Wall clock time and date at job start Sat Apr 11 2020 07:11:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37345 * 125.82967 * 2 1 4 4 N 1.29458 * 108.82293 * 179.97438 * 3 2 1 5 5 N 1.40170 * 108.13020 * 359.97438 * 4 3 2 6 6 C 1.40161 * 126.34930 * 180.02562 * 5 4 3 7 7 C 1.38884 * 120.00062 * 179.70359 * 6 5 4 8 8 C 1.38033 * 119.99944 * 179.72265 * 7 6 5 9 9 C 1.38878 * 119.99775 * 0.54376 * 8 7 6 10 10 N 1.40047 * 119.99810 * 179.70428 * 9 8 7 11 11 C 1.34773 * 120.00176 * 33.34037 * 10 9 8 12 12 O 1.21297 * 119.99819 * 5.27955 * 11 10 9 13 13 C 1.50697 * 120.00178 * 185.27150 * 11 10 9 14 14 C 1.52999 * 109.47197 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46955 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.46932 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47193 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99968 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99969 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00110 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99858 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47141 * 59.99770 * 21 19 17 23 23 H 1.48505 * 109.47139 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47105 * 299.99706 * 21 19 17 25 25 C 1.38879 * 120.00215 * 359.73091 * 9 8 7 26 26 C 1.38027 * 120.00161 * 359.97438 * 25 9 8 27 27 C 1.34818 * 125.82864 * 179.97438 * 2 1 3 28 28 O 1.21804 * 126.29945 * 0.03306 * 27 2 1 29 29 H 1.08997 * 109.47451 * 0.02562 * 1 2 3 30 30 H 1.09008 * 109.47241 * 120.02678 * 1 2 3 31 31 H 1.08999 * 109.47536 * 240.02691 * 1 2 3 32 32 H 1.07995 * 125.58602 * 0.22744 * 3 2 1 33 33 H 1.08006 * 120.00097 * 359.96682 * 7 6 5 34 34 H 1.07996 * 119.99677 * 180.24780 * 8 7 6 35 35 H 0.97003 * 120.00028 * 213.34409 * 10 9 8 36 36 H 1.08999 * 109.47669 * 300.00665 * 13 11 10 37 37 H 1.09005 * 109.47254 * 60.00373 * 13 11 10 38 38 H 1.08994 * 109.47452 * 300.00392 * 14 13 11 39 39 H 1.09000 * 109.46799 * 60.00540 * 14 13 11 40 40 H 1.09002 * 109.46968 * 300.00075 * 15 14 13 41 41 H 1.09000 * 109.47122 * 60.00498 * 15 14 13 42 42 H 1.09007 * 109.46932 * 300.00104 * 16 15 14 43 43 H 1.09000 * 109.47726 * 59.99378 * 16 15 14 44 44 H 0.97001 * 119.99857 * 179.97438 * 20 19 17 45 45 H 1.08004 * 120.00624 * 179.97438 * 25 9 8 46 46 H 1.08001 * 120.00515 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2689 1.1135 0.0000 4 7 3.5069 0.7349 0.0005 5 7 3.5344 -0.6665 0.0015 6 6 4.6793 -1.4750 0.0028 7 6 4.5528 -2.8580 0.0099 8 6 5.6804 -3.6542 0.0054 9 6 6.9413 -3.0722 0.0053 10 7 8.0854 -3.8800 0.0070 11 6 8.0738 -5.0661 -0.6328 12 8 7.1074 -5.3914 -1.2897 13 6 9.2615 -5.9882 -0.5323 14 6 8.9930 -7.2563 -1.3451 15 6 10.1986 -8.1927 -1.2425 16 6 9.9304 -9.4605 -2.0558 17 6 11.1176 -10.3831 -1.9542 18 1 11.9776 -10.0939 -1.3685 19 6 11.1062 -11.5960 -2.6099 20 7 10.0591 -11.9479 -3.3236 21 14 12.5782 -12.7393 -2.4846 22 1 12.8032 -13.1024 -1.0623 23 1 12.3177 -13.9699 -3.2740 24 1 13.7835 -12.0547 -3.0174 25 6 7.0678 -1.6892 0.0040 26 6 5.9403 -0.8930 0.0023 27 6 2.2541 -1.0931 0.0005 28 8 1.8803 -2.2523 0.0004 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3634 -0.5143 -0.8898 31 1 -0.3634 -0.5134 0.8902 32 1 1.9247 2.1372 0.0035 33 1 3.5722 -3.3106 0.0149 34 1 5.5820 -4.7297 0.0069 35 1 8.8861 -3.5859 0.4687 36 1 10.1457 -5.4859 -0.9247 37 1 9.4279 -6.2538 0.5117 38 1 8.1087 -7.7587 -0.9531 39 1 8.8269 -6.9903 -2.3890 40 1 11.0831 -7.6904 -1.6343 41 1 10.3643 -8.4586 -0.1985 42 1 9.0457 -9.9629 -1.6644 43 1 9.7648 -9.1943 -3.0998 44 1 10.0513 -12.8010 -3.7852 45 1 8.0484 -1.2365 0.0043 46 1 6.0387 0.1825 0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588162756.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:13 Heat of formation + Delta-G solvation = 30.881013 kcal Electronic energy + Delta-G solvation = -27848.796411 eV Core-core repulsion = 23740.485778 eV Total energy + Delta-G solvation = -4108.310633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.10942 -40.61705 -38.86859 -37.81954 -36.12861 -34.91924 -34.47634 -32.65282 -31.99993 -31.22364 -30.00458 -28.87436 -27.66974 -25.72420 -24.34158 -23.51448 -22.73750 -21.80456 -21.33248 -20.17961 -19.97926 -18.75347 -17.88113 -17.43034 -16.91302 -16.78385 -16.19426 -16.12873 -15.79689 -15.64864 -14.72809 -14.60267 -14.45126 -14.41656 -14.09766 -13.89940 -13.51905 -13.41604 -13.32909 -13.17477 -12.96700 -12.60425 -12.28431 -12.22457 -11.82590 -11.69787 -11.59976 -11.42021 -10.95934 -10.53393 -10.52785 -10.49119 -10.40770 -10.23947 -9.87717 -9.59946 -9.37654 -9.23390 -9.17045 -8.98061 -8.28321 -7.88991 -5.93150 -3.95861 0.74060 1.15178 1.18665 1.51605 2.21501 2.52920 2.63809 2.95329 3.36861 3.41264 3.43430 3.61479 3.80273 4.14904 4.41556 4.50479 4.63761 4.64955 4.72382 4.79553 4.90652 5.02295 5.14875 5.22866 5.25236 5.32587 5.37380 5.42080 5.50394 5.80589 5.81968 5.86374 6.10353 6.12261 6.13408 6.23621 6.29365 6.33469 6.54164 6.80051 6.83836 7.01832 7.10225 7.20305 7.27841 7.52414 7.75649 7.91725 8.07795 8.10242 8.49589 9.11620 9.67684 11.18068 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.028359 B = 0.001471 C = 0.001410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.107957 B =19027.061341 C =19855.901389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.561 5.561 3 C 0.263 3.737 4 N -0.281 5.281 5 N -0.391 5.391 6 C 0.156 3.844 7 C -0.118 4.118 8 C -0.095 4.095 9 C 0.143 3.857 10 N -0.680 5.680 11 C 0.511 3.489 12 O -0.512 6.512 13 C -0.137 4.137 14 C -0.105 4.105 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.522 4.522 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.128 4.128 26 C -0.105 4.105 27 C 0.644 3.356 28 O -0.533 6.533 29 H 0.096 0.904 30 H 0.080 0.920 31 H 0.079 0.921 32 H 0.237 0.763 33 H 0.155 0.845 34 H 0.145 0.855 35 H 0.411 0.589 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.047 0.953 41 H 0.047 0.953 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.134 0.866 46 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.681 34.427 10.791 39.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.291 5.291 3 C -0.036 4.036 4 N -0.101 5.101 5 N -0.203 5.203 6 C 0.064 3.936 7 C -0.140 4.140 8 C -0.116 4.116 9 C 0.048 3.952 10 N -0.326 5.326 11 C 0.300 3.700 12 O -0.386 6.386 13 C -0.177 4.177 14 C -0.143 4.143 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.560 4.560 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.149 4.149 26 C -0.126 4.126 27 C 0.344 3.656 28 O -0.405 6.405 29 H 0.114 0.886 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.253 0.747 33 H 0.172 0.828 34 H 0.163 0.837 35 H 0.247 0.753 36 H 0.112 0.888 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.034 0.966 43 H 0.034 0.966 44 H 0.070 0.930 45 H 0.152 0.848 46 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.735 33.416 10.192 38.737 hybrid contribution 0.367 -0.492 0.213 0.650 sum -16.368 32.924 10.406 38.212 Atomic orbital electron populations 1.21872 0.73552 1.04421 1.04334 1.45945 1.09144 1.06445 1.67517 1.26124 0.85619 0.94955 0.96877 1.77074 1.18307 0.90658 1.24068 1.45894 1.04974 1.03285 1.66107 1.17287 0.82992 0.88461 1.04845 1.21282 1.01187 0.90519 1.00978 1.21055 0.89813 1.01264 0.99492 1.17863 0.87151 0.89965 1.00255 1.43772 1.14353 1.19854 1.54667 1.21366 0.90104 0.81022 0.77558 1.90741 1.35710 1.73636 1.38492 1.21823 0.95440 0.96698 1.03720 1.21480 1.00186 0.92942 0.99664 1.21651 0.95308 0.97317 1.00511 1.19095 0.96881 0.90752 0.95021 1.21246 1.02307 1.02227 1.30230 0.92801 1.25039 0.95996 0.98077 0.95408 1.69967 1.29070 1.22238 1.32136 0.86672 0.83131 0.80204 0.78040 1.20295 1.21322 1.20293 1.20703 0.98847 0.91308 1.04013 1.20538 0.89373 1.00545 1.02149 1.16689 0.81568 0.85284 0.82029 1.91054 1.77377 1.14937 1.57151 0.88583 0.90151 0.90183 0.74738 0.82806 0.83741 0.75287 0.88783 0.88652 0.91664 0.91672 0.93427 0.93410 0.96568 0.96573 0.92996 0.84793 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.23 11.08 59.84 0.66 0.90 16 2 N -0.56 -3.56 3.14 -130.10 -0.41 -3.97 16 3 C 0.26 1.10 12.61 -89.09 -1.12 -0.03 16 4 N -0.28 -2.31 11.84 29.87 0.35 -1.95 16 5 N -0.39 -4.41 3.80 -14.07 -0.05 -4.47 16 6 C 0.16 1.90 6.69 -83.57 -0.56 1.34 16 7 C -0.12 -1.59 9.39 -39.42 -0.37 -1.96 16 8 C -0.10 -1.29 8.65 -39.42 -0.34 -1.63 16 9 C 0.14 1.67 6.28 -83.63 -0.53 1.14 16 10 N -0.68 -7.08 5.34 -9.83 -0.05 -7.13 16 11 C 0.51 6.99 7.57 -10.99 -0.08 6.91 16 12 O -0.51 -9.18 13.67 5.54 0.08 -9.11 16 13 C -0.14 -1.74 5.70 -27.88 -0.16 -1.90 16 14 C -0.10 -1.85 4.50 -26.73 -0.12 -1.97 16 15 C -0.11 -2.26 5.15 -26.73 -0.14 -2.40 16 16 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -27.70 13.29 55.43 0.74 -26.96 16 21 Si 0.89 22.04 29.54 -169.99 -5.02 17.01 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 C -0.13 -1.21 9.95 -39.42 -0.39 -1.61 16 26 C -0.11 -1.07 9.66 -39.42 -0.38 -1.45 16 27 C 0.64 7.36 8.48 -86.73 -0.74 6.63 16 28 O -0.53 -7.76 15.13 5.10 0.08 -7.68 16 29 H 0.10 -0.16 8.07 -51.93 -0.42 -0.57 16 30 H 0.08 0.23 8.14 -51.92 -0.42 -0.20 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.24 -0.44 8.06 -52.49 -0.42 -0.86 16 33 H 0.15 2.25 5.50 -52.48 -0.29 1.96 16 34 H 0.14 2.16 6.41 -52.49 -0.34 1.83 16 35 H 0.41 2.72 8.82 -40.82 -0.36 2.36 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 39 H 0.06 1.23 8.10 -51.93 -0.42 0.81 16 40 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 42 H 0.02 0.46 8.14 -51.92 -0.42 0.03 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 45 H 0.13 0.88 8.06 -52.48 -0.42 0.46 16 46 H 0.14 1.19 7.71 -52.49 -0.40 0.79 16 LS Contribution 392.34 15.07 5.91 5.91 Total: -1.00 -39.70 392.34 -9.61 -49.32 By element: Atomic # 1 Polarization: 4.98 SS G_CDS: -6.42 Total: -1.44 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -4.81 Total: -9.54 kcal Atomic # 7 Polarization: -45.05 SS G_CDS: 0.58 Total: -44.48 kcal Atomic # 8 Polarization: -16.94 SS G_CDS: 0.15 Total: -16.79 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -39.70 -9.61 -49.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162756.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.198 kcal (2) G-P(sol) polarization free energy of solvation -39.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds