Wall clock time and date at job start Sat Apr 11 2020 07:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34140 * 125.13732 * 2 1 4 4 C 1.37966 * 107.94108 * 179.76988 * 3 2 1 5 5 C 1.47209 * 126.81687 * 180.25848 * 4 3 2 6 6 O 1.21637 * 120.00094 * 179.97438 * 5 4 3 7 7 N 1.34777 * 120.00343 * 359.97438 * 5 4 3 8 8 C 1.47027 * 125.64418 * 0.02562 * 7 5 4 9 9 C 1.54317 * 107.26976 * 181.02492 * 8 7 5 10 10 C 1.55162 * 102.94258 * 22.19592 * 9 8 7 11 11 H 1.08998 * 110.99968 * 82.61132 * 10 9 8 12 12 C 1.53006 * 111.00395 * 206.42049 * 10 9 8 13 13 N 1.46500 * 109.47058 * 185.00122 * 12 10 9 14 14 C 1.36933 * 120.00151 * 180.02562 * 13 12 10 15 15 H 1.07998 * 119.99408 * 359.97438 * 14 13 12 16 16 C 1.38807 * 119.99970 * 180.02562 * 14 13 12 17 17 N 1.31631 * 119.99618 * 179.97438 * 16 14 13 18 18 Si 1.86794 * 120.00211 * 359.97438 * 16 14 13 19 19 H 1.48505 * 109.47070 * 90.00413 * 18 16 14 20 20 H 1.48508 * 109.47337 * 210.00063 * 18 16 14 21 21 H 1.48501 * 109.47289 * 330.00054 * 18 16 14 22 22 C 1.47424 * 125.65292 * 179.71551 * 7 5 4 23 23 C 1.46764 * 106.36660 * 0.23224 * 4 3 2 24 24 C 1.47657 * 126.54065 * 179.97438 * 23 4 3 25 25 C 1.36022 * 125.93453 * 144.99815 * 24 23 4 26 26 C 1.40902 * 106.73524 * 180.02562 * 25 24 23 27 27 C 1.34759 * 107.04105 * 0.02562 * 26 25 24 28 28 O 1.34301 * 108.68077 * 359.73379 * 27 26 25 29 29 N 1.31584 * 106.91699 * 359.97438 * 23 4 3 30 30 H 1.08991 * 109.47143 * 89.99730 * 1 2 3 31 31 H 1.08994 * 109.46946 * 209.99852 * 1 2 3 32 32 H 1.09005 * 109.46665 * 329.99685 * 1 2 3 33 33 H 1.08002 * 126.03258 * 0.04350 * 3 2 1 34 34 H 1.08995 * 109.88226 * 300.44745 * 8 7 5 35 35 H 1.09008 * 109.87834 * 61.60984 * 8 7 5 36 36 H 1.08997 * 110.72158 * 140.55771 * 9 8 7 37 37 H 1.09003 * 110.72570 * 263.65699 * 9 8 7 38 38 H 1.09000 * 109.46932 * 305.00094 * 12 10 9 39 39 H 1.08995 * 109.46890 * 64.99986 * 12 10 9 40 40 H 0.97004 * 119.99665 * 0.02562 * 13 12 10 41 41 H 0.96999 * 119.99265 * 180.02562 * 17 16 14 42 42 H 1.09007 * 110.36282 * 274.74207 * 22 7 5 43 43 H 1.08997 * 110.36407 * 37.06446 * 22 7 5 44 44 H 1.07995 * 126.63323 * 0.02562 * 25 24 23 45 45 H 1.08001 * 126.48240 * 180.02562 * 26 25 24 46 46 H 1.07994 * 125.65476 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2370 1.0970 0.0000 4 6 3.5550 0.6891 0.0053 5 6 4.7461 1.5541 0.0125 6 8 5.8572 1.0591 0.0171 7 7 4.6056 2.8945 0.0140 8 6 3.3280 3.6221 0.0095 9 6 3.6591 5.1291 -0.0130 10 6 5.0987 5.1601 -0.5911 11 1 5.0837 5.1061 -1.6797 12 6 5.8535 6.4037 -0.1170 13 7 7.1613 6.4614 -0.7745 14 6 8.0190 7.4938 -0.5035 15 1 7.7311 8.2658 0.1947 16 6 9.2580 7.5487 -1.1269 17 7 10.0822 8.5415 -0.8667 18 14 9.7556 6.2139 -2.3351 19 1 9.3273 6.6001 -3.7035 20 1 11.2309 6.0458 -2.3071 21 1 9.1045 4.9345 -1.9551 22 6 5.7073 3.8740 0.0269 23 6 3.5338 -0.7784 0.0029 24 6 4.7072 -1.6746 0.0062 25 6 4.7915 -2.8771 0.6364 26 6 6.0807 -3.3824 0.3755 27 6 6.7133 -2.4733 -0.3922 28 8 5.8788 -1.4456 -0.6179 29 7 2.2695 -1.1430 -0.0028 30 1 -0.3633 0.0000 -1.0276 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3633 0.8900 0.5139 33 1 1.8884 2.1192 0.0007 34 1 2.7528 3.3556 -0.8771 35 1 2.7607 3.3805 0.9084 36 1 2.9700 5.6657 -0.6652 37 1 3.6363 5.5442 0.9947 38 1 5.2799 7.2953 -0.3701 39 1 5.9916 6.3550 0.9631 40 1 7.4197 5.7681 -1.4019 41 1 10.9478 8.5800 -1.3027 42 1 6.0369 4.0607 1.0491 43 1 6.5386 3.5179 -0.5816 44 1 4.0196 -3.3526 1.2233 45 1 6.4854 -4.3209 0.7248 46 1 7.7221 -2.5594 -0.7678 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731659640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:22 Heat of formation + Delta-G solvation = 66.318209 kcal Electronic energy + Delta-G solvation = -29663.278342 eV Core-core repulsion = 25556.504381 eV Total energy + Delta-G solvation = -4106.773961 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.46848 -42.27526 -40.72701 -38.67653 -36.58804 -34.80361 -34.12931 -33.83610 -32.68071 -31.53179 -30.65210 -30.03113 -27.88200 -26.99610 -25.28459 -23.78122 -23.48521 -22.85153 -22.09363 -21.65511 -21.14533 -20.48486 -19.62409 -18.47388 -18.06947 -17.30359 -17.21245 -17.05087 -16.62721 -16.53731 -16.25535 -15.80013 -15.69907 -15.42376 -14.92351 -14.81090 -14.60823 -14.16318 -13.89984 -13.80272 -13.76870 -13.72584 -13.58493 -13.46026 -13.37965 -13.20110 -12.88617 -12.81377 -12.25617 -12.15800 -11.94356 -11.84178 -11.73638 -11.57852 -11.11148 -11.04925 -10.96258 -10.78688 -9.99096 -9.64685 -9.29147 -9.18969 -8.04195 -5.36204 0.06479 0.41505 1.05101 1.28197 1.35764 1.38631 1.44761 1.71959 1.91168 2.15759 2.37509 2.46058 3.26054 3.29312 3.35488 3.42958 3.62788 3.77364 3.87572 3.98376 4.05286 4.08888 4.15180 4.22637 4.28844 4.41458 4.46261 4.48634 4.54348 4.65068 4.68135 4.75447 4.80078 4.87567 4.91422 4.96918 5.03516 5.08712 5.13458 5.22488 5.31838 5.44511 5.53437 5.75998 5.76395 6.08687 6.20746 6.31822 6.54513 7.07368 7.19791 7.85018 8.00995 9.17422 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.011953 B = 0.002875 C = 0.002379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2342.008214 B = 9735.209050 C =11764.643602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.349 5.349 3 C 0.125 3.875 4 C -0.304 4.304 5 C 0.592 3.408 6 O -0.580 6.580 7 N -0.615 5.615 8 C 0.084 3.916 9 C -0.111 4.111 10 C -0.101 4.101 11 H 0.085 0.915 12 C 0.165 3.835 13 N -0.763 5.763 14 C -0.229 4.229 15 H 0.063 0.937 16 C -0.062 4.062 17 N -0.982 5.982 18 Si 0.947 3.053 19 H -0.274 1.274 20 H -0.296 1.296 21 H -0.263 1.263 22 C 0.118 3.882 23 C 0.171 3.829 24 C 0.021 3.979 25 C -0.173 4.173 26 C -0.221 4.221 27 C -0.033 4.033 28 O -0.168 6.168 29 N -0.285 5.285 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.134 0.866 33 H 0.244 0.756 34 H 0.099 0.901 35 H 0.102 0.898 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.044 0.956 39 H 0.028 0.972 40 H 0.362 0.638 41 H 0.257 0.743 42 H 0.060 0.940 43 H 0.042 0.958 44 H 0.165 0.835 45 H 0.182 0.818 46 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.748 -21.676 2.321 35.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.128 5.128 3 C -0.025 4.025 4 C -0.319 4.319 5 C 0.383 3.617 6 O -0.461 6.461 7 N -0.349 5.349 8 C -0.037 4.037 9 C -0.149 4.149 10 C -0.121 4.121 11 H 0.104 0.896 12 C 0.039 3.961 13 N -0.408 5.408 14 C -0.360 4.360 15 H 0.081 0.919 16 C -0.253 4.253 17 N -0.633 5.633 18 Si 0.776 3.224 19 H -0.200 1.200 20 H -0.223 1.223 21 H -0.188 1.188 22 C -0.005 4.005 23 C 0.004 3.996 24 C -0.031 4.031 25 C -0.194 4.194 26 C -0.240 4.240 27 C -0.102 4.102 28 O -0.062 6.062 29 N -0.108 5.108 30 H 0.117 0.883 31 H 0.117 0.883 32 H 0.152 0.848 33 H 0.259 0.741 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.110 0.890 38 H 0.062 0.938 39 H 0.046 0.954 40 H 0.195 0.805 41 H 0.066 0.934 42 H 0.079 0.921 43 H 0.060 0.940 44 H 0.182 0.818 45 H 0.200 0.800 46 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges -28.096 -22.538 2.253 36.089 hybrid contribution 2.036 0.002 -0.584 2.118 sum -26.061 -22.536 1.669 34.494 Atomic orbital electron populations 1.22615 0.69667 1.07444 1.05986 1.48683 1.08915 1.02149 1.53083 1.24247 0.88647 0.95575 0.94065 1.21175 0.93645 0.91872 1.25199 1.17186 0.87878 0.80650 0.75951 1.90809 1.28064 1.74452 1.52761 1.48334 1.09513 1.03882 1.73142 1.22741 0.85218 0.91997 1.03728 1.22689 0.93960 0.94603 1.03621 1.22529 0.96808 0.92029 1.00704 0.89643 1.20782 0.84361 0.95662 0.95283 1.42839 1.16863 1.27928 1.53193 1.19073 0.95896 1.01145 1.19922 0.91860 1.25417 0.97024 1.00250 1.02619 1.69869 1.10188 1.34564 1.48710 0.85519 0.76984 0.80089 0.79853 1.20017 1.22290 1.18846 1.22182 0.89839 0.88208 1.00306 1.20288 0.89684 0.90348 0.99254 1.18995 0.85304 0.95633 1.03165 1.22074 0.99658 0.94107 1.03584 1.22107 0.94436 1.03191 1.04240 1.25002 0.97279 0.85947 1.01944 1.84256 1.21434 1.42223 1.58264 1.77360 0.99885 1.08556 1.25032 0.88284 0.88323 0.84783 0.74051 0.88324 0.87969 0.86507 0.89031 0.93812 0.95398 0.80485 0.93362 0.92130 0.93953 0.81785 0.80018 0.75098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.15 11.39 127.77 1.46 1.60 16 2 N -0.35 -4.80 3.95 -367.96 -1.45 -6.26 16 3 C 0.12 1.73 9.92 84.28 0.84 2.57 16 4 C -0.30 -7.86 6.29 -18.76 -0.12 -7.98 16 5 C 0.59 19.18 7.84 86.60 0.68 19.86 16 6 O -0.58 -24.60 14.85 15.38 0.23 -24.37 16 7 N -0.62 -16.05 3.32 -815.44 -2.71 -18.76 16 8 C 0.08 1.09 4.99 86.73 0.43 1.52 16 9 C -0.11 -1.59 6.41 31.78 0.20 -1.38 16 10 C -0.10 -2.65 3.06 -9.32 -0.03 -2.68 16 11 H 0.09 2.28 8.14 -2.39 -0.02 2.26 16 12 C 0.17 5.78 5.72 86.38 0.49 6.28 16 13 N -0.76 -35.82 5.35 -343.46 -1.84 -37.66 16 14 C -0.23 -13.21 10.47 84.03 0.88 -12.33 16 15 H 0.06 3.92 8.06 -2.91 -0.02 3.90 16 16 C -0.06 -3.71 5.50 84.86 0.47 -3.25 16 17 N -0.98 -64.03 13.97 21.65 0.30 -63.72 16 18 Si 0.95 47.67 27.73 68.60 1.90 49.58 16 19 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 20 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 21 H -0.26 -12.56 6.52 99.48 0.65 -11.91 16 22 C 0.12 3.70 6.33 86.93 0.55 4.25 16 23 C 0.17 4.89 7.29 43.90 0.32 5.21 16 24 C 0.02 0.65 6.74 24.24 0.16 0.81 16 25 C -0.17 -4.37 10.85 22.41 0.24 -4.12 16 26 C -0.22 -4.76 10.89 22.12 0.24 -4.52 16 27 C -0.03 -0.80 12.08 67.02 0.81 0.01 16 28 O -0.17 -5.64 8.76 13.11 0.11 -5.53 16 29 N -0.29 -6.62 12.51 -44.77 -0.56 -7.18 16 30 H 0.10 -0.06 8.14 -2.39 -0.02 -0.08 16 31 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 32 H 0.13 -0.74 8.13 -2.38 -0.02 -0.76 16 33 H 0.24 0.85 4.45 -2.91 -0.01 0.84 16 34 H 0.10 0.74 6.86 -2.39 -0.02 0.72 16 35 H 0.10 0.71 7.02 -2.38 -0.02 0.69 16 36 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.09 1.21 8.04 -2.39 -0.02 1.19 16 38 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.03 1.01 7.96 -2.39 -0.02 0.99 16 40 H 0.36 16.84 5.53 -92.71 -0.51 16.33 16 41 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 42 H 0.06 2.02 7.91 -2.38 -0.02 2.01 16 43 H 0.04 1.63 8.03 -2.39 -0.02 1.61 16 44 H 0.16 3.42 8.06 -2.91 -0.02 3.39 16 45 H 0.18 2.57 8.06 -2.91 -0.02 2.54 16 46 H 0.23 3.80 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -93.65 382.17 4.06 -89.59 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: 0.45 Total: 18.45 kcal Atomic # 6 Polarization: -1.77 SS G_CDS: 7.63 Total: 5.86 kcal Atomic # 7 Polarization: -127.33 SS G_CDS: -6.26 Total: -133.59 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: 0.34 Total: -29.89 kcal Atomic # 14 Polarization: 47.67 SS G_CDS: 1.90 Total: 49.58 kcal Total: -93.65 4.06 -89.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731659640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.909 kcal (2) G-P(sol) polarization free energy of solvation -93.651 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.591 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds