Wall clock time and date at job start Sat Apr 11 2020 07:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34140 * 125.13731 * 2 1 4 4 C 1.37957 * 107.94100 * 180.13145 * 3 2 1 5 5 C 1.47210 * 126.81995 * 179.83951 * 4 3 2 6 6 O 1.21627 * 120.00635 * 171.80817 * 5 4 3 7 7 N 1.34777 * 119.99759 * 351.79873 * 5 4 3 8 8 C 1.47423 * 125.64774 * 0.98312 * 7 5 4 9 9 C 1.54906 * 104.83270 * 204.17116 * 8 7 5 10 10 C 1.55159 * 101.58188 * 322.98880 * 9 8 7 11 11 C 1.47021 * 125.65075 * 181.03119 * 7 5 4 12 12 H 1.08994 * 110.01226 * 59.40667 * 11 7 5 13 13 C 1.53005 * 109.88214 * 298.31404 * 11 7 5 14 14 N 1.46501 * 109.47073 * 75.83975 * 13 11 7 15 15 C 1.36932 * 120.00016 * 187.36763 * 14 13 11 16 16 H 1.07998 * 120.00370 * 359.97438 * 15 14 13 17 17 C 1.38814 * 119.99976 * 179.97438 * 15 14 13 18 18 N 1.31619 * 120.00109 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00069 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47353 * 179.97438 * 19 17 15 21 21 H 1.48499 * 109.47371 * 300.00152 * 19 17 15 22 22 H 1.48500 * 109.46764 * 60.00519 * 19 17 15 23 23 C 1.46765 * 106.36784 * 359.57309 * 4 3 2 24 24 C 1.47663 * 126.54205 * 180.26170 * 23 4 3 25 25 C 1.36014 * 125.93511 * 145.00149 * 24 23 4 26 26 C 1.40904 * 106.73661 * 179.97438 * 25 24 23 27 27 C 1.34745 * 107.03955 * 359.97438 * 26 25 24 28 28 O 1.34310 * 108.68566 * 359.75748 * 27 26 25 29 29 N 1.31587 * 106.91444 * 0.26635 * 23 4 3 30 30 H 1.08991 * 109.47358 * 270.32911 * 1 2 3 31 31 H 1.09002 * 109.46974 * 30.33100 * 1 2 3 32 32 H 1.09004 * 109.46820 * 150.32838 * 1 2 3 33 33 H 1.08004 * 126.02894 * 359.96235 * 3 2 1 34 34 H 1.09001 * 110.37206 * 85.33259 * 8 7 5 35 35 H 1.08996 * 110.46003 * 323.05285 * 8 7 5 36 36 H 1.09007 * 111.00580 * 204.91240 * 9 8 7 37 37 H 1.09000 * 111.04099 * 81.07655 * 9 8 7 38 38 H 1.09002 * 110.71633 * 277.13643 * 10 9 8 39 39 H 1.09000 * 110.71734 * 153.86779 * 10 9 8 40 40 H 1.08996 * 109.47193 * 315.84117 * 13 11 7 41 41 H 1.08999 * 109.47071 * 195.83727 * 13 11 7 42 42 H 0.97002 * 120.00081 * 7.36043 * 14 13 11 43 43 H 0.97008 * 119.99674 * 0.02562 * 18 17 15 44 44 H 1.08009 * 126.63305 * 359.97438 * 25 24 23 45 45 H 1.07998 * 126.47948 * 179.97438 * 26 25 24 46 46 H 1.07997 * 125.66111 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2371 1.0970 0.0000 4 6 3.5549 0.6891 -0.0030 5 6 4.7461 1.5540 -0.0074 6 8 5.8513 1.0680 0.1403 7 7 4.6121 2.8846 -0.1754 8 6 3.3372 3.6052 -0.3441 9 6 3.7137 4.9070 -1.0944 10 6 5.0865 5.2481 -0.4568 11 6 5.7133 3.8576 -0.2216 12 1 6.3922 3.6141 -1.0387 13 6 6.4730 3.8473 1.1065 14 7 7.3249 2.6572 1.1725 15 6 7.9869 2.3525 2.3318 16 1 7.8814 2.9897 3.1973 17 6 8.7936 1.2246 2.3944 18 7 8.9219 0.4478 1.3398 19 14 9.6973 0.8094 3.9756 20 1 10.4849 -0.4349 3.7837 21 1 10.6114 1.9245 4.3309 22 1 8.7136 0.6080 5.0697 23 6 3.5338 -0.7784 0.0056 24 6 4.7073 -1.6746 0.0114 25 6 4.7938 -2.8723 0.6501 26 6 6.0817 -3.3801 0.3875 27 6 6.7108 -2.4777 -0.3906 28 8 5.8757 -1.4512 -0.6205 29 7 2.2694 -1.1430 0.0070 30 1 -0.3633 0.0059 1.0275 31 1 -0.3633 0.8870 -0.5190 32 1 -0.3633 -0.8930 -0.5087 33 1 1.8884 2.1192 -0.0006 34 1 2.9023 3.8396 0.6275 35 1 2.6406 3.0132 -0.9378 36 1 2.9859 5.6948 -0.8996 37 1 3.8141 4.7268 -2.1647 38 1 4.9526 5.7756 0.4877 39 1 5.6960 5.8346 -1.1443 40 1 5.7614 3.8309 1.9320 41 1 7.0920 4.7416 1.1779 42 1 7.4199 2.0850 0.3950 43 1 8.4528 0.6636 0.5185 44 1 4.0242 -3.3431 1.2439 45 1 6.4877 -4.3158 0.7426 46 1 7.7182 -2.5667 -0.7696 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733342520.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:13:28 Heat of formation + Delta-G solvation = 84.440364 kcal Electronic energy + Delta-G solvation = -31567.365499 eV Core-core repulsion = 27461.377374 eV Total energy + Delta-G solvation = -4105.988125 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.39093 -42.23343 -40.76252 -38.18216 -36.48640 -34.76265 -33.83370 -33.53088 -32.72715 -31.24048 -30.58452 -29.93470 -27.57166 -26.46824 -25.08518 -24.29860 -23.29165 -22.81748 -22.21702 -21.89738 -20.88692 -20.22185 -19.16176 -18.41287 -17.90277 -17.51448 -17.23279 -16.96559 -16.65881 -16.44832 -15.80458 -15.65847 -15.38461 -15.20310 -15.09649 -14.79921 -14.50565 -14.00803 -13.81651 -13.75308 -13.67996 -13.60555 -13.50357 -13.32662 -13.17889 -12.88131 -12.56385 -12.49734 -12.19112 -12.12633 -11.86009 -11.79425 -11.58674 -11.10761 -11.04882 -10.83004 -10.73787 -10.56604 -9.89091 -9.49418 -9.10483 -8.80041 -8.20745 -5.07431 0.12371 0.49004 1.12871 1.33288 1.50964 1.64368 1.77266 1.80140 2.04966 2.24959 2.55568 2.76687 3.34998 3.40005 3.55642 3.60204 3.67923 3.84757 3.98530 4.07092 4.08558 4.16920 4.22168 4.30161 4.36056 4.40950 4.45264 4.48072 4.58673 4.70501 4.72704 4.75444 4.79869 4.88178 4.92685 4.97896 5.01686 5.13790 5.16766 5.19361 5.39650 5.57272 5.60104 5.66339 5.81405 6.13010 6.35980 6.70959 6.75086 7.30110 7.61025 8.33261 8.45083 9.31836 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.007959 B = 0.005818 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3517.170246 B = 4811.434401 C = 7463.239868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.350 5.350 3 C 0.115 3.885 4 C -0.297 4.297 5 C 0.571 3.429 6 O -0.527 6.527 7 N -0.615 5.615 8 C 0.076 3.924 9 C -0.115 4.115 10 C -0.115 4.115 11 C 0.135 3.865 12 H 0.042 0.958 13 C 0.151 3.849 14 N -0.744 5.744 15 C -0.341 4.341 16 H 0.047 0.953 17 C -0.101 4.101 18 N -0.959 5.959 19 Si 1.125 2.875 20 H -0.289 1.289 21 H -0.276 1.276 22 H -0.290 1.290 23 C 0.168 3.832 24 C 0.026 3.974 25 C -0.179 4.179 26 C -0.224 4.224 27 C -0.022 4.022 28 O -0.163 6.163 29 N -0.285 5.285 30 H 0.097 0.903 31 H 0.136 0.864 32 H 0.098 0.902 33 H 0.246 0.754 34 H 0.086 0.914 35 H 0.102 0.898 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.094 0.906 40 H 0.005 0.995 41 H 0.018 0.982 42 H 0.374 0.626 43 H 0.248 0.752 44 H 0.164 0.836 45 H 0.179 0.821 46 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.792 5.531 -7.155 25.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.129 5.129 3 C -0.034 4.034 4 C -0.312 4.312 5 C 0.360 3.640 6 O -0.402 6.402 7 N -0.351 5.351 8 C -0.045 4.045 9 C -0.152 4.152 10 C -0.153 4.153 11 C 0.031 3.969 12 H 0.060 0.940 13 C 0.023 3.977 14 N -0.394 5.394 15 C -0.473 4.473 16 H 0.065 0.935 17 C -0.295 4.295 18 N -0.606 5.606 19 Si 0.951 3.049 20 H -0.215 1.215 21 H -0.202 1.202 22 H -0.217 1.217 23 C 0.003 3.997 24 C -0.027 4.027 25 C -0.200 4.200 26 C -0.243 4.243 27 C -0.091 4.091 28 O -0.056 6.056 29 N -0.109 5.109 30 H 0.115 0.885 31 H 0.154 0.846 32 H 0.117 0.883 33 H 0.261 0.739 34 H 0.104 0.896 35 H 0.120 0.880 36 H 0.142 0.858 37 H 0.099 0.901 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.023 0.977 41 H 0.036 0.964 42 H 0.213 0.787 43 H 0.059 0.941 44 H 0.182 0.818 45 H 0.196 0.804 46 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -23.148 3.525 -6.364 24.264 hybrid contribution 0.284 1.066 -0.534 1.226 sum -22.864 4.591 -6.897 24.319 Atomic orbital electron populations 1.22600 0.69644 1.07452 1.05862 1.48672 1.08848 1.02038 1.53390 1.24212 0.88516 0.95437 0.95253 1.21363 0.94076 0.91930 1.23830 1.17360 0.88094 0.81285 0.77225 1.90870 1.27378 1.73696 1.48241 1.48296 1.09062 1.04466 1.73282 1.23048 0.85837 0.94095 1.01549 1.22795 0.96238 0.96427 0.99786 1.22628 0.97703 0.92177 1.02785 1.21790 0.88977 0.90639 0.95534 0.94001 1.21082 0.91777 0.89439 0.95429 1.42952 1.54959 1.28281 1.13245 1.20240 1.24797 1.09756 0.92511 0.93482 1.27015 1.01387 0.94262 1.06791 1.70773 1.45981 1.40577 1.03221 0.82694 0.75143 0.75946 0.71151 1.21492 1.20246 1.21735 1.20238 0.89543 0.90530 0.99432 1.19029 0.85346 0.95400 1.02885 1.21976 0.99431 0.94696 1.03883 1.21981 0.94755 1.03385 1.04145 1.24655 0.96462 0.85771 1.02244 1.84193 1.21490 1.41985 1.57942 1.77304 0.99708 1.08543 1.25351 0.88502 0.84571 0.88325 0.73885 0.89604 0.88019 0.85847 0.90086 0.89477 0.88715 0.97680 0.96408 0.78673 0.94092 0.81825 0.80411 0.76824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.61 11.39 127.77 1.46 2.07 16 2 N -0.35 -7.41 3.95 -367.94 -1.45 -8.87 16 3 C 0.12 2.54 9.76 84.27 0.82 3.36 16 4 C -0.30 -10.77 6.26 -18.76 -0.12 -10.89 16 5 C 0.57 24.85 7.64 86.60 0.66 25.51 16 6 O -0.53 -29.58 10.91 14.31 0.16 -29.42 16 7 N -0.62 -20.63 3.06 -792.15 -2.43 -23.06 16 8 C 0.08 1.34 5.27 86.85 0.46 1.80 16 9 C -0.11 -1.51 7.08 31.99 0.23 -1.28 16 10 C -0.11 -2.41 6.44 31.78 0.20 -2.21 16 11 C 0.13 4.78 3.06 45.34 0.14 4.92 16 12 H 0.04 1.72 8.11 -2.39 -0.02 1.70 16 13 C 0.15 7.02 5.61 86.38 0.48 7.50 16 14 N -0.74 -44.64 4.20 -343.45 -1.44 -46.08 16 15 C -0.34 -22.29 9.99 84.03 0.84 -21.45 16 16 H 0.05 3.02 7.83 -2.91 -0.02 3.00 16 17 C -0.10 -6.68 5.50 84.86 0.47 -6.21 16 18 N -0.96 -67.01 13.70 21.65 0.30 -66.72 16 19 Si 1.12 58.89 29.92 68.60 2.05 60.95 16 20 H -0.29 -15.11 7.11 99.48 0.71 -14.40 16 21 H -0.28 -13.28 7.11 99.48 0.71 -12.57 16 22 H -0.29 -14.52 7.11 99.48 0.71 -13.82 16 23 C 0.17 6.68 7.29 43.90 0.32 7.00 16 24 C 0.03 1.14 6.69 24.24 0.16 1.30 16 25 C -0.18 -7.03 10.85 22.41 0.24 -6.79 16 26 C -0.22 -8.40 10.89 22.12 0.24 -8.16 16 27 C -0.02 -0.92 12.08 67.02 0.81 -0.11 16 28 O -0.16 -7.94 8.98 11.94 0.11 -7.83 16 29 N -0.29 -9.17 12.51 -44.76 -0.56 -9.73 16 30 H 0.10 0.49 8.14 -2.39 -0.02 0.47 16 31 H 0.14 -0.12 8.13 -2.39 -0.02 -0.14 16 32 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.25 2.62 4.78 -2.91 -0.01 2.61 16 34 H 0.09 1.23 8.03 -2.39 -0.02 1.21 16 35 H 0.10 1.24 5.33 -2.39 -0.01 1.23 16 36 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.09 1.71 7.85 -2.39 -0.02 1.69 16 39 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.01 0.25 8.14 -2.39 -0.02 0.23 16 41 H 0.02 0.83 8.09 -2.39 -0.02 0.81 16 42 H 0.37 24.04 3.95 -92.71 -0.37 23.67 16 43 H 0.25 18.01 6.61 -92.70 -0.61 17.39 16 44 H 0.16 5.52 8.06 -2.91 -0.02 5.50 16 45 H 0.18 5.29 8.06 -2.91 -0.02 5.26 16 46 H 0.22 7.98 8.06 -2.91 -0.02 7.96 16 Total: -1.00 -103.42 376.08 4.96 -98.46 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: 0.81 Total: 35.93 kcal Atomic # 6 Polarization: -11.05 SS G_CDS: 7.42 Total: -3.63 kcal Atomic # 7 Polarization: -148.86 SS G_CDS: -5.59 Total: -154.45 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: 0.26 Total: -37.25 kcal Atomic # 14 Polarization: 58.89 SS G_CDS: 2.05 Total: 60.95 kcal Total: -103.42 4.96 -98.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733342520.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.902 kcal (2) G-P(sol) polarization free energy of solvation -103.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -98.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds