Wall clock time and date at job start Sat Apr 11 2020 07:11:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.42894 * 114.00074 * 2 1 4 4 C 1.53001 * 109.47226 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47204 * 64.99505 * 4 3 2 6 6 C 1.37096 * 120.00260 * 270.00407 * 5 4 3 7 7 H 1.07996 * 120.00150 * 141.87794 * 6 5 4 8 8 C 1.38950 * 119.99851 * 321.86923 * 6 5 4 9 9 N 1.31420 * 120.00013 * 340.30566 * 8 6 5 10 10 Si 1.86797 * 120.00058 * 160.30501 * 8 6 5 11 11 H 1.48504 * 109.47014 * 0.02562 * 10 8 6 12 12 H 1.48496 * 109.47024 * 120.00126 * 10 8 6 13 13 H 1.48498 * 109.46972 * 240.00161 * 10 8 6 14 14 C 1.34780 * 119.99570 * 90.00348 * 5 4 3 15 15 O 1.21287 * 120.00199 * 356.64169 * 14 5 4 16 16 C 1.50705 * 119.99964 * 176.64791 * 14 5 4 17 17 C 1.50692 * 109.47207 * 185.55825 * 16 14 5 18 18 N 1.30619 * 126.27908 * 269.99340 * 17 16 14 19 19 N 1.28543 * 110.06414 * 180.02562 * 18 17 16 20 20 C 1.31453 * 109.71499 * 0.02562 * 19 18 17 21 21 C 1.47933 * 126.50630 * 180.02562 * 20 19 18 22 22 C 1.39518 * 120.13582 * 162.55419 * 21 20 19 23 23 C 1.37977 * 119.85905 * 179.74802 * 22 21 20 24 24 C 1.38348 * 120.13467 * 0.53214 * 23 22 21 25 25 C 1.38350 * 120.28474 * 359.74308 * 24 23 22 26 26 C 1.37973 * 120.13575 * 359.97438 * 25 24 23 27 27 N 1.36077 * 126.28350 * 89.99549 * 17 16 14 28 28 C 1.46503 * 127.09990 * 359.97438 * 27 17 16 29 29 H 1.09000 * 109.47052 * 60.00187 * 1 2 3 30 30 H 1.09009 * 109.47363 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47869 * 300.00297 * 1 2 3 32 32 H 1.09006 * 109.47402 * 59.99532 * 3 2 1 33 33 H 1.08996 * 109.47190 * 299.99555 * 3 2 1 34 34 H 1.08999 * 109.47182 * 304.99887 * 4 3 2 35 35 H 1.08999 * 109.47466 * 185.00002 * 4 3 2 36 36 H 0.97001 * 119.99523 * 185.01902 * 9 8 6 37 37 H 1.09001 * 109.47117 * 65.54977 * 16 14 5 38 38 H 1.09006 * 109.46788 * 305.55531 * 16 14 5 39 39 H 1.08006 * 120.07487 * 359.97438 * 22 21 20 40 40 H 1.07994 * 119.93464 * 180.27669 * 23 22 21 41 41 H 1.08004 * 119.85552 * 179.72317 * 24 23 22 42 42 H 1.07994 * 119.92981 * 180.02562 * 25 24 23 43 43 H 1.08000 * 120.06416 * 180.02562 * 26 25 24 44 44 H 1.08998 * 109.47039 * 264.19405 * 28 27 17 45 45 H 1.08995 * 109.47299 * 24.19184 * 28 27 17 46 46 H 1.08996 * 109.47487 * 144.19364 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0101 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5638 -1.2508 6 6 4.0978 -0.7992 -1.3344 7 1 3.8149 -1.3119 -2.2419 8 6 4.5849 -1.5211 -0.2517 9 7 5.2798 -0.9137 0.6839 10 14 4.2520 -3.3548 -0.1258 11 1 3.4534 -3.7945 -1.2982 12 1 5.5411 -4.0914 -0.1012 13 1 3.4971 -3.6364 1.1216 14 6 4.2633 1.3328 -2.3199 15 8 4.0980 2.5331 -2.2655 16 6 4.7893 0.7011 -3.5831 17 6 5.1559 1.7799 -4.5692 18 7 4.3674 2.3058 -5.4681 19 7 5.0007 3.1985 -6.1422 20 6 6.2373 3.2895 -5.7056 21 6 7.2864 4.1985 -6.2169 22 6 8.4235 4.4569 -5.4509 23 6 9.4010 5.3015 -5.9356 24 6 9.2501 5.9003 -7.1736 25 6 8.1222 5.6526 -7.9356 26 6 7.1404 4.8054 -7.4646 27 7 6.3690 2.3850 -4.6868 28 6 7.5689 2.1220 -3.8884 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 1.6885 1.8464 0.8900 33 1 1.6886 1.8463 -0.8900 34 1 3.8507 0.5685 0.8427 35 1 3.9784 2.1764 0.0902 36 1 5.6815 -1.4287 1.4011 37 1 4.0216 0.0592 -4.0153 38 1 5.6724 0.1057 -3.3510 39 1 8.5402 3.9939 -4.4821 40 1 10.2837 5.4989 -5.3456 41 1 10.0159 6.5642 -7.5467 42 1 8.0105 6.1228 -8.9014 43 1 6.2606 4.6125 -8.0606 44 1 7.6275 2.8425 -3.0725 45 1 7.5191 1.1131 -3.4792 46 1 8.4528 2.2150 -4.5193 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565207854.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:09 Heat of formation + Delta-G solvation = 18.246883 kcal Electronic energy + Delta-G solvation = -30030.417885 eV Core-core repulsion = 25921.559395 eV Total energy + Delta-G solvation = -4108.858490 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.03564 -40.56350 -39.93118 -38.57443 -36.63282 -36.17747 -34.13275 -33.51478 -32.20126 -31.86883 -30.74062 -28.91616 -28.40253 -27.27906 -26.47132 -24.56075 -24.06733 -23.39866 -21.95836 -21.84784 -20.92921 -18.93623 -18.32505 -18.05850 -17.56310 -17.25783 -17.16407 -16.88243 -16.68538 -16.20649 -16.13378 -15.89094 -15.62733 -15.35910 -14.89491 -14.68774 -14.54466 -14.41521 -14.32476 -13.77889 -13.64553 -13.58533 -13.43846 -13.10971 -12.88022 -12.79333 -12.63917 -12.53042 -12.47425 -12.27130 -12.02584 -12.00282 -11.80539 -11.41512 -11.21572 -11.10109 -10.88354 -10.55556 -10.38035 -9.93216 -9.44186 -9.34146 -8.25368 -5.99282 -0.18393 0.42510 0.99522 1.39253 1.43916 1.54884 1.64375 1.80308 1.95702 2.35652 2.84096 2.88247 3.00102 3.12889 3.20945 3.39895 3.63897 3.81248 4.00361 4.06291 4.13472 4.20047 4.24947 4.25530 4.34543 4.44037 4.47676 4.50829 4.52158 4.59163 4.59775 4.60841 4.72906 4.77626 4.80948 4.86269 4.95166 5.04495 5.10153 5.34444 5.45548 5.50591 5.54524 5.56329 5.82851 5.98342 5.99040 6.39710 6.45159 7.18153 7.55097 7.62596 7.98957 8.78128 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.016589 B = 0.002752 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.489049 B =10172.998534 C =10843.320439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.392 6.392 3 C 0.064 3.936 4 C 0.113 3.887 5 N -0.429 5.429 6 C -0.339 4.339 7 H 0.093 0.907 8 C 0.022 3.978 9 N -0.888 5.888 10 Si 0.975 3.025 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.286 1.286 14 C 0.463 3.537 15 O -0.635 6.635 16 C -0.027 4.027 17 C 0.215 3.785 18 N -0.328 5.328 19 N -0.321 5.321 20 C 0.209 3.791 21 C -0.038 4.038 22 C -0.122 4.122 23 C -0.114 4.114 24 C -0.102 4.102 25 C -0.117 4.117 26 C -0.094 4.094 27 N -0.466 5.466 28 C 0.059 3.941 29 H 0.036 0.964 30 H 0.095 0.905 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.025 0.975 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.272 0.728 37 H 0.121 0.879 38 H 0.127 0.873 39 H 0.136 0.864 40 H 0.159 0.841 41 H 0.161 0.839 42 H 0.155 0.845 43 H 0.122 0.878 44 H 0.087 0.913 45 H 0.105 0.895 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.658 5.900 -8.152 13.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.311 6.311 3 C -0.014 4.014 4 C -0.011 4.011 5 N -0.146 5.146 6 C -0.467 4.467 7 H 0.111 0.889 8 C -0.182 4.182 9 N -0.526 5.526 10 Si 0.800 3.200 11 H -0.186 1.186 12 H -0.203 1.203 13 H -0.212 1.212 14 C 0.252 3.748 15 O -0.523 6.523 16 C -0.069 4.069 17 C -0.053 4.053 18 N -0.168 5.168 19 N -0.161 5.161 20 C -0.056 4.056 21 C -0.041 4.041 22 C -0.141 4.141 23 C -0.132 4.132 24 C -0.120 4.120 25 C -0.134 4.134 26 C -0.114 4.114 27 N -0.156 5.156 28 C -0.082 4.082 29 H 0.055 0.945 30 H 0.114 0.886 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.119 0.881 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.138 0.862 38 H 0.145 0.855 39 H 0.154 0.846 40 H 0.176 0.824 41 H 0.178 0.822 42 H 0.173 0.827 43 H 0.140 0.860 44 H 0.105 0.895 45 H 0.123 0.877 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 8.465 6.473 -8.660 13.731 hybrid contribution 0.131 -0.924 1.271 1.577 sum 8.596 5.548 -7.389 12.620 Atomic orbital electron populations 1.22886 0.80834 1.03371 1.00102 1.88062 1.20241 1.27513 1.95261 1.22794 0.94801 0.84711 0.99082 1.21440 0.91278 0.97799 0.90580 1.43449 1.55458 1.06495 1.09237 1.19588 1.43823 0.80506 1.02734 0.88913 1.25937 0.93521 1.03397 0.95333 1.69889 1.30176 1.38056 1.14450 0.85147 0.77997 0.78393 0.78421 1.18603 1.20264 1.21208 1.20512 0.81495 0.86100 0.86702 1.90547 1.60295 1.16489 1.84999 1.19772 1.04745 0.92934 0.89421 1.24458 0.82585 0.99165 0.99116 1.74022 1.26164 1.08592 1.08005 1.74300 1.02746 1.15318 1.23745 1.23345 0.95618 0.95411 0.91238 1.17679 0.92072 0.97782 0.96563 1.21672 0.92983 0.99505 0.99970 1.21443 0.99082 0.95873 0.96812 1.21765 0.97802 0.98488 0.93936 1.21441 0.93323 0.97316 1.01361 1.21294 0.99872 0.96333 0.93912 1.46366 1.12535 1.29111 1.27570 1.22655 0.84423 1.05085 0.96032 0.94527 0.88645 0.93060 0.91746 0.95652 0.88080 0.92420 0.91792 0.86152 0.85492 0.84613 0.82381 0.82174 0.82741 0.85968 0.89455 0.87686 0.85773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.76 11.01 113.37 1.25 2.00 16 2 O -0.39 -16.48 10.18 -148.98 -1.52 -18.00 16 3 C 0.06 2.68 6.28 71.98 0.45 3.14 16 4 C 0.11 5.37 5.40 86.38 0.47 5.83 16 5 N -0.43 -20.99 2.50 -635.54 -1.59 -22.57 16 6 C -0.34 -16.26 8.01 84.04 0.67 -15.59 16 7 H 0.09 4.28 7.27 -2.91 -0.02 4.25 16 8 C 0.02 1.04 5.00 84.93 0.42 1.47 16 9 N -0.89 -44.20 11.39 21.66 0.25 -43.96 16 10 Si 0.98 38.55 29.60 68.60 2.03 40.58 16 11 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 12 H -0.28 -10.54 7.11 99.48 0.71 -9.84 16 13 H -0.29 -11.59 7.11 99.48 0.71 -10.88 16 14 C 0.46 22.41 7.61 87.66 0.67 23.08 16 15 O -0.63 -34.59 15.66 -3.05 -0.05 -34.64 16 16 C -0.03 -1.09 4.75 29.10 0.14 -0.95 16 17 C 0.22 8.96 6.55 137.76 0.90 9.86 16 18 N -0.33 -15.22 12.19 -49.77 -0.61 -15.83 16 19 N -0.32 -13.91 12.02 -51.06 -0.61 -14.52 16 20 C 0.21 7.60 7.70 136.41 1.05 8.65 16 21 C -0.04 -1.07 5.87 -20.09 -0.12 -1.19 16 22 C -0.12 -2.57 8.75 22.52 0.20 -2.37 16 23 C -0.11 -1.69 10.03 22.23 0.22 -1.47 16 24 C -0.10 -1.33 10.04 22.32 0.22 -1.11 16 25 C -0.12 -1.92 10.03 22.23 0.22 -1.70 16 26 C -0.09 -2.28 9.70 22.51 0.22 -2.07 16 27 N -0.47 -16.42 3.20 -528.04 -1.69 -18.11 16 28 C 0.06 1.46 9.30 127.77 1.19 2.65 16 29 H 0.04 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.10 2.59 8.14 -2.38 -0.02 2.57 16 31 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.10 5.12 5.49 -2.39 -0.01 5.10 16 35 H 0.06 2.80 7.47 -2.39 -0.02 2.78 16 36 H 0.27 12.81 8.32 -92.71 -0.77 12.04 16 37 H 0.12 4.67 7.85 -2.39 -0.02 4.65 16 38 H 0.13 4.51 7.00 -2.38 -0.02 4.49 16 39 H 0.14 2.58 4.86 -2.91 -0.01 2.56 16 40 H 0.16 1.36 8.06 -2.91 -0.02 1.33 16 41 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 42 H 0.15 1.65 8.06 -2.91 -0.02 1.63 16 43 H 0.12 3.19 7.96 -2.91 -0.02 3.16 16 44 H 0.09 2.14 7.79 -2.39 -0.02 2.12 16 45 H 0.10 2.46 7.06 -2.39 -0.02 2.45 16 46 H 0.12 2.17 6.43 -2.39 -0.02 2.16 16 Total: -1.00 -74.20 386.48 5.40 -68.80 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 1.01 Total: 28.02 kcal Atomic # 6 Polarization: 22.07 SS G_CDS: 8.18 Total: 30.25 kcal Atomic # 7 Polarization: -110.75 SS G_CDS: -4.25 Total: -115.00 kcal Atomic # 8 Polarization: -51.08 SS G_CDS: -1.56 Total: -52.64 kcal Atomic # 14 Polarization: 38.55 SS G_CDS: 2.03 Total: 40.58 kcal Total: -74.20 5.40 -68.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565207854.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.042 kcal (2) G-P(sol) polarization free energy of solvation -74.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.847 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.795 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds