Wall clock time and date at job start Sat Apr 11 2020 07:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34140 * 125.13732 * 2 1 4 4 C 1.37966 * 107.94108 * 179.76988 * 3 2 1 5 5 C 1.47209 * 126.81687 * 180.25848 * 4 3 2 6 6 O 1.21637 * 120.00094 * 179.97438 * 5 4 3 7 7 N 1.34777 * 120.00343 * 359.97438 * 5 4 3 8 8 C 1.47027 * 125.64418 * 0.02562 * 7 5 4 9 9 C 1.54317 * 107.26976 * 181.02492 * 8 7 5 10 10 C 1.55162 * 102.94258 * 22.19592 * 9 8 7 11 11 H 1.08998 * 110.99968 * 82.61132 * 10 9 8 12 12 C 1.53006 * 111.00395 * 206.42049 * 10 9 8 13 13 N 1.46500 * 109.47058 * 185.00122 * 12 10 9 14 14 C 1.36933 * 120.00151 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99408 * 359.97438 * 14 13 12 16 16 C 1.38807 * 119.99970 * 180.02562 * 14 13 12 17 17 N 1.31631 * 119.99618 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00211 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47070 * 90.00413 * 18 16 14 20 20 H 1.48508 * 109.47337 * 210.00063 * 18 16 14 21 21 H 1.48501 * 109.47289 * 330.00054 * 18 16 14 22 22 C 1.47424 * 125.65292 * 179.71551 * 7 5 4 23 23 C 1.46764 * 106.36660 * 0.23224 * 4 3 2 24 24 C 1.47657 * 126.54065 * 179.97438 * 23 4 3 25 25 C 1.36022 * 125.93453 * 144.99815 * 24 23 4 26 26 C 1.40902 * 106.73524 * 180.02562 * 25 24 23 27 27 C 1.34759 * 107.04105 * 0.02562 * 26 25 24 28 28 O 1.34301 * 108.68077 * 359.73379 * 27 26 25 29 29 N 1.31584 * 106.91699 * 359.97438 * 23 4 3 30 30 H 1.08991 * 109.47143 * 89.99730 * 1 2 3 31 31 H 1.08994 * 109.46946 * 209.99852 * 1 2 3 32 32 H 1.09005 * 109.46665 * 329.99685 * 1 2 3 33 33 H 1.08002 * 126.03258 * 0.04350 * 3 2 1 34 34 H 1.08995 * 109.88226 * 300.44745 * 8 7 5 35 35 H 1.09008 * 109.87834 * 61.60984 * 8 7 5 36 36 H 1.08997 * 110.72158 * 140.55771 * 9 8 7 37 37 H 1.09003 * 110.72570 * 263.65699 * 9 8 7 38 38 H 1.09000 * 109.46932 * 305.00094 * 12 10 9 39 39 H 1.08995 * 109.46890 * 64.99986 * 12 10 9 40 40 H 0.97004 * 119.99665 * 0.02562 * 13 12 10 41 41 H 0.96999 * 119.99265 * 180.02562 * 17 16 14 42 42 H 1.09007 * 110.36282 * 274.74207 * 22 7 5 43 43 H 1.08997 * 110.36407 * 37.06446 * 22 7 5 44 44 H 1.07995 * 126.63323 * 0.02562 * 25 24 23 45 45 H 1.08001 * 126.48240 * 180.02562 * 26 25 24 46 46 H 1.07994 * 125.65476 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2370 1.0970 0.0000 4 6 3.5550 0.6891 0.0053 5 6 4.7461 1.5541 0.0125 6 8 5.8572 1.0591 0.0171 7 7 4.6056 2.8945 0.0140 8 6 3.3280 3.6221 0.0095 9 6 3.6591 5.1291 -0.0130 10 6 5.0987 5.1601 -0.5911 11 1 5.0837 5.1061 -1.6797 12 6 5.8535 6.4037 -0.1170 13 7 7.1613 6.4614 -0.7745 14 6 8.0190 7.4938 -0.5035 15 1 7.7311 8.2658 0.1947 16 6 9.2580 7.5487 -1.1269 17 7 10.0822 8.5415 -0.8667 18 14 9.7556 6.2139 -2.3351 19 1 9.3273 6.6001 -3.7035 20 1 11.2309 6.0458 -2.3071 21 1 9.1045 4.9345 -1.9551 22 6 5.7073 3.8740 0.0269 23 6 3.5338 -0.7784 0.0029 24 6 4.7072 -1.6746 0.0062 25 6 4.7915 -2.8771 0.6364 26 6 6.0807 -3.3824 0.3755 27 6 6.7133 -2.4733 -0.3922 28 8 5.8788 -1.4456 -0.6179 29 7 2.2695 -1.1430 -0.0028 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.8884 2.1192 0.0007 34 1 2.7528 3.3556 -0.8771 35 1 2.7607 3.3805 0.9084 36 1 2.9700 5.6657 -0.6652 37 1 3.6363 5.5442 0.9947 38 1 5.2799 7.2953 -0.3701 39 1 5.9916 6.3550 0.9631 40 1 7.4197 5.7681 -1.4019 41 1 10.9478 8.5800 -1.3027 42 1 6.0369 4.0607 1.0491 43 1 6.5386 3.5179 -0.5816 44 1 4.0196 -3.3526 1.2233 45 1 6.4854 -4.3209 0.7248 46 1 7.7221 -2.5594 -0.7678 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731659640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:23 Heat of formation + Delta-G solvation = 94.225480 kcal Electronic energy + Delta-G solvation = -29662.068192 eV Core-core repulsion = 25556.504381 eV Total energy + Delta-G solvation = -4105.563811 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.53849 -41.47088 -39.69046 -37.48206 -34.87548 -34.08896 -32.97336 -32.48353 -31.12840 -30.53276 -29.85611 -28.87583 -27.10443 -25.65828 -24.05314 -22.75078 -22.23909 -21.73715 -21.26639 -20.50193 -20.10283 -19.57206 -17.69480 -17.54324 -17.09811 -16.43644 -16.29627 -16.01820 -15.74438 -15.35254 -14.94668 -14.66150 -14.34352 -14.18483 -13.76354 -13.69074 -13.35379 -13.21673 -12.96217 -12.90151 -12.78419 -12.71359 -12.55276 -12.49860 -12.18587 -11.84991 -11.72191 -11.36806 -10.93824 -10.67274 -10.66275 -10.50570 -10.30595 -10.10243 -9.94455 -9.83382 -9.56985 -9.12111 -8.88485 -8.60694 -8.31533 -7.22461 -5.75160 -3.11076 0.98616 1.18118 1.71935 2.15187 2.61376 2.87530 3.04006 3.39840 3.41792 3.46650 3.49847 4.01788 4.06128 4.38886 4.44940 4.51862 4.60678 4.62387 4.77928 4.82124 4.88715 4.90215 4.92310 4.96845 5.10861 5.16249 5.25873 5.44763 5.52107 5.56009 5.75102 5.75994 5.77481 5.81544 5.84414 5.89229 6.01952 6.16234 6.19760 6.28561 6.36031 6.41335 6.59334 6.70778 6.93918 7.18087 7.55910 7.99971 8.29710 8.43749 9.22455 9.95065 10.14019 11.43113 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011953 B = 0.002875 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.008214 B = 9735.209050 C =11764.643602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.361 5.361 3 C 0.090 3.910 4 C -0.264 4.264 5 C 0.601 3.399 6 O -0.523 6.523 7 N -0.617 5.617 8 C 0.093 3.907 9 C -0.124 4.124 10 C -0.110 4.110 11 H 0.085 0.915 12 C 0.169 3.831 13 N -0.757 5.757 14 C -0.245 4.245 15 H 0.090 0.910 16 C 0.005 3.995 17 N -0.934 5.934 18 Si 0.882 3.118 19 H -0.284 1.284 20 H -0.290 1.290 21 H -0.275 1.275 22 C 0.117 3.883 23 C 0.197 3.803 24 C 0.055 3.945 25 C -0.170 4.170 26 C -0.225 4.225 27 C -0.016 4.016 28 O -0.134 6.134 29 N -0.268 5.268 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.199 0.801 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.082 0.918 38 H 0.033 0.967 39 H 0.030 0.970 40 H 0.361 0.639 41 H 0.259 0.741 42 H 0.074 0.926 43 H 0.080 0.920 44 H 0.150 0.850 45 H 0.151 0.849 46 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.484 -20.776 2.568 31.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.141 5.141 3 C -0.058 4.058 4 C -0.279 4.279 5 C 0.390 3.610 6 O -0.399 6.399 7 N -0.352 5.352 8 C -0.030 4.030 9 C -0.163 4.163 10 C -0.130 4.130 11 H 0.104 0.896 12 C 0.042 3.958 13 N -0.402 5.402 14 C -0.375 4.375 15 H 0.108 0.892 16 C -0.190 4.190 17 N -0.582 5.582 18 Si 0.712 3.288 19 H -0.211 1.211 20 H -0.217 1.217 21 H -0.201 1.201 22 C -0.005 4.005 23 C 0.030 3.970 24 C 0.002 3.998 25 C -0.191 4.191 26 C -0.244 4.244 27 C -0.086 4.086 28 O -0.026 6.026 29 N -0.091 5.091 30 H 0.100 0.900 31 H 0.113 0.887 32 H 0.113 0.887 33 H 0.215 0.785 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.102 0.898 37 H 0.101 0.899 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.194 0.806 41 H 0.069 0.931 42 H 0.092 0.908 43 H 0.098 0.902 44 H 0.168 0.832 45 H 0.169 0.831 46 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -23.714 -21.612 2.490 32.181 hybrid contribution 0.874 -0.305 -0.754 1.194 sum -22.840 -21.917 1.736 31.702 Atomic orbital electron populations 1.22057 0.73050 1.05236 1.04166 1.48173 1.07265 1.03117 1.55576 1.23763 0.90531 0.94023 0.97460 1.21312 0.92794 0.92412 1.21349 1.16700 0.87645 0.79928 0.76767 1.90856 1.25778 1.73272 1.49960 1.48321 1.08261 1.04594 1.74006 1.22322 0.86957 0.93178 1.00562 1.22653 0.97218 0.93652 1.02737 1.22694 0.94208 0.95310 1.00768 0.89642 1.20564 0.86333 0.93101 0.95824 1.42729 1.15429 1.29260 1.52810 1.19033 0.95447 1.01146 1.21869 0.89187 1.24667 0.96624 0.97762 0.99991 1.69708 1.09625 1.32166 1.46699 0.86576 0.77870 0.82447 0.81863 1.21096 1.21657 1.20103 1.22387 0.89615 0.86724 1.01734 1.20086 0.89199 0.89653 0.98067 1.18475 0.84948 0.94326 1.02013 1.21752 0.98671 0.94616 1.04042 1.21721 0.95190 1.02414 1.05108 1.24266 0.96352 0.86407 1.01587 1.84286 1.20449 1.40588 1.57263 1.77426 1.00302 1.06639 1.24688 0.89979 0.88674 0.88722 0.78451 0.91434 0.91407 0.89754 0.89927 0.94933 0.95166 0.80582 0.93054 0.90774 0.90156 0.83238 0.83121 0.77777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.31 11.39 59.85 0.68 1.00 16 2 N -0.36 -3.11 3.95 -67.65 -0.27 -3.38 16 3 C 0.09 0.80 9.92 -16.64 -0.17 0.64 16 4 C -0.26 -3.53 6.29 -102.91 -0.65 -4.17 16 5 C 0.60 9.60 7.84 -12.62 -0.10 9.50 16 6 O -0.52 -10.38 14.85 -15.18 -0.23 -10.60 16 7 N -0.62 -8.45 3.32 -171.72 -0.57 -9.02 16 8 C 0.09 0.83 4.99 -3.06 -0.02 0.81 16 9 C -0.12 -1.18 6.41 -24.90 -0.16 -1.34 16 10 C -0.11 -1.55 3.06 -88.35 -0.27 -1.82 16 11 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 12 C 0.17 3.06 5.72 -4.04 -0.02 3.04 16 13 N -0.76 -17.81 5.35 -59.91 -0.32 -18.13 16 14 C -0.25 -6.95 10.47 -15.06 -0.16 -7.11 16 15 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 16 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 17 N -0.93 -29.61 13.97 55.49 0.78 -28.84 16 18 Si 0.88 22.62 27.73 -169.99 -4.71 17.90 16 19 H -0.28 -7.19 7.11 56.52 0.40 -6.79 16 20 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 21 H -0.27 -6.75 6.52 56.52 0.37 -6.38 16 22 C 0.12 1.83 6.33 -2.41 -0.02 1.82 16 23 C 0.20 2.79 7.29 -80.68 -0.59 2.20 16 24 C 0.06 0.81 6.74 -36.53 -0.25 0.56 16 25 C -0.17 -2.09 10.85 -39.37 -0.43 -2.52 16 26 C -0.23 -2.44 10.89 -39.81 -0.43 -2.87 16 27 C -0.02 -0.19 12.08 29.50 0.36 0.17 16 28 O -0.13 -2.09 8.76 -15.81 -0.14 -2.23 16 29 N -0.27 -3.27 12.51 34.50 0.43 -2.84 16 30 H 0.08 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.05 8.13 -51.93 -0.42 -0.37 16 33 H 0.20 1.01 4.45 -52.49 -0.23 0.77 16 34 H 0.07 0.47 6.86 -51.93 -0.36 0.11 16 35 H 0.07 0.45 7.02 -51.92 -0.36 0.09 16 36 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.74 8.04 -51.93 -0.42 0.33 16 38 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.03 0.56 7.96 -51.93 -0.41 0.14 16 40 H 0.36 8.45 5.53 -40.82 -0.23 8.22 16 41 H 0.26 7.84 8.31 -40.82 -0.34 7.50 16 42 H 0.07 1.20 7.91 -51.93 -0.41 0.79 16 43 H 0.08 1.47 8.03 -51.93 -0.42 1.05 16 44 H 0.15 1.56 8.06 -52.49 -0.42 1.13 16 45 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 46 H 0.21 1.64 8.06 -52.49 -0.42 1.21 16 LS Contribution 382.17 15.07 5.76 5.76 Total: -1.00 -39.08 382.17 -7.81 -46.89 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.24 Total: 4.52 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: -2.31 Total: -0.03 kcal Atomic # 7 Polarization: -62.25 SS G_CDS: 0.05 Total: -62.20 kcal Atomic # 8 Polarization: -12.47 SS G_CDS: -0.36 Total: -12.83 kcal Atomic # 14 Polarization: 22.62 SS G_CDS: -4.71 Total: 17.90 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -39.08 -7.81 -46.89 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731659640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.113 kcal (2) G-P(sol) polarization free energy of solvation -39.076 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds