Wall clock time and date at job start Sat Apr 11 2020 07:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34140 * 125.13731 * 2 1 4 4 C 1.37957 * 107.94100 * 180.13145 * 3 2 1 5 5 C 1.47210 * 126.81995 * 179.83951 * 4 3 2 6 6 O 1.21627 * 120.00635 * 171.80817 * 5 4 3 7 7 N 1.34777 * 119.99759 * 351.79873 * 5 4 3 8 8 C 1.47423 * 125.64774 * 0.98312 * 7 5 4 9 9 C 1.54906 * 104.83270 * 204.17116 * 8 7 5 10 10 C 1.55159 * 101.58188 * 322.98880 * 9 8 7 11 11 C 1.47021 * 125.65075 * 181.03119 * 7 5 4 12 12 H 1.08994 * 110.01226 * 59.40667 * 11 7 5 13 13 C 1.53005 * 109.88214 * 298.31404 * 11 7 5 14 14 N 1.46501 * 109.47073 * 75.83975 * 13 11 7 15 15 C 1.36932 * 120.00016 * 187.36763 * 14 13 11 16 16 H 1.07998 * 120.00370 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99976 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00109 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00069 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47353 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47371 * 300.00152 * 19 17 15 22 22 H 1.48500 * 109.46764 * 60.00519 * 19 17 15 23 23 C 1.46765 * 106.36784 * 359.57309 * 4 3 2 24 24 C 1.47663 * 126.54205 * 180.26170 * 23 4 3 25 25 C 1.36014 * 125.93511 * 145.00149 * 24 23 4 26 26 C 1.40904 * 106.73661 * 179.97438 * 25 24 23 27 27 C 1.34745 * 107.03955 * 359.97438 * 26 25 24 28 28 O 1.34310 * 108.68566 * 359.75748 * 27 26 25 29 29 N 1.31587 * 106.91444 * 0.26635 * 23 4 3 30 30 H 1.08991 * 109.47358 * 270.32911 * 1 2 3 31 31 H 1.09002 * 109.46974 * 30.33100 * 1 2 3 32 32 H 1.09004 * 109.46820 * 150.32838 * 1 2 3 33 33 H 1.08004 * 126.02894 * 359.96235 * 3 2 1 34 34 H 1.09001 * 110.37206 * 85.33259 * 8 7 5 35 35 H 1.08996 * 110.46003 * 323.05285 * 8 7 5 36 36 H 1.09007 * 111.00580 * 204.91240 * 9 8 7 37 37 H 1.09000 * 111.04099 * 81.07655 * 9 8 7 38 38 H 1.09002 * 110.71633 * 277.13643 * 10 9 8 39 39 H 1.09000 * 110.71734 * 153.86779 * 10 9 8 40 40 H 1.08996 * 109.47193 * 315.84117 * 13 11 7 41 41 H 1.08999 * 109.47071 * 195.83727 * 13 11 7 42 42 H 0.97002 * 120.00081 * 7.36043 * 14 13 11 43 43 H 0.97008 * 119.99674 * 0.02562 * 18 17 15 44 44 H 1.08009 * 126.63305 * 359.97438 * 25 24 23 45 45 H 1.07998 * 126.47948 * 179.97438 * 26 25 24 46 46 H 1.07997 * 125.66111 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2371 1.0970 0.0000 4 6 3.5549 0.6891 -0.0030 5 6 4.7461 1.5540 -0.0074 6 8 5.8513 1.0680 0.1403 7 7 4.6121 2.8846 -0.1754 8 6 3.3372 3.6052 -0.3441 9 6 3.7137 4.9070 -1.0944 10 6 5.0865 5.2481 -0.4568 11 6 5.7133 3.8576 -0.2216 12 1 6.3922 3.6141 -1.0387 13 6 6.4730 3.8473 1.1065 14 7 7.3249 2.6572 1.1725 15 6 7.9869 2.3525 2.3318 16 1 7.8814 2.9897 3.1973 17 6 8.7936 1.2246 2.3944 18 7 8.9219 0.4478 1.3398 19 14 9.6973 0.8094 3.9756 20 1 10.4849 -0.4349 3.7837 21 1 10.6114 1.9245 4.3309 22 1 8.7136 0.6080 5.0697 23 6 3.5338 -0.7784 0.0056 24 6 4.7073 -1.6746 0.0114 25 6 4.7938 -2.8723 0.6501 26 6 6.0817 -3.3801 0.3875 27 6 6.7108 -2.4777 -0.3906 28 8 5.8757 -1.4512 -0.6205 29 7 2.2694 -1.1430 0.0070 30 1 -0.3633 0.0059 1.0275 31 1 -0.3633 0.8870 -0.5190 32 1 -0.3633 -0.8930 -0.5087 33 1 1.8884 2.1192 -0.0006 34 1 2.9023 3.8396 0.6275 35 1 2.6406 3.0132 -0.9378 36 1 2.9859 5.6948 -0.8996 37 1 3.8141 4.7268 -2.1647 38 1 4.9526 5.7756 0.4877 39 1 5.6960 5.8346 -1.1443 40 1 5.7614 3.8309 1.9320 41 1 7.0920 4.7416 1.1779 42 1 7.4199 2.0850 0.3950 43 1 8.4528 0.6636 0.5185 44 1 4.0242 -3.3431 1.2439 45 1 6.4877 -4.3158 0.7426 46 1 7.7182 -2.5667 -0.7696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733342520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:29 Heat of formation + Delta-G solvation = 114.747821 kcal Electronic energy + Delta-G solvation = -31566.051269 eV Core-core repulsion = 27461.377374 eV Total energy + Delta-G solvation = -4104.673895 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.92562 -41.06148 -39.48181 -36.79500 -34.42688 -33.67792 -32.39733 -31.97472 -31.14159 -30.02567 -29.28647 -28.37464 -26.59357 -24.85162 -23.48755 -22.53475 -21.97897 -21.41151 -21.17624 -20.61713 -19.51730 -18.88408 -17.13570 -17.04259 -16.49787 -16.28961 -15.93466 -15.73415 -15.27220 -15.06564 -14.45989 -13.99019 -13.95829 -13.75515 -13.39138 -13.20544 -13.10006 -12.91929 -12.89005 -12.68377 -12.43152 -12.31476 -12.25380 -11.95828 -11.81507 -11.50316 -11.13483 -10.87891 -10.78107 -10.59856 -10.49912 -10.24458 -9.86559 -9.76779 -9.33149 -9.08933 -8.76635 -8.65416 -8.53978 -8.08255 -7.72426 -6.50773 -5.69400 -2.63178 1.45407 1.64851 2.11996 2.75461 3.19814 3.32830 3.51818 3.67415 3.73377 3.89500 3.96095 4.36951 4.40305 4.54524 4.65268 4.82761 4.85667 4.91112 4.96722 5.08873 5.22279 5.26282 5.31860 5.43613 5.47800 5.49372 5.50605 5.63307 5.70544 5.83641 5.94857 5.98121 6.04319 6.10256 6.23104 6.32473 6.38218 6.49084 6.56787 6.61826 6.70070 6.86251 6.96673 7.06042 7.40608 7.73910 8.03787 8.13973 8.92522 9.24453 9.78696 10.60909 10.79278 11.81951 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.007959 B = 0.005818 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3517.170246 B = 4811.434401 C = 7463.239868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.367 5.367 3 C 0.075 3.925 4 C -0.250 4.250 5 C 0.586 3.414 6 O -0.457 6.457 7 N -0.615 5.615 8 C 0.089 3.911 9 C -0.132 4.132 10 C -0.124 4.124 11 C 0.133 3.867 12 H 0.072 0.928 13 C 0.153 3.847 14 N -0.729 5.729 15 C -0.329 4.329 16 H 0.051 0.949 17 C -0.040 4.040 18 N -0.939 5.939 19 Si 1.073 2.927 20 H -0.287 1.287 21 H -0.300 1.300 22 H -0.301 1.301 23 C 0.205 3.795 24 C 0.049 3.951 25 C -0.168 4.168 26 C -0.233 4.233 27 C 0.012 3.988 28 O -0.132 6.132 29 N -0.275 5.275 30 H 0.078 0.922 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.196 0.804 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.080 0.920 40 H 0.017 0.983 41 H 0.015 0.985 42 H 0.384 0.616 43 H 0.265 0.735 44 H 0.144 0.856 45 H 0.147 0.853 46 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.767 3.301 -7.547 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.148 5.148 3 C -0.072 4.072 4 C -0.265 4.265 5 C 0.373 3.627 6 O -0.327 6.327 7 N -0.353 5.353 8 C -0.035 4.035 9 C -0.170 4.170 10 C -0.162 4.162 11 C 0.030 3.970 12 H 0.090 0.910 13 C 0.024 3.976 14 N -0.381 5.381 15 C -0.461 4.461 16 H 0.069 0.931 17 C -0.239 4.239 18 N -0.584 5.584 19 Si 0.906 3.094 20 H -0.213 1.213 21 H -0.228 1.228 22 H -0.229 1.229 23 C 0.038 3.962 24 C -0.004 4.004 25 C -0.189 4.189 26 C -0.252 4.252 27 C -0.059 4.059 28 O -0.024 6.024 29 N -0.097 5.097 30 H 0.096 0.904 31 H 0.109 0.891 32 H 0.111 0.889 33 H 0.212 0.788 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.035 0.965 41 H 0.032 0.968 42 H 0.224 0.776 43 H 0.077 0.923 44 H 0.162 0.838 45 H 0.165 0.835 46 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -19.027 1.235 -6.737 20.222 hybrid contribution -0.757 1.674 -0.394 1.879 sum -19.784 2.908 -7.131 21.230 Atomic orbital electron populations 1.21957 0.73637 1.04820 1.03788 1.48093 1.06943 1.03238 1.56489 1.23686 0.90717 0.93679 0.99073 1.21450 0.92777 0.92602 1.19687 1.16742 0.87955 0.79917 0.78114 1.90914 1.24830 1.72127 1.44822 1.48224 1.06826 1.05421 1.74803 1.22580 0.88030 0.93359 0.99490 1.22764 0.97604 0.96592 1.00037 1.22629 0.95972 0.96131 1.01493 1.21850 0.88609 0.86845 0.99718 0.91037 1.20883 0.92338 0.91669 0.92732 1.42715 1.54174 1.26751 1.14426 1.19889 1.24786 1.09843 0.91599 0.93137 1.25443 1.00103 0.94047 1.04350 1.70663 1.45103 1.39624 1.03049 0.83358 0.75775 0.75661 0.74616 1.21274 1.22791 1.22941 1.20125 0.89143 0.89735 0.97240 1.18349 0.85061 0.94238 1.02751 1.21639 0.98617 0.94892 1.03764 1.21596 0.95260 1.02843 1.05467 1.24183 0.95644 0.85403 1.00655 1.84224 1.20409 1.40773 1.56973 1.77390 1.00452 1.06413 1.25478 0.90364 0.89115 0.88923 0.78775 0.91725 0.90738 0.90153 0.90687 0.90389 0.90183 0.96545 0.96787 0.77586 0.92278 0.83784 0.83518 0.77924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.62 11.39 59.85 0.68 1.30 16 2 N -0.37 -4.48 3.95 -67.65 -0.27 -4.75 16 3 C 0.08 0.95 9.76 -16.65 -0.16 0.79 16 4 C -0.25 -4.50 6.26 -102.91 -0.64 -5.14 16 5 C 0.59 12.20 7.64 -12.62 -0.10 12.10 16 6 O -0.46 -11.85 10.91 -14.02 -0.15 -12.00 16 7 N -0.61 -10.41 3.06 -164.36 -0.50 -10.92 16 8 C 0.09 0.97 5.27 -2.53 -0.01 0.96 16 9 C -0.13 -1.20 7.08 -24.58 -0.17 -1.37 16 10 C -0.12 -1.47 6.44 -24.90 -0.16 -1.63 16 11 C 0.13 2.33 3.06 -66.95 -0.21 2.13 16 12 H 0.07 1.38 8.11 -51.93 -0.42 0.95 16 13 C 0.15 3.44 5.61 -4.04 -0.02 3.42 16 14 N -0.73 -20.68 4.20 -59.91 -0.25 -20.93 16 15 C -0.33 -10.33 9.99 -15.06 -0.15 -10.48 16 16 H 0.05 1.57 7.83 -52.49 -0.41 1.16 16 17 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16 18 N -0.94 -31.14 13.70 55.49 0.76 -30.38 16 19 Si 1.07 28.45 29.92 -169.99 -5.09 23.36 16 20 H -0.29 -7.62 7.11 56.52 0.40 -7.22 16 21 H -0.30 -7.56 7.11 56.52 0.40 -7.16 16 22 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 23 C 0.20 3.91 7.29 -80.68 -0.59 3.33 16 24 C 0.05 1.01 6.69 -36.53 -0.24 0.76 16 25 C -0.17 -3.14 10.85 -39.37 -0.43 -3.56 16 26 C -0.23 -4.15 10.89 -39.81 -0.43 -4.59 16 27 C 0.01 0.23 12.08 29.49 0.36 0.59 16 28 O -0.13 -2.92 8.98 -14.68 -0.13 -3.05 16 29 N -0.27 -4.50 12.51 34.50 0.43 -4.07 16 30 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.09 0.28 8.13 -51.93 -0.42 -0.15 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.20 1.64 4.78 -52.48 -0.25 1.39 16 34 H 0.06 0.64 8.03 -51.93 -0.42 0.22 16 35 H 0.07 0.66 5.33 -51.93 -0.28 0.38 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.90 7.85 -51.93 -0.41 0.49 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.01 0.32 8.09 -51.93 -0.42 -0.10 16 42 H 0.38 11.42 3.95 -40.82 -0.16 11.26 16 43 H 0.27 8.94 6.61 -40.82 -0.27 8.67 16 44 H 0.14 2.36 8.06 -52.48 -0.42 1.94 16 45 H 0.15 2.16 8.06 -52.49 -0.42 1.74 16 46 H 0.20 3.39 8.06 -52.49 -0.42 2.96 16 LS Contribution 376.08 15.07 5.67 5.67 Total: -1.00 -41.89 376.08 -7.97 -49.86 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -6.06 Total: 9.99 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: -2.38 Total: -2.79 kcal Atomic # 7 Polarization: -71.21 SS G_CDS: 0.17 Total: -71.04 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -0.28 Total: -15.05 kcal Atomic # 14 Polarization: 28.45 SS G_CDS: -5.09 Total: 23.36 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -41.89 -7.97 -49.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733342520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.611 kcal (2) G-P(sol) polarization free energy of solvation -41.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 122.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.971 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 114.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds