Wall clock time and date at job start Sat Apr 11 2020 07:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 C 1.37345 * 125.82967 * 2 1 4 4 N 1.29458 * 108.82293 * 179.97438 * 3 2 1 5 5 N 1.40170 * 108.13020 * 359.97438 * 4 3 2 6 6 C 1.40161 * 126.34930 * 180.02562 * 5 4 3 7 7 C 1.38884 * 120.00062 * 179.70359 * 6 5 4 8 8 C 1.38033 * 119.99944 * 179.72265 * 7 6 5 9 9 C 1.38878 * 119.99775 * 0.54376 * 8 7 6 10 10 N 1.40047 * 119.99810 * 179.70428 * 9 8 7 11 11 C 1.34773 * 120.00176 * 33.34037 * 10 9 8 12 12 O 1.21297 * 119.99819 * 5.27955 * 11 10 9 13 13 C 1.50697 * 120.00178 * 185.27150 * 11 10 9 14 14 C 1.52999 * 109.47197 * 180.02562 * 13 11 10 15 15 C 1.53005 * 109.46955 * 180.02562 * 14 13 11 16 16 C 1.52998 * 109.46932 * 180.02562 * 15 14 13 17 17 C 1.50698 * 109.47193 * 180.02562 * 16 15 14 18 18 H 1.07995 * 119.99968 * 359.97438 * 17 16 15 19 19 C 1.37881 * 119.99969 * 180.02562 * 17 16 15 20 20 N 1.31516 * 120.00110 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99858 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47141 * 59.99770 * 21 19 17 23 23 H 1.48505 * 109.47139 * 179.97438 * 21 19 17 24 24 H 1.48503 * 109.47105 * 299.99706 * 21 19 17 25 25 C 1.38879 * 120.00215 * 359.73091 * 9 8 7 26 26 C 1.38027 * 120.00161 * 359.97438 * 25 9 8 27 27 C 1.34818 * 125.82864 * 179.97438 * 2 1 3 28 28 O 1.21804 * 126.29945 * 0.03306 * 27 2 1 29 29 H 1.08997 * 109.47451 * 0.02562 * 1 2 3 30 30 H 1.09008 * 109.47241 * 120.02678 * 1 2 3 31 31 H 1.08999 * 109.47536 * 240.02691 * 1 2 3 32 32 H 1.07995 * 125.58602 * 0.22744 * 3 2 1 33 33 H 1.08006 * 120.00097 * 359.96682 * 7 6 5 34 34 H 1.07996 * 119.99677 * 180.24780 * 8 7 6 35 35 H 0.97003 * 120.00028 * 213.34409 * 10 9 8 36 36 H 1.08999 * 109.47669 * 300.00665 * 13 11 10 37 37 H 1.09005 * 109.47254 * 60.00373 * 13 11 10 38 38 H 1.08994 * 109.47452 * 300.00392 * 14 13 11 39 39 H 1.09000 * 109.46799 * 60.00540 * 14 13 11 40 40 H 1.09002 * 109.46968 * 300.00075 * 15 14 13 41 41 H 1.09000 * 109.47122 * 60.00498 * 15 14 13 42 42 H 1.09007 * 109.46932 * 300.00104 * 16 15 14 43 43 H 1.09000 * 109.47726 * 59.99378 * 16 15 14 44 44 H 0.97001 * 119.99857 * 179.97438 * 20 19 17 45 45 H 1.08004 * 120.00624 * 179.97438 * 25 9 8 46 46 H 1.08001 * 120.00515 * 180.02562 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2689 1.1135 0.0000 4 7 3.5069 0.7349 0.0005 5 7 3.5344 -0.6665 0.0015 6 6 4.6793 -1.4750 0.0028 7 6 4.5528 -2.8580 0.0099 8 6 5.6804 -3.6542 0.0054 9 6 6.9413 -3.0722 0.0053 10 7 8.0854 -3.8800 0.0070 11 6 8.0738 -5.0661 -0.6328 12 8 7.1074 -5.3914 -1.2897 13 6 9.2615 -5.9882 -0.5323 14 6 8.9930 -7.2563 -1.3451 15 6 10.1986 -8.1927 -1.2425 16 6 9.9304 -9.4605 -2.0558 17 6 11.1176 -10.3831 -1.9542 18 1 11.9776 -10.0939 -1.3685 19 6 11.1062 -11.5960 -2.6099 20 7 10.0591 -11.9479 -3.3236 21 14 12.5782 -12.7393 -2.4846 22 1 12.8032 -13.1024 -1.0623 23 1 12.3177 -13.9699 -3.2740 24 1 13.7835 -12.0547 -3.0174 25 6 7.0678 -1.6892 0.0040 26 6 5.9403 -0.8930 0.0023 27 6 2.2541 -1.0931 0.0005 28 8 1.8803 -2.2523 0.0004 29 1 -0.3634 1.0276 -0.0005 30 1 -0.3634 -0.5143 -0.8898 31 1 -0.3634 -0.5134 0.8902 32 1 1.9247 2.1372 0.0035 33 1 3.5722 -3.3106 0.0149 34 1 5.5820 -4.7297 0.0069 35 1 8.8861 -3.5859 0.4687 36 1 10.1457 -5.4859 -0.9247 37 1 9.4279 -6.2538 0.5117 38 1 8.1087 -7.7587 -0.9531 39 1 8.8269 -6.9903 -2.3890 40 1 11.0831 -7.6904 -1.6343 41 1 10.3643 -8.4586 -0.1985 42 1 9.0457 -9.9629 -1.6644 43 1 9.7648 -9.1943 -3.0998 44 1 10.0513 -12.8010 -3.7852 45 1 8.0484 -1.2365 0.0043 46 1 6.0387 0.1825 0.0009 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588162756.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:12 Heat of formation + Delta-G solvation = 5.090172 kcal Electronic energy + Delta-G solvation = -27849.914786 eV Core-core repulsion = 23740.485778 eV Total energy + Delta-G solvation = -4109.429007 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.74110 -41.61112 -39.82174 -38.66817 -36.99307 -36.51713 -35.32401 -34.61536 -32.75431 -32.13145 -31.54284 -29.80225 -28.25533 -27.34590 -25.24732 -24.45931 -24.00239 -22.85598 -22.09296 -21.72246 -21.17449 -19.44996 -18.83715 -18.38986 -18.09022 -17.93137 -17.41703 -17.08584 -16.75213 -16.50991 -16.21844 -15.76763 -15.55566 -15.34593 -14.99662 -14.91974 -14.53673 -14.46311 -14.20642 -14.02665 -13.82979 -13.60371 -13.57267 -13.52678 -13.27719 -12.89341 -12.78792 -12.64685 -12.37523 -12.20941 -12.15951 -12.10988 -11.37418 -11.35768 -11.31465 -11.19849 -11.04132 -10.79365 -10.53963 -10.11171 -10.08833 -8.77309 -8.18081 -6.30575 -0.11241 0.26015 0.54791 1.04011 1.37916 1.40528 1.44754 1.52571 1.64331 2.01258 2.09331 2.42497 2.71963 3.14568 3.26747 3.67996 3.85802 3.91494 4.00861 4.02904 4.07953 4.15477 4.18661 4.36126 4.44657 4.46145 4.59185 4.69402 4.71508 4.74349 4.82651 4.84556 4.87796 5.01008 5.17733 5.19129 5.22474 5.29383 5.34361 5.36199 5.42573 5.57517 5.60408 5.78722 5.88504 5.91039 6.25500 6.42524 6.48418 6.76309 6.87995 7.14606 7.39162 8.93888 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.028359 B = 0.001471 C = 0.001410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.107957 B =19027.061341 C =19855.901389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.555 5.555 3 C 0.294 3.706 4 N -0.313 5.313 5 N -0.405 5.405 6 C 0.149 3.851 7 C -0.140 4.140 8 C -0.113 4.113 9 C 0.129 3.871 10 N -0.658 5.658 11 C 0.510 3.490 12 O -0.566 6.566 13 C -0.124 4.124 14 C -0.099 4.099 15 C -0.095 4.095 16 C 0.017 3.983 17 C -0.543 4.543 18 H 0.068 0.932 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.286 1.286 24 H -0.263 1.263 25 C -0.106 4.106 26 C -0.099 4.099 27 C 0.622 3.378 28 O -0.582 6.582 29 H 0.149 0.851 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.302 0.698 33 H 0.129 0.871 34 H 0.118 0.882 35 H 0.433 0.567 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.041 0.959 39 H 0.043 0.957 40 H 0.064 0.936 41 H 0.062 0.938 42 H -0.017 1.017 43 H -0.016 1.016 44 H 0.262 0.738 45 H 0.176 0.824 46 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.566 38.406 12.247 42.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.282 5.282 3 C -0.002 4.002 4 N -0.134 5.134 5 N -0.215 5.215 6 C 0.056 3.944 7 C -0.162 4.162 8 C -0.134 4.134 9 C 0.034 3.966 10 N -0.305 5.305 11 C 0.300 3.700 12 O -0.444 6.444 13 C -0.163 4.163 14 C -0.137 4.137 15 C -0.133 4.133 16 C -0.020 4.020 17 C -0.581 4.581 18 H 0.086 0.914 19 C -0.204 4.204 20 N -0.579 5.579 21 Si 0.794 3.206 22 H -0.189 1.189 23 H -0.212 1.212 24 H -0.188 1.188 25 C -0.127 4.127 26 C -0.120 4.120 27 C 0.322 3.678 28 O -0.458 6.458 29 H 0.167 0.833 30 H 0.090 0.910 31 H 0.092 0.908 32 H 0.316 0.684 33 H 0.147 0.853 34 H 0.136 0.864 35 H 0.274 0.726 36 H 0.146 0.854 37 H 0.144 0.856 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.082 0.918 41 H 0.081 0.919 42 H 0.001 0.999 43 H 0.002 0.998 44 H 0.071 0.929 45 H 0.194 0.806 46 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.608 37.484 11.693 41.895 hybrid contribution -0.464 -1.602 -0.250 1.687 sum -15.072 35.882 11.443 40.566 Atomic orbital electron populations 1.22248 0.71166 1.07692 1.03683 1.46174 1.10379 1.05592 1.66092 1.27476 0.84012 0.96343 0.92372 1.77088 1.20651 0.88369 1.27305 1.45988 1.04537 1.04797 1.66137 1.17461 0.84531 0.88110 1.04322 1.21079 1.00135 0.91807 1.03173 1.20901 0.91317 1.00097 1.01104 1.17949 0.86508 0.91107 1.01027 1.43473 1.14789 1.18571 1.53692 1.21538 0.89562 0.81839 0.77063 1.90744 1.37634 1.74884 1.41108 1.21694 0.95969 0.94042 1.04579 1.21273 0.98073 0.94927 0.99408 1.21445 0.96909 0.94875 1.00046 1.19070 0.95278 0.93542 0.94111 1.21743 1.03142 1.02898 1.30327 0.91422 1.26106 0.99354 1.00151 0.94797 1.70136 1.31641 1.22897 1.33188 0.85429 0.79020 0.77520 0.78627 1.18904 1.21155 1.18815 1.21087 1.00486 0.89915 1.01166 1.20835 0.88488 1.01646 1.01020 1.17168 0.82450 0.85884 0.82338 1.91004 1.78269 1.17252 1.59248 0.83254 0.91013 0.90782 0.68352 0.85301 0.86436 0.72630 0.85390 0.85638 0.93978 0.93829 0.91770 0.91911 0.99874 0.99775 0.92914 0.80633 0.82129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.27 11.08 127.77 1.42 1.68 16 2 N -0.56 -6.30 3.14 -683.68 -2.15 -8.45 16 3 C 0.29 1.47 12.61 179.81 2.27 3.74 16 4 N -0.31 -4.55 11.84 -59.40 -0.70 -5.25 16 5 N -0.40 -9.30 3.80 -316.50 -1.20 -10.50 16 6 C 0.15 3.76 6.69 38.12 0.26 4.01 16 7 C -0.14 -4.22 9.39 22.38 0.21 -4.01 16 8 C -0.11 -3.36 8.65 22.37 0.19 -3.17 16 9 C 0.13 2.96 6.28 38.14 0.24 3.20 16 10 N -0.66 -12.60 5.34 -303.40 -1.62 -14.22 16 11 C 0.51 13.83 7.57 87.66 0.66 14.49 16 12 O -0.57 -21.57 13.67 -3.08 -0.04 -21.61 16 13 C -0.12 -2.90 5.70 29.85 0.17 -2.73 16 14 C -0.10 -3.55 4.50 30.60 0.14 -3.42 16 15 C -0.10 -3.88 5.15 30.60 0.16 -3.72 16 16 C 0.02 0.95 4.97 29.85 0.15 1.10 16 17 C -0.54 -31.79 9.11 25.60 0.23 -31.56 16 18 H 0.07 3.68 7.74 -2.91 -0.02 3.66 16 19 C -0.01 -0.41 5.46 84.66 0.46 0.05 16 20 N -0.94 -59.86 13.29 21.45 0.28 -59.58 16 21 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 22 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 23 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 25 C -0.11 -1.76 9.95 22.37 0.22 -1.54 16 26 C -0.10 -1.87 9.66 22.37 0.22 -1.65 16 27 C 0.62 15.01 8.48 178.99 1.52 16.53 16 28 O -0.58 -18.92 15.13 -4.68 -0.07 -19.00 16 29 H 0.15 -1.17 8.07 -2.39 -0.02 -1.19 16 30 H 0.07 0.37 8.14 -2.38 -0.02 0.35 16 31 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.30 -3.02 8.06 -2.91 -0.02 -3.04 16 33 H 0.13 4.45 5.50 -2.91 -0.02 4.43 16 34 H 0.12 4.05 6.41 -2.91 -0.02 4.03 16 35 H 0.43 4.20 8.82 -92.71 -0.82 3.38 16 36 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.13 2.26 8.14 -2.38 -0.02 2.24 16 38 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 39 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 40 H 0.06 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 42 H -0.02 -1.05 8.14 -2.38 -0.02 -1.07 16 43 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 44 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 45 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 46 H 0.16 2.30 7.71 -2.91 -0.02 2.28 16 Total: -1.00 -96.87 392.34 5.23 -91.64 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: 0.19 Total: 6.72 kcal Atomic # 6 Polarization: -15.50 SS G_CDS: 8.51 Total: -6.99 kcal Atomic # 7 Polarization: -92.61 SS G_CDS: -5.39 Total: -98.00 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.11 Total: -40.61 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -96.87 5.23 -91.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588162756.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.730 kcal (2) G-P(sol) polarization free energy of solvation -96.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.639 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds