Wall clock time and date at job start Sat Apr 11 2020 07:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99606 * 2 1 4 4 C 1.50697 * 109.46907 * 274.99593 * 3 2 1 5 5 H 1.08000 * 120.00567 * 0.02562 * 4 3 2 6 6 C 1.37886 * 119.99947 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99471 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00302 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46770 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.46979 * 119.99432 * 8 6 4 11 11 H 1.48493 * 109.47064 * 239.99946 * 8 6 4 12 12 S 1.65596 * 119.99883 * 179.97438 * 2 1 3 13 13 O 1.42106 * 106.40131 * 151.20758 * 12 2 1 14 14 O 1.42098 * 106.40186 * 18.28645 * 12 2 1 15 15 N 1.65596 * 107.21868 * 264.74540 * 12 2 1 16 16 C 1.47151 * 120.98374 * 274.93952 * 15 12 2 17 17 C 1.53292 * 108.38378 * 129.44147 * 16 15 12 18 18 O 1.42963 * 109.22500 * 52.30249 * 17 16 15 19 19 C 1.42961 * 114.16532 * 297.41774 * 18 17 16 20 20 C 1.53001 * 109.51155 * 302.65367 * 19 18 17 21 21 C 1.52994 * 117.49950 * 226.11260 * 20 19 18 22 22 C 1.52998 * 117.50047 * 294.77630 * 20 19 18 23 23 C 1.52998 * 109.55112 * 182.53044 * 19 18 17 24 24 C 1.52998 * 117.50135 * 15.05461 * 23 19 18 25 25 C 1.53005 * 117.50168 * 306.39497 * 23 19 18 26 26 C 1.47158 * 120.98038 * 94.91502 * 15 12 2 27 27 H 1.08999 * 109.47471 * 274.99456 * 1 2 3 28 28 H 1.09007 * 109.47172 * 34.99738 * 1 2 3 29 29 H 1.09000 * 109.47387 * 154.99211 * 1 2 3 30 30 H 1.08992 * 109.47362 * 34.99812 * 3 2 1 31 31 H 1.08999 * 109.46404 * 155.00387 * 3 2 1 32 32 H 0.97000 * 119.99356 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.68053 * 249.16555 * 16 15 12 34 34 H 1.08997 * 109.68040 * 9.68153 * 16 15 12 35 35 H 1.09008 * 109.51259 * 172.22353 * 17 16 15 36 36 H 1.09000 * 109.51428 * 292.32514 * 17 16 15 37 37 H 1.08998 * 115.54652 * 80.44372 * 20 19 18 38 38 H 1.08997 * 117.49941 * 215.00648 * 21 20 19 39 39 H 1.09004 * 117.50214 * 0.02564 * 21 20 19 40 40 H 1.08994 * 117.49825 * 359.97105 * 22 20 19 41 41 H 1.08992 * 117.49726 * 144.97952 * 22 20 19 42 42 H 1.09003 * 115.54873 * 160.73255 * 23 19 18 43 43 H 1.08998 * 117.50176 * 0.02562 * 24 23 19 44 44 H 1.09006 * 117.50023 * 145.01956 * 24 23 19 45 45 H 1.08996 * 117.50040 * 214.98135 * 25 23 19 46 46 H 1.08998 * 117.49611 * 359.97438 * 25 23 19 47 47 H 1.08993 * 109.67957 * 110.83673 * 26 15 12 48 48 H 1.08994 * 109.68309 * 350.27966 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9283 1.1938 -2.2332 6 6 3.0006 2.9504 -1.6665 7 7 3.5041 3.6465 -0.6707 8 14 3.1784 3.5667 -3.4209 9 1 2.5301 2.6073 -4.3507 10 1 2.5277 4.8955 -3.5470 11 1 4.6192 3.6869 -3.7596 12 16 2.2930 -1.4341 0.0006 13 8 3.5282 -1.1846 -0.6561 14 8 1.3727 -2.4289 -0.4266 15 7 2.6635 -1.7855 1.5759 16 6 3.8676 -1.2292 2.2131 17 6 3.4587 -0.5919 3.5460 18 8 2.7155 -1.5419 4.3135 19 6 1.4900 -1.9558 3.7048 20 6 0.6125 -0.7310 3.4384 21 6 -0.8630 -0.8198 3.8328 22 6 0.0976 0.0465 4.6513 23 6 0.7538 -2.9183 4.6388 24 6 1.2158 -2.9806 6.0960 25 6 1.5243 -4.1395 5.1448 26 6 1.7980 -2.6629 2.3800 27 1 -0.3634 0.0895 1.0237 28 1 -0.3634 0.8419 -0.5894 29 1 -0.3634 -0.9313 -0.4344 30 1 1.6501 2.0043 0.5894 31 1 3.1857 1.1177 0.4343 32 1 3.9675 4.4801 -0.8473 33 1 4.5891 -2.0262 2.3932 34 1 4.3101 -0.4732 1.5645 35 1 4.3514 -0.2968 4.0975 36 1 2.8415 0.2861 3.3555 37 1 0.8608 -0.1606 2.5434 38 1 -1.5855 -0.3078 3.1972 39 1 -1.2087 -1.7506 4.2824 40 1 0.3835 -0.3149 5.6391 41 1 0.0073 1.1283 4.5544 42 1 -0.3114 -3.0411 4.4428 43 1 2.0440 -2.3355 6.3895 44 1 0.4546 -3.1446 6.8588 45 1 0.9659 -5.0655 5.2821 46 1 2.5555 -4.2574 4.8119 47 1 2.3112 -3.6041 2.5770 48 1 0.8698 -2.8558 1.8424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595359649.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:23 Heat of formation + Delta-G solvation = -47.136895 kcal Electronic energy + Delta-G solvation = -31391.763305 eV Core-core repulsion = 27383.220762 eV Total energy + Delta-G solvation = -4008.542543 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.50126 -37.05758 -36.68921 -36.01321 -35.49969 -35.20576 -34.57005 -32.46950 -30.94225 -27.82195 -27.25632 -25.14748 -24.58780 -22.98682 -22.62280 -22.32190 -22.23695 -21.61186 -18.79981 -18.42681 -17.49665 -16.89468 -16.65019 -16.45377 -16.06417 -15.97923 -15.40983 -14.86593 -14.54239 -14.36444 -14.29645 -13.96999 -13.67364 -13.46245 -13.17111 -12.90687 -12.37897 -12.31974 -12.18765 -11.85134 -11.80340 -11.65108 -11.52165 -11.49534 -11.26925 -11.17483 -11.13084 -11.11259 -10.73904 -10.64174 -10.61623 -10.42396 -10.35395 -10.22213 -10.09714 -10.01255 -9.88967 -9.75494 -8.59815 -8.47932 -8.09581 -6.10716 -4.14210 1.11396 3.28570 3.33191 3.36512 3.42328 3.51477 3.69512 3.96851 4.02067 4.41798 4.43567 4.53641 4.67596 4.86478 4.92002 4.96506 5.01444 5.02150 5.12643 5.24527 5.33297 5.34168 5.41231 5.44799 5.54006 5.57507 5.62948 5.64022 5.72476 5.75124 5.85803 5.91523 5.99295 6.03015 6.07015 6.12569 6.13856 6.19299 6.29365 6.33845 6.47384 6.68308 7.13932 7.22692 7.33654 7.54708 7.87424 8.15824 8.88576 9.51376 10.97797 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.004060 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.989360 B = 6894.305425 C = 7157.874104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.996 5.996 3 C 0.260 3.740 4 C -0.527 4.527 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.896 5.896 8 Si 0.896 3.104 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.282 1.282 12 S 2.778 3.222 13 O -0.960 6.960 14 O -0.995 6.995 15 N -1.012 6.012 16 C 0.090 3.910 17 C 0.050 3.950 18 O -0.365 6.365 19 C 0.171 3.829 20 C -0.187 4.187 21 C -0.177 4.177 22 C -0.161 4.161 23 C -0.153 4.153 24 C -0.161 4.161 25 C -0.173 4.173 26 C 0.109 3.891 27 H 0.040 0.960 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.034 0.966 31 H 0.033 0.967 32 H 0.263 0.737 33 H 0.073 0.927 34 H 0.101 0.899 35 H 0.102 0.898 36 H 0.064 0.936 37 H 0.118 0.882 38 H 0.094 0.906 39 H 0.100 0.900 40 H 0.096 0.904 41 H 0.092 0.908 42 H 0.122 0.878 43 H 0.105 0.895 44 H 0.088 0.912 45 H 0.092 0.908 46 H 0.097 0.903 47 H 0.075 0.925 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.955 -11.031 14.410 19.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 N -0.838 5.838 3 C 0.138 3.862 4 C -0.566 4.566 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.724 3.276 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.788 3.212 13 O -0.943 6.943 14 O -0.979 6.979 15 N -0.850 5.850 16 C -0.036 4.036 17 C -0.028 4.028 18 O -0.284 6.284 19 C 0.130 3.870 20 C -0.205 4.205 21 C -0.214 4.214 22 C -0.198 4.198 23 C -0.171 4.171 24 C -0.198 4.198 25 C -0.210 4.210 26 C -0.017 4.017 27 H 0.059 0.941 28 H 0.094 0.906 29 H 0.086 0.914 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.092 0.908 34 H 0.119 0.881 35 H 0.120 0.880 36 H 0.083 0.917 37 H 0.136 0.864 38 H 0.113 0.887 39 H 0.118 0.882 40 H 0.115 0.885 41 H 0.110 0.890 42 H 0.140 0.860 43 H 0.123 0.877 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.115 0.885 47 H 0.093 0.907 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.554 -11.455 13.840 18.805 hybrid contribution 0.027 0.940 -0.950 1.337 sum -5.528 -10.516 12.889 17.529 Atomic orbital electron populations 1.21408 0.80153 1.03230 1.00563 1.57690 1.14295 1.23344 1.88507 1.19019 0.90607 0.78887 0.97730 1.21520 1.35966 1.06235 0.92918 0.92114 1.24920 0.95088 0.96475 0.97470 1.69920 1.37401 1.15334 1.30846 0.86464 0.78022 0.78488 0.84631 1.19646 1.20972 1.20788 1.02116 0.73479 0.72887 0.72749 1.93630 1.44327 1.85283 1.71089 1.93507 1.65164 1.59026 1.80178 1.58573 1.33219 1.61037 1.32176 1.22052 0.86674 0.99267 0.95636 1.22926 0.96374 0.91661 0.91880 1.87893 1.33186 1.61702 1.45570 1.20539 0.83967 0.91356 0.91172 1.22950 0.96161 1.00407 1.00994 1.23141 0.91988 1.02351 1.03905 1.22815 1.03116 0.98044 0.95798 1.22384 0.99165 0.99245 0.96330 1.22847 1.03581 1.01820 0.91594 1.22937 1.01509 0.92401 1.04156 1.21879 0.95136 0.92909 0.91764 0.94116 0.90585 0.91390 0.94799 0.94927 0.92743 0.90848 0.88083 0.87994 0.91723 0.86437 0.88749 0.88184 0.88514 0.88950 0.85996 0.87697 0.89316 0.88992 0.88460 0.90677 0.88546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.57 10.44 59.85 0.63 2.20 16 2 N -1.00 -20.13 2.77 -123.05 -0.34 -20.47 16 3 C 0.26 6.25 5.10 -5.19 -0.03 6.22 16 4 C -0.53 -14.53 9.38 -34.44 -0.32 -14.85 16 5 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 7 N -0.90 -25.48 13.29 55.43 0.74 -24.74 16 8 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 9 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 S 2.78 55.55 6.03 -107.50 -0.65 54.90 16 13 O -0.96 -22.98 16.28 -57.17 -0.93 -23.91 16 14 O -0.99 -20.57 15.26 -57.17 -0.87 -21.44 16 15 N -1.01 -15.97 2.93 -113.06 -0.33 -16.30 16 16 C 0.09 1.30 6.55 -3.54 -0.02 1.27 16 17 C 0.05 0.63 6.70 37.31 0.25 0.88 16 18 O -0.36 -4.58 8.58 -35.23 -0.30 -4.88 16 19 C 0.17 2.03 0.72 -90.47 -0.07 1.96 16 20 C -0.19 -2.29 3.61 -90.62 -0.33 -2.62 16 21 C -0.18 -1.80 9.71 -26.70 -0.26 -2.06 16 22 C -0.16 -1.76 9.94 -26.69 -0.27 -2.02 16 23 C -0.15 -1.49 3.98 -90.62 -0.36 -1.85 16 24 C -0.16 -1.45 9.58 -26.69 -0.26 -1.71 16 25 C -0.17 -1.55 9.59 -26.69 -0.26 -1.81 16 26 C 0.11 1.47 5.23 -3.53 -0.02 1.45 16 27 H 0.04 0.58 6.55 -51.93 -0.34 0.24 16 28 H 0.08 1.31 8.11 -51.92 -0.42 0.89 16 29 H 0.07 1.10 6.88 -51.93 -0.36 0.74 16 30 H 0.03 0.83 8.11 -51.93 -0.42 0.41 16 31 H 0.03 0.82 7.20 -51.93 -0.37 0.45 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.10 1.63 6.83 -51.93 -0.35 1.28 16 35 H 0.10 1.10 8.14 -51.92 -0.42 0.67 16 36 H 0.06 0.90 6.82 -51.93 -0.35 0.55 16 37 H 0.12 1.70 5.35 -51.93 -0.28 1.42 16 38 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 39 H 0.10 0.87 5.49 -51.93 -0.29 0.59 16 40 H 0.10 1.01 7.71 -51.93 -0.40 0.61 16 41 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 42 H 0.12 1.06 5.73 -51.93 -0.30 0.76 16 43 H 0.10 1.07 7.16 -51.93 -0.37 0.70 16 44 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.09 0.70 8.14 -51.93 -0.42 0.27 16 46 H 0.10 0.96 7.99 -51.93 -0.42 0.54 16 47 H 0.07 0.93 7.54 -51.93 -0.39 0.54 16 48 H 0.10 1.31 7.11 -51.93 -0.37 0.94 16 LS Contribution 381.53 15.07 5.75 5.75 Total: -1.00 -32.12 381.53 -10.88 -43.00 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: -7.51 Total: 2.74 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: -1.40 Total: -11.28 kcal Atomic # 7 Polarization: -61.59 SS G_CDS: 0.06 Total: -61.52 kcal Atomic # 8 Polarization: -48.12 SS G_CDS: -2.11 Total: -50.23 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 55.55 SS G_CDS: -0.65 Total: 54.90 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.12 -10.88 -43.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595359649.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.139 kcal (2) G-P(sol) polarization free energy of solvation -32.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds