Wall clock time and date at job start Sat Apr 11 2020 07:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42894 * 114.00074 * 2 1 4 4 C 1.53001 * 109.47226 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47204 * 64.99505 * 4 3 2 6 6 C 1.37096 * 120.00260 * 270.00407 * 5 4 3 7 7 H 1.07996 * 120.00150 * 141.87794 * 6 5 4 8 8 C 1.38950 * 119.99851 * 321.86923 * 6 5 4 9 9 N 1.31420 * 120.00013 * 340.30566 * 8 6 5 10 10 Si 1.86797 * 120.00058 * 160.30501 * 8 6 5 11 11 H 1.48504 * 109.47014 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47024 * 120.00126 * 10 8 6 13 13 H 1.48498 * 109.46972 * 240.00161 * 10 8 6 14 14 C 1.34780 * 119.99570 * 90.00348 * 5 4 3 15 15 O 1.21287 * 120.00199 * 356.64169 * 14 5 4 16 16 C 1.50705 * 119.99964 * 176.64791 * 14 5 4 17 17 C 1.50692 * 109.47207 * 185.55825 * 16 14 5 18 18 N 1.30619 * 126.27908 * 269.99340 * 17 16 14 19 19 N 1.28543 * 110.06414 * 180.02562 * 18 17 16 20 20 C 1.31453 * 109.71499 * 0.02562 * 19 18 17 21 21 C 1.47933 * 126.50630 * 180.02562 * 20 19 18 22 22 C 1.39518 * 120.13582 * 162.55419 * 21 20 19 23 23 C 1.37977 * 119.85905 * 179.74802 * 22 21 20 24 24 C 1.38348 * 120.13467 * 0.53214 * 23 22 21 25 25 C 1.38350 * 120.28474 * 359.74308 * 24 23 22 26 26 C 1.37973 * 120.13575 * 359.97438 * 25 24 23 27 27 N 1.36077 * 126.28350 * 89.99549 * 17 16 14 28 28 C 1.46503 * 127.09990 * 359.97438 * 27 17 16 29 29 H 1.09000 * 109.47052 * 60.00187 * 1 2 3 30 30 H 1.09009 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47869 * 300.00297 * 1 2 3 32 32 H 1.09006 * 109.47402 * 59.99532 * 3 2 1 33 33 H 1.08996 * 109.47190 * 299.99555 * 3 2 1 34 34 H 1.08999 * 109.47182 * 304.99887 * 4 3 2 35 35 H 1.08999 * 109.47466 * 185.00002 * 4 3 2 36 36 H 0.97001 * 119.99523 * 185.01902 * 9 8 6 37 37 H 1.09001 * 109.47117 * 65.54977 * 16 14 5 38 38 H 1.09006 * 109.46788 * 305.55531 * 16 14 5 39 39 H 1.08006 * 120.07487 * 359.97438 * 22 21 20 40 40 H 1.07994 * 119.93464 * 180.27669 * 23 22 21 41 41 H 1.08004 * 119.85552 * 179.72317 * 24 23 22 42 42 H 1.07994 * 119.92981 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.06416 * 180.02562 * 26 25 24 44 44 H 1.08998 * 109.47039 * 264.19405 * 28 27 17 45 45 H 1.08995 * 109.47299 * 24.19184 * 28 27 17 46 46 H 1.08996 * 109.47487 * 144.19364 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5638 -1.2508 6 6 4.0978 -0.7992 -1.3344 7 1 3.8149 -1.3119 -2.2419 8 6 4.5849 -1.5211 -0.2517 9 7 5.2798 -0.9137 0.6839 10 14 4.2520 -3.3548 -0.1258 11 1 3.4534 -3.7945 -1.2982 12 1 5.5411 -4.0914 -0.1012 13 1 3.4971 -3.6364 1.1216 14 6 4.2633 1.3328 -2.3199 15 8 4.0980 2.5331 -2.2655 16 6 4.7893 0.7011 -3.5831 17 6 5.1559 1.7799 -4.5692 18 7 4.3674 2.3058 -5.4681 19 7 5.0007 3.1985 -6.1422 20 6 6.2373 3.2895 -5.7056 21 6 7.2864 4.1985 -6.2169 22 6 8.4235 4.4569 -5.4509 23 6 9.4010 5.3015 -5.9356 24 6 9.2501 5.9003 -7.1736 25 6 8.1222 5.6526 -7.9356 26 6 7.1404 4.8054 -7.4646 27 7 6.3690 2.3850 -4.6868 28 6 7.5689 2.1220 -3.8884 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8507 0.5685 0.8427 35 1 3.9784 2.1764 0.0902 36 1 5.6815 -1.4287 1.4011 37 1 4.0216 0.0592 -4.0153 38 1 5.6724 0.1057 -3.3510 39 1 8.5402 3.9939 -4.4821 40 1 10.2837 5.4989 -5.3456 41 1 10.0159 6.5642 -7.5467 42 1 8.0105 6.1228 -8.9014 43 1 6.2606 4.6125 -8.0606 44 1 7.6275 2.8425 -3.0725 45 1 7.5191 1.1131 -3.4792 46 1 8.4528 2.2150 -4.5193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000565207854.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:10 Heat of formation + Delta-G solvation = 37.268449 kcal Electronic energy + Delta-G solvation = -30029.593048 eV Core-core repulsion = 25921.559395 eV Total energy + Delta-G solvation = -4108.033653 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.63412 -39.12567 -38.70202 -36.96181 -34.91780 -34.74478 -32.83985 -31.65515 -31.14950 -30.79389 -29.19715 -27.68329 -27.02717 -25.77897 -24.70626 -23.50546 -22.80064 -22.10491 -20.73182 -20.47470 -19.13289 -17.41671 -17.05737 -16.53326 -16.34788 -15.80926 -15.70978 -15.42390 -15.27007 -14.90827 -14.48217 -14.45498 -14.14181 -14.05760 -13.79232 -13.56057 -13.31039 -13.18714 -12.95695 -12.66287 -12.51784 -12.00698 -11.88562 -11.50013 -11.35184 -11.24592 -11.18823 -11.15372 -11.01478 -10.93287 -10.75303 -10.37156 -10.10215 -10.02590 -9.91134 -9.70516 -9.22064 -9.13294 -8.97390 -8.61354 -8.11782 -7.56006 -6.41796 -4.10433 0.79581 1.21947 2.27832 2.65413 3.10266 3.19085 3.23552 3.27233 3.74518 3.76416 4.08836 4.24379 4.49726 4.56546 4.63762 4.77289 4.77571 4.91521 4.93628 5.00812 5.15572 5.21560 5.28180 5.40707 5.48094 5.67101 5.67736 5.75306 5.77937 5.91027 5.94889 6.01401 6.08287 6.10623 6.16869 6.25660 6.28208 6.30805 6.34776 6.42442 6.51912 6.65694 6.74660 7.11782 7.21442 7.43168 7.77328 7.96276 8.30748 9.04126 9.07832 9.40126 9.83352 10.60883 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016589 B = 0.002752 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.489049 B =10172.998534 C =10843.320439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.363 6.363 3 C 0.053 3.947 4 C 0.114 3.886 5 N -0.424 5.424 6 C -0.329 4.329 7 H 0.088 0.912 8 C 0.054 3.946 9 N -0.864 5.864 10 Si 0.917 3.083 11 H -0.267 1.267 12 H -0.285 1.285 13 H -0.279 1.279 14 C 0.471 3.529 15 O -0.600 6.600 16 C -0.040 4.040 17 C 0.233 3.767 18 N -0.290 5.290 19 N -0.278 5.278 20 C 0.192 3.808 21 C 0.000 4.000 22 C -0.118 4.118 23 C -0.117 4.117 24 C -0.115 4.115 25 C -0.118 4.118 26 C -0.081 4.081 27 N -0.466 5.466 28 C 0.067 3.933 29 H 0.032 0.968 30 H 0.077 0.923 31 H 0.029 0.971 32 H 0.038 0.962 33 H 0.041 0.959 34 H 0.116 0.884 35 H 0.069 0.931 36 H 0.270 0.730 37 H 0.116 0.884 38 H 0.108 0.892 39 H 0.130 0.870 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.128 0.872 43 H 0.136 0.864 44 H 0.085 0.915 45 H 0.099 0.901 46 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.563 5.726 -7.731 12.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.281 6.281 3 C -0.025 4.025 4 C -0.009 4.009 5 N -0.142 5.142 6 C -0.457 4.457 7 H 0.106 0.894 8 C -0.152 4.152 9 N -0.501 5.501 10 Si 0.744 3.256 11 H -0.191 1.191 12 H -0.211 1.211 13 H -0.205 1.205 14 C 0.259 3.741 15 O -0.487 6.487 16 C -0.083 4.083 17 C -0.034 4.034 18 N -0.130 5.130 19 N -0.119 5.119 20 C -0.071 4.071 21 C -0.003 4.003 22 C -0.138 4.138 23 C -0.135 4.135 24 C -0.134 4.134 25 C -0.136 4.136 26 C -0.100 4.100 27 N -0.156 5.156 28 C -0.076 4.076 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.134 0.866 35 H 0.087 0.913 36 H 0.080 0.920 37 H 0.134 0.866 38 H 0.126 0.874 39 H 0.147 0.853 40 H 0.145 0.855 41 H 0.142 0.858 42 H 0.146 0.854 43 H 0.154 0.846 44 H 0.104 0.896 45 H 0.117 0.883 46 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 6.369 6.312 -8.240 12.177 hybrid contribution 0.683 -1.008 1.160 1.682 sum 7.052 5.304 -7.080 11.313 Atomic orbital electron populations 1.22647 0.83444 1.01724 0.98864 1.88131 1.17340 1.27589 1.95031 1.23001 0.96422 0.84408 0.98631 1.21499 0.89468 0.98886 0.91084 1.43269 1.55670 1.06203 1.09012 1.19370 1.43574 0.80491 1.02220 0.89433 1.25292 0.94028 1.00038 0.95841 1.69807 1.29606 1.36674 1.13989 0.86032 0.78052 0.82585 0.78892 1.19131 1.21100 1.20470 1.19970 0.81951 0.86450 0.85749 1.90583 1.58874 1.14971 1.84237 1.19910 1.04043 0.93038 0.91262 1.24523 0.81426 0.98470 0.98947 1.74165 1.24571 1.07492 1.06795 1.74412 1.01056 1.14210 1.22213 1.22635 0.95750 0.96263 0.92430 1.17504 0.91530 0.96291 0.94965 1.21503 0.93420 0.98999 0.99896 1.21034 0.98926 0.97218 0.96318 1.21273 0.97883 0.99529 0.94740 1.21112 0.93940 0.98404 1.00178 1.21221 0.99189 0.95378 0.94259 1.46155 1.12242 1.29778 1.27459 1.22317 0.84879 1.04732 0.95672 0.94897 0.90432 0.95239 0.94384 0.94089 0.86646 0.91273 0.92005 0.86611 0.87404 0.85277 0.85544 0.85836 0.85432 0.84642 0.89618 0.88253 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.71 10.18 -35.23 -0.36 -8.06 16 3 C 0.05 1.11 6.28 37.16 0.23 1.34 16 4 C 0.11 2.65 5.40 -4.04 -0.02 2.63 16 5 N -0.42 -10.16 2.50 -114.81 -0.29 -10.44 16 6 C -0.33 -7.87 8.01 -14.93 -0.12 -7.99 16 7 H 0.09 2.03 7.27 -52.49 -0.38 1.65 16 8 C 0.05 1.29 5.00 -17.46 -0.09 1.21 16 9 N -0.86 -21.47 11.39 55.50 0.63 -20.83 16 10 Si 0.92 19.11 29.60 -169.99 -5.03 14.08 16 11 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 12 H -0.28 -5.84 7.11 56.52 0.40 -5.44 16 13 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 14 C 0.47 11.07 7.61 -10.98 -0.08 10.99 16 15 O -0.60 -15.74 15.66 5.55 0.09 -15.65 16 16 C -0.04 -0.80 4.75 -29.04 -0.14 -0.93 16 17 C 0.23 4.68 6.55 -154.37 -1.01 3.67 16 18 N -0.29 -6.40 12.19 32.92 0.40 -6.00 16 19 N -0.28 -5.71 12.02 32.51 0.39 -5.32 16 20 C 0.19 3.40 7.70 -154.23 -1.19 2.22 16 21 C 0.00 0.00 5.87 -104.97 -0.62 -0.62 16 22 C -0.12 -1.37 8.75 -39.20 -0.34 -1.71 16 23 C -0.12 -1.09 10.03 -39.64 -0.40 -1.49 16 24 C -0.12 -1.01 10.04 -39.50 -0.40 -1.40 16 25 C -0.12 -1.13 10.03 -39.64 -0.40 -1.53 16 26 C -0.08 -0.99 9.70 -39.20 -0.38 -1.37 16 27 N -0.47 -8.06 3.20 -118.25 -0.38 -8.44 16 28 C 0.07 0.85 9.30 59.85 0.56 1.40 16 29 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.08 1.12 8.14 -51.92 -0.42 0.70 16 31 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.12 2.86 5.49 -51.93 -0.29 2.57 16 35 H 0.07 1.61 7.47 -51.93 -0.39 1.23 16 36 H 0.27 6.36 8.32 -40.82 -0.34 6.02 16 37 H 0.12 2.18 7.85 -51.93 -0.41 1.77 16 38 H 0.11 1.90 7.00 -51.93 -0.36 1.54 16 39 H 0.13 1.35 4.86 -52.48 -0.26 1.09 16 40 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.75 8.06 -52.48 -0.42 0.33 16 42 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 43 H 0.14 1.68 7.96 -52.49 -0.42 1.26 16 44 H 0.09 1.07 7.79 -51.93 -0.40 0.66 16 45 H 0.10 1.20 7.06 -51.93 -0.37 0.83 16 46 H 0.09 0.87 6.43 -51.93 -0.33 0.54 16 LS Contribution 386.48 15.07 5.82 5.82 Total: -1.00 -32.87 386.48 -8.12 -40.99 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -6.12 Total: 5.83 kcal Atomic # 6 Polarization: 11.30 SS G_CDS: -3.28 Total: 8.02 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.76 Total: -51.03 kcal Atomic # 8 Polarization: -23.44 SS G_CDS: -0.27 Total: -23.71 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.87 -8.12 -40.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565207854.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.259 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.990 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds