.00036 * 27 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4601 0.0006 5 6 3.8254 2.9383 0.0012 6 6 5.3276 3.0574 0.0012 7 8 6.0151 2.0582 0.0012 8 7 5.9073 4.2741 0.0072 9 6 5.4414 5.6690 0.0032 10 6 6.7563 6.0522 -0.6840 11 6 7.3794 7.3556 -0.1802 12 1 7.2509 7.4260 0.8999 13 6 6.6906 8.5440 -0.8542 14 7 8.8080 7.3711 -0.5041 15 6 9.6577 8.1151 0.2315 16 8 9.2397 8.7712 1.1617 17 6 11.1274 8.1305 -0.1015 18 16 11.9975 9.2137 1.0588 19 6 13.6444 9.0491 0.4547 20 1 13.8469 8.4147 -0.3955 21 6 14.6817 9.7341 1.0721 22 7 14.4351 10.5070 2.1087 23 14 16.4280 9.5592 0.4321 24 1 16.4380 8.6398 -0.7339 25 1 16.9385 10.8904 0.0167 26 1 17.2954 9.0089 1.5044 27 6 7.2840 4.7912 0.0143 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 3.8340 0.9764 -0.8891 34 1 3.8333 0.9767 0.8908 35 1 3.4222 3.4216 0.8911 36 1 3.4230 3.4221 -0.8889 37 1 4.5633 5.8315 -0.6218 38 1 5.3333 6.0935 1.0013 39 1 6.7258 5.9813 -1.7713 40 1 5.6249 8.5234 -0.6263 41 1 7.1236 9.4730 -0.4834 42 1 6.8327 8.4821 -1.9332 43 1 9.1424 6.8460 -1.2479 44 1 11.5281 7.1197 -0.0245 45 1 11.2660 8.4999 -1.1175 46 1 15.1600 10.9860 2.5400 47 1 7.6718 4.9796 1.0154 48 1 7.9698 4.2082 -0.6004 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001726087842.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:16 Heat of formation + Delta-G solvation = -119.737413 kcal Electronic energy + Delta-G solvation = -26600.363629 eV Core-core repulsion = 22588.672891 eV Total energy + Delta-G solvation = -4011.690738 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.77932 -40.56703 -39.50051 -38.72592 -36.14622 -34.57794 -33.60304 -32.75429 -31.48097 -30.20175 -29.46188 -27.65720 -26.97693 -25.36557 -23.74812 -23.68935 -21.73688 -21.56076 -19.99482 -19.78142 -18.49380 -17.83343 -17.73907 -17.40287 -17.26243 -16.87601 -16.64816 -16.39114 -16.33130 -15.91344 -15.39839 -15.31621 -14.96888 -14.67484 -14.50679 -14.37579 -14.00146 -13.87351 -13.55649 -13.22077 -13.21204 -13.16208 -13.13325 -12.96667 -12.91150 -12.76707 -12.67668 -12.53725 -12.07515 -12.04996 -11.90885 -11.69228 -11.61625 -11.15342 -11.07714 -10.82986 -10.64355 -10.25223 -10.07529 -9.82976 -8.64439 -8.34388 -6.11398 1.28539 1.41116 1.44728 1.48022 1.58592 1.64655 1.67945 2.24990 2.30295 2.66760 3.00080 3.24498 3.37379 3.52437 3.70375 3.86932 3.96955 4.00076 4.07961 4.15378 4.16129 4.31099 4.33628 4.38610 4.44733 4.46552 4.48300 4.52983 4.55071 4.59537 4.64474 4.70985 4.75949 4.79983 4.87088 4.91248 5.02793 5.06581 5.22398 5.27118 5.41819 5.42958 5.57952 6.14497 6.20635 6.56525 6.61871 6.97594 7.07609 7.31455 8.74995 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.026440 B = 0.001515 C = 0.001463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1058.757366 B =18482.454670 C =19132.709641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.049 3.951 3 O -0.404 6.404 4 C 0.079 3.921 5 C -0.122 4.122 6 C 0.542 3.458 7 O -0.591 6.591 8 N -0.650 5.650 9 C 0.114 3.886 10 C -0.112 4.112 11 C 0.157 3.843 12 H 0.074 0.926 13 C -0.158 4.158 14 N -0.710 5.710 15 C 0.538 3.462 16 O -0.562 6.562 17 C -0.132 4.132 18 S -0.150 6.150 19 C -0.546 4.546 20 H 0.082 0.918 21 C 0.015 3.985 22 N -0.911 5.911 23 Si 0.996 3.004 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.275 1.275 27 C 0.099 3.901 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.118 0.882 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.101 0.899 39 H 0.134 0.866 40 H 0.092 0.908 41 H 0.032 0.968 42 H 0.073 0.927 43 H 0.415 0.585 44 H 0.107 0.893 45 H 0.109 0.891 46 H 0.271 0.729 47 H 0.078 0.922 48 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.841 -16.589 -10.412 34.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.027 4.027 3 O -0.324 6.324 4 C 0.002 3.998 5 C -0.161 4.161 6 C 0.333 3.667 7 O -0.472 6.472 8 N -0.384 5.384 9 C -0.008 4.008 10 C -0.131 4.131 11 C 0.052 3.948 12 H 0.092 0.908 13 C -0.217 4.217 14 N -0.363 5.363 15 C 0.323 3.677 16 O -0.440 6.440 17 C -0.284 4.284 18 S 0.077 5.923 19 C -0.694 4.694 20 H 0.100 0.900 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.818 3.182 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.024 4.024 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.107 0.893 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.136 0.864 38 H 0.119 0.881 39 H 0.152 0.848 40 H 0.111 0.889 41 H 0.051 0.949 42 H 0.092 0.908 43 H 0.252 0.748 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.080 0.920 47 H 0.096 0.904 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -28.377 -15.992 -8.747 33.727 hybrid contribution 2.279 -1.087 -1.132 2.767 sum -26.098 -17.078 -9.880 32.717 Atomic orbital electron populations 1.21761 0.92387 1.03443 1.02950 1.22676 0.96589 0.82685 1.00777 1.87779 1.20776 1.28191 1.95619 1.22037 0.80882 0.95964 1.00924 1.21346 0.89538 0.97751 1.07466 1.20477 0.90837 0.80699 0.74658 1.90718 1.66715 1.36988 1.52790 1.49646 1.10690 1.05689 1.72367 1.23195 0.98218 0.76943 1.02423 1.23128 0.96519 0.91136 1.02339 1.20898 0.79030 0.94622 1.00276 0.90766 1.22133 1.01629 0.96463 1.01426 1.45803 1.07564 1.48459 1.34500 1.19934 0.87434 0.78662 0.81633 1.90691 1.78845 1.43495 1.30986 1.23400 0.95008 1.05156 1.04793 1.85536 1.04166 1.60107 1.42483 1.23243 0.93097 1.33725 1.19310 0.90035 1.26082 1.04298 0.93872 0.94740 1.70182 1.34438 1.28596 1.21556 0.84941 0.76268 0.78475 0.78493 1.18093 1.19900 1.20046 1.23101 0.85519 0.92701 1.01066 0.92081 0.91908 0.89317 0.92739 0.92977 0.93128 0.93593 0.86422 0.85787 0.86391 0.88138 0.84777 0.88894 0.94886 0.90792 0.74827 0.87514 0.87323 0.92022 0.90401 0.90685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 10.28 71.98 0.74 -0.51 16 2 C 0.05 0.58 6.66 71.98 0.48 1.06 16 3 O -0.40 -6.40 10.34 -148.98 -1.54 -7.94 16 4 C 0.08 1.26 5.23 71.98 0.38 1.64 16 5 C -0.12 -1.52 5.90 29.84 0.18 -1.34 16 6 C 0.54 10.45 8.08 87.66 0.71 11.15 16 7 O -0.59 -16.99 16.76 -3.03 -0.05 -17.04 16 8 N -0.65 -9.81 3.69 -858.82 -3.17 -12.98 16 9 C 0.11 0.87 7.98 83.09 0.66 1.53 16 10 C -0.11 -1.08 3.47 -10.55 -0.04 -1.12 16 11 C 0.16 2.52 2.35 44.99 0.11 2.63 16 12 H 0.07 1.55 7.45 -2.38 -0.02 1.53 16 13 C -0.16 -2.31 9.48 71.98 0.68 -1.63 16 14 N -0.71 -14.85 4.96 -442.54 -2.19 -17.05 16 15 C 0.54 18.17 7.81 87.66 0.68 18.85 16 16 O -0.56 -24.24 15.52 -3.01 -0.05 -24.28 16 17 C -0.13 -5.02 6.16 71.24 0.44 -4.58 16 18 S -0.15 -8.19 20.57 -56.49 -1.16 -9.35 16 19 C -0.55 -30.93 9.50 67.95 0.65 -30.29 16 20 H 0.08 4.30 7.80 -2.91 -0.02 4.28 16 21 C 0.01 0.84 5.49 84.86 0.47 1.31 16 22 N -0.91 -55.71 13.22 21.65 0.29 -55.42 16 23 Si 1.00 43.48 29.55 68.60 2.03 45.51 16 24 H -0.26 -10.50 7.11 99.48 0.71 -9.79 16 25 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 27 C 0.10 1.55 8.08 83.18 0.67 2.22 16 28 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 29 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.09 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.87 8.10 -2.39 -0.02 0.85 16 34 H 0.05 0.83 8.10 -2.39 -0.02 0.81 16 35 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.12 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.10 0.70 8.02 -2.39 -0.02 0.68 16 39 H 0.13 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.41 6.10 8.60 -92.71 -0.80 5.30 16 44 H 0.11 3.68 8.14 -2.39 -0.02 3.66 16 45 H 0.11 3.70 8.14 -2.40 -0.02 3.68 16 46 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 47 H 0.08 1.43 8.10 -2.39 -0.02 1.41 16 48 H 0.07 1.27 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -84.30 419.02 1.09 -83.21 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 0.14 Total: 14.43 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 6.80 Total: 0.92 kcal Atomic # 7 Polarization: -80.37 SS G_CDS: -5.08 Total: -85.45 kcal Atomic # 8 Polarization: -47.63 SS G_CDS: -1.64 Total: -49.27 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Atomic # 16 Polarization: -8.19 SS G_CDS: -1.16 Total: -9.35 kcal Total: -84.30 1.09 -83.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001726087842.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.532 kcal (2) G-P(sol) polarization free energy of solvation -84.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds