Wall clock time and date at job start Sat Apr 11 2020 07:11:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46500 * 119.99606 * 2 1 4 4 C 1.50697 * 109.46907 * 274.99593 * 3 2 1 5 5 H 1.08000 * 120.00567 * 0.02562 * 4 3 2 6 6 C 1.37886 * 119.99947 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99471 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00302 * 180.02562 * 6 4 3 9 9 H 1.48503 * 109.46770 * 359.97438 * 8 6 4 10 10 H 1.48494 * 109.46979 * 119.99432 * 8 6 4 11 11 H 1.48493 * 109.47064 * 239.99946 * 8 6 4 12 12 S 1.65596 * 119.99883 * 179.97438 * 2 1 3 13 13 O 1.42106 * 106.40131 * 151.20758 * 12 2 1 14 14 O 1.42098 * 106.40186 * 18.28645 * 12 2 1 15 15 N 1.65596 * 107.21868 * 264.74540 * 12 2 1 16 16 C 1.47151 * 120.98374 * 274.93952 * 15 12 2 17 17 C 1.53292 * 108.38378 * 129.44147 * 16 15 12 18 18 O 1.42963 * 109.22500 * 52.30249 * 17 16 15 19 19 C 1.42961 * 114.16532 * 297.41774 * 18 17 16 20 20 C 1.53001 * 109.51155 * 302.65367 * 19 18 17 21 21 C 1.52994 * 117.49950 * 226.11260 * 20 19 18 22 22 C 1.52998 * 117.50047 * 294.77630 * 20 19 18 23 23 C 1.52998 * 109.55112 * 182.53044 * 19 18 17 24 24 C 1.52998 * 117.50135 * 15.05461 * 23 19 18 25 25 C 1.53005 * 117.50168 * 306.39497 * 23 19 18 26 26 C 1.47158 * 120.98038 * 94.91502 * 15 12 2 27 27 H 1.08999 * 109.47471 * 274.99456 * 1 2 3 28 28 H 1.09007 * 109.47172 * 34.99738 * 1 2 3 29 29 H 1.09000 * 109.47387 * 154.99211 * 1 2 3 30 30 H 1.08992 * 109.47362 * 34.99812 * 3 2 1 31 31 H 1.08999 * 109.46404 * 155.00387 * 3 2 1 32 32 H 0.97000 * 119.99356 * 180.02562 * 7 6 4 33 33 H 1.09001 * 109.68053 * 249.16555 * 16 15 12 34 34 H 1.08997 * 109.68040 * 9.68153 * 16 15 12 35 35 H 1.09008 * 109.51259 * 172.22353 * 17 16 15 36 36 H 1.09000 * 109.51428 * 292.32514 * 17 16 15 37 37 H 1.08998 * 115.54652 * 80.44372 * 20 19 18 38 38 H 1.08997 * 117.49941 * 215.00648 * 21 20 19 39 39 H 1.09004 * 117.50214 * 0.02564 * 21 20 19 40 40 H 1.08994 * 117.49825 * 359.97105 * 22 20 19 41 41 H 1.08992 * 117.49726 * 144.97952 * 22 20 19 42 42 H 1.09003 * 115.54873 * 160.73255 * 23 19 18 43 43 H 1.08998 * 117.50176 * 0.02562 * 24 23 19 44 44 H 1.09006 * 117.50023 * 145.01956 * 24 23 19 45 45 H 1.08996 * 117.50040 * 214.98135 * 25 23 19 46 46 H 1.08998 * 117.49611 * 359.97438 * 25 23 19 47 47 H 1.08993 * 109.67957 * 110.83673 * 26 15 12 48 48 H 1.08994 * 109.68309 * 350.27966 * 26 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.3414 1.7656 -1.4154 5 1 1.9283 1.1938 -2.2332 6 6 3.0006 2.9504 -1.6665 7 7 3.5041 3.6465 -0.6707 8 14 3.1784 3.5667 -3.4209 9 1 2.5301 2.6073 -4.3507 10 1 2.5277 4.8955 -3.5470 11 1 4.6192 3.6869 -3.7596 12 16 2.2930 -1.4341 0.0006 13 8 3.5282 -1.1846 -0.6561 14 8 1.3727 -2.4289 -0.4266 15 7 2.6635 -1.7855 1.5759 16 6 3.8676 -1.2292 2.2131 17 6 3.4587 -0.5919 3.5460 18 8 2.7155 -1.5419 4.3135 19 6 1.4900 -1.9558 3.7048 20 6 0.6125 -0.7310 3.4384 21 6 -0.8630 -0.8198 3.8328 22 6 0.0976 0.0465 4.6513 23 6 0.7538 -2.9183 4.6388 24 6 1.2158 -2.9806 6.0960 25 6 1.5243 -4.1395 5.1448 26 6 1.7980 -2.6629 2.3800 27 1 -0.3634 0.0895 1.0237 28 1 -0.3634 0.8419 -0.5894 29 1 -0.3634 -0.9313 -0.4344 30 1 1.6501 2.0043 0.5894 31 1 3.1857 1.1177 0.4343 32 1 3.9675 4.4801 -0.8473 33 1 4.5891 -2.0262 2.3932 34 1 4.3101 -0.4732 1.5645 35 1 4.3514 -0.2968 4.0975 36 1 2.8415 0.2861 3.3555 37 1 0.8608 -0.1606 2.5434 38 1 -1.5855 -0.3078 3.1972 39 1 -1.2087 -1.7506 4.2824 40 1 0.3835 -0.3149 5.6391 41 1 0.0073 1.1283 4.5544 42 1 -0.3114 -3.0411 4.4428 43 1 2.0440 -2.3355 6.3895 44 1 0.4546 -3.1446 6.8588 45 1 0.9659 -5.0655 5.2821 46 1 2.5555 -4.2574 4.8119 47 1 2.3112 -3.6041 2.5770 48 1 0.8698 -2.8558 1.8424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595359649.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:23 Heat of formation + Delta-G solvation = -67.725616 kcal Electronic energy + Delta-G solvation = -31392.656099 eV Core-core repulsion = 27383.220762 eV Total energy + Delta-G solvation = -4009.435337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 344.160 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.45306 -38.44983 -37.93710 -37.30416 -36.93313 -36.71187 -35.72024 -34.52297 -31.97588 -29.69763 -28.35838 -26.84493 -25.64387 -24.27733 -23.85048 -23.50717 -22.99801 -22.50669 -20.10365 -19.51273 -19.11320 -18.52715 -18.31676 -17.59857 -17.38692 -17.04754 -16.72151 -16.42129 -15.92141 -15.49901 -15.27150 -15.17559 -15.04165 -14.94937 -14.34348 -14.07080 -14.00213 -13.86311 -13.60019 -13.38380 -13.25954 -13.06461 -12.97872 -12.97043 -12.67739 -12.51528 -12.45468 -12.39606 -12.17242 -12.04799 -12.02717 -11.75289 -11.45369 -11.41172 -11.22004 -11.05864 -10.96311 -10.83508 -10.60649 -9.81133 -9.72750 -8.22474 -6.33479 -0.45704 1.36347 1.39257 1.50359 1.89266 2.37035 2.48764 2.58516 2.94371 3.07124 3.08949 3.28854 3.51033 3.73074 3.77022 3.86857 4.02629 4.08757 4.15368 4.21182 4.22823 4.24927 4.32799 4.44963 4.51310 4.59266 4.63316 4.69577 4.74663 4.77659 4.85419 4.92062 4.94823 5.00133 5.04903 5.10914 5.14645 5.18351 5.28276 5.35833 5.37714 5.41406 5.47857 5.49903 5.67941 5.90506 6.08838 6.23255 6.74121 7.35314 8.84934 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.017237 B = 0.004060 C = 0.003911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.989360 B = 6894.305425 C = 7157.874104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -1.000 6.000 3 C 0.278 3.722 4 C -0.548 4.548 5 H 0.049 0.951 6 C 0.016 3.984 7 N -0.920 5.920 8 Si 0.953 3.047 9 H -0.272 1.272 10 H -0.269 1.269 11 H -0.279 1.279 12 S 2.790 3.210 13 O -1.006 7.006 14 O -1.003 7.003 15 N -1.004 6.004 16 C 0.086 3.914 17 C 0.056 3.944 18 O -0.363 6.363 19 C 0.174 3.826 20 C -0.207 4.207 21 C -0.162 4.162 22 C -0.157 4.157 23 C -0.158 4.158 24 C -0.155 4.155 25 C -0.170 4.170 26 C 0.102 3.898 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.076 0.924 30 H 0.026 0.974 31 H 0.016 0.984 32 H 0.267 0.733 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.125 0.875 36 H 0.049 0.951 37 H 0.092 0.908 38 H 0.097 0.903 39 H 0.120 0.880 40 H 0.104 0.896 41 H 0.085 0.915 42 H 0.138 0.862 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.110 0.890 46 H 0.086 0.914 47 H 0.088 0.912 48 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.143 -12.005 15.792 21.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.841 5.841 3 C 0.155 3.845 4 C -0.588 4.588 5 H 0.067 0.933 6 C -0.183 4.183 7 N -0.560 5.560 8 Si 0.778 3.222 9 H -0.197 1.197 10 H -0.195 1.195 11 H -0.205 1.205 12 S 2.800 3.200 13 O -0.990 6.990 14 O -0.987 6.987 15 N -0.845 5.845 16 C -0.040 4.040 17 C -0.022 4.022 18 O -0.282 6.282 19 C 0.133 3.867 20 C -0.226 4.226 21 C -0.198 4.198 22 C -0.194 4.194 23 C -0.177 4.177 24 C -0.192 4.192 25 C -0.207 4.207 26 C -0.023 4.023 27 H 0.087 0.913 28 H 0.088 0.912 29 H 0.095 0.905 30 H 0.045 0.955 31 H 0.034 0.966 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.142 0.858 36 H 0.068 0.932 37 H 0.111 0.889 38 H 0.115 0.885 39 H 0.138 0.862 40 H 0.122 0.878 41 H 0.104 0.896 42 H 0.155 0.845 43 H 0.110 0.890 44 H 0.125 0.875 45 H 0.128 0.872 46 H 0.105 0.895 47 H 0.106 0.894 48 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.768 -12.437 15.220 20.788 hybrid contribution 0.389 1.187 -1.318 1.816 sum -6.379 -11.250 13.902 18.987 Atomic orbital electron populations 1.21586 0.78250 1.03393 1.02379 1.57547 1.15561 1.21984 1.89025 1.18556 0.90116 0.80103 0.95738 1.21835 1.36196 1.06578 0.94165 0.93309 1.25668 0.94798 0.96707 1.01177 1.69996 1.37793 1.15724 1.32504 0.85591 0.78045 0.78396 0.80197 1.19692 1.19456 1.20481 1.01495 0.72463 0.72556 0.73458 1.93565 1.46345 1.85861 1.73184 1.93481 1.65196 1.59013 1.81034 1.58189 1.33981 1.61258 1.31048 1.22191 0.86477 0.99425 0.95880 1.22877 0.97046 0.91018 0.91237 1.87907 1.33541 1.61392 1.45342 1.20567 0.83786 0.91572 0.90797 1.22877 0.98024 1.00900 1.00786 1.23258 0.90691 1.02879 1.02975 1.22803 1.03207 0.97769 0.95620 1.22398 0.99674 0.99210 0.96381 1.22857 1.03505 1.01335 0.91477 1.22992 1.01070 0.92962 1.03688 1.22174 0.94794 0.93106 0.92202 0.91320 0.91240 0.90501 0.95549 0.96600 0.92363 0.89003 0.90387 0.85770 0.93223 0.88947 0.88470 0.86169 0.87804 0.89625 0.84485 0.89038 0.87461 0.87210 0.89526 0.89432 0.88535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.01 10.44 127.77 1.33 4.34 16 2 N -1.00 -41.27 2.77 -543.23 -1.51 -42.77 16 3 C 0.28 13.85 5.10 85.63 0.44 14.29 16 4 C -0.55 -30.96 9.38 25.60 0.24 -30.72 16 5 H 0.05 2.80 7.81 -2.91 -0.02 2.78 16 6 C 0.02 0.92 5.46 84.66 0.46 1.38 16 7 N -0.92 -53.04 13.29 21.45 0.28 -52.76 16 8 Si 0.95 44.61 29.54 68.60 2.03 46.64 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 11 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 12 S 2.79 113.64 6.03 -56.49 -0.34 113.30 16 13 O -1.01 -49.93 16.28 -128.00 -2.08 -52.01 16 14 O -1.00 -41.41 15.26 -128.00 -1.95 -43.36 16 15 N -1.00 -31.70 2.93 -511.63 -1.50 -33.19 16 16 C 0.09 2.51 6.55 86.35 0.57 3.07 16 17 C 0.06 1.42 6.70 72.08 0.48 1.90 16 18 O -0.36 -8.59 8.58 -148.98 -1.28 -9.87 16 19 C 0.17 3.83 0.72 -10.69 -0.01 3.82 16 20 C -0.21 -4.82 3.61 -10.80 -0.04 -4.85 16 21 C -0.16 -2.89 9.71 30.62 0.30 -2.59 16 22 C -0.16 -3.17 9.94 30.62 0.30 -2.86 16 23 C -0.16 -2.62 3.98 -10.79 -0.04 -2.66 16 24 C -0.15 -2.32 9.58 30.62 0.29 -2.03 16 25 C -0.17 -2.56 9.59 30.62 0.29 -2.27 16 26 C 0.10 2.62 5.23 86.35 0.45 3.07 16 27 H 0.07 1.91 6.55 -2.39 -0.02 1.90 16 28 H 0.07 2.41 8.11 -2.38 -0.02 2.39 16 29 H 0.08 2.44 6.88 -2.39 -0.02 2.42 16 30 H 0.03 1.34 8.11 -2.39 -0.02 1.32 16 31 H 0.02 0.85 7.20 -2.39 -0.02 0.83 16 32 H 0.27 14.48 8.31 -92.71 -0.77 13.71 16 33 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 34 H 0.08 2.66 6.83 -2.39 -0.02 2.64 16 35 H 0.12 2.54 8.14 -2.38 -0.02 2.52 16 36 H 0.05 1.41 6.82 -2.39 -0.02 1.39 16 37 H 0.09 2.65 5.35 -2.39 -0.01 2.63 16 38 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.12 1.65 5.49 -2.39 -0.01 1.64 16 40 H 0.10 1.94 7.71 -2.39 -0.02 1.92 16 41 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 42 H 0.14 1.85 5.73 -2.39 -0.01 1.84 16 43 H 0.09 1.66 7.16 -2.39 -0.02 1.64 16 44 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 45 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 46 H 0.09 1.51 7.99 -2.39 -0.02 1.49 16 47 H 0.09 2.03 7.54 -2.39 -0.02 2.01 16 48 H 0.10 2.48 7.11 -2.39 -0.02 2.46 16 Total: -1.00 -69.36 381.53 -0.32 -69.67 By element: Atomic # 1 Polarization: 19.48 SS G_CDS: 0.96 Total: 20.44 kcal Atomic # 6 Polarization: -21.17 SS G_CDS: 5.07 Total: -16.10 kcal Atomic # 7 Polarization: -126.01 SS G_CDS: -2.72 Total: -128.72 kcal Atomic # 8 Polarization: -99.92 SS G_CDS: -5.31 Total: -105.24 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 2.03 Total: 46.64 kcal Atomic # 16 Polarization: 113.64 SS G_CDS: -0.34 Total: 113.30 kcal Total: -69.36 -0.32 -69.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595359649.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.945 kcal (2) G-P(sol) polarization free energy of solvation -69.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds