Wall clock time and date at job start Sat Apr 11 2020 07:11:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.37843 * 120.00307 * 2 1 4 4 N 1.32568 * 120.89387 * 0.02562 * 3 2 1 5 5 C 1.32348 * 121.50235 * 179.97438 * 4 3 2 6 6 N 1.31158 * 122.95900 * 359.97438 * 5 4 3 7 7 C 1.34153 * 120.49201 * 359.97438 * 6 5 4 8 8 C 1.40104 * 121.83086 * 180.26055 * 7 6 5 9 9 C 1.38570 * 119.36427 * 180.26899 * 8 7 6 10 10 C 1.47993 * 119.72222 * 179.77646 * 9 8 7 11 11 O 1.21540 * 119.99470 * 223.96121 * 10 9 8 12 12 N 1.34775 * 120.00207 * 43.96048 * 10 9 8 13 13 C 1.46504 * 119.99879 * 3.06542 * 12 10 9 14 14 C 1.50698 * 109.47216 * 263.34863 * 13 12 10 15 15 H 1.07997 * 120.00436 * 0.02562 * 14 13 12 16 16 C 1.37883 * 119.99491 * 179.97438 * 14 13 12 17 17 N 1.31508 * 120.00149 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99644 * 180.02562 * 16 14 13 19 19 H 1.48490 * 109.47215 * 90.00188 * 18 16 14 20 20 H 1.48504 * 109.46682 * 210.00409 * 18 16 14 21 21 H 1.48504 * 109.47019 * 329.99870 * 18 16 14 22 22 C 1.46496 * 119.99798 * 183.07641 * 12 10 9 23 23 C 1.53004 * 109.46516 * 263.51602 * 22 12 10 24 24 O 1.42899 * 109.47113 * 65.00633 * 23 22 12 25 25 C 1.42905 * 114.00166 * 180.02562 * 24 23 22 26 26 C 1.40393 * 120.55620 * 359.49036 * 9 8 7 27 27 C 1.36116 * 120.76926 * 0.23965 * 26 9 8 28 28 C 1.40005 * 119.86596 * 0.02562 * 27 26 9 29 29 H 1.08998 * 109.47305 * 60.00136 * 1 2 3 30 30 H 1.09001 * 109.47823 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47493 * 300.00083 * 1 2 3 32 32 H 0.97000 * 119.99472 * 179.97438 * 2 1 3 33 33 H 1.08006 * 118.52081 * 180.02562 * 5 4 3 34 34 H 1.08004 * 120.31293 * 0.02562 * 8 7 6 35 35 H 1.09004 * 109.46911 * 23.35644 * 13 12 10 36 36 H 1.09003 * 109.46602 * 143.34901 * 13 12 10 37 37 H 0.97004 * 120.00432 * 179.97438 * 17 16 14 38 38 H 1.08996 * 109.47423 * 23.51293 * 22 12 10 39 39 H 1.09006 * 109.47214 * 143.52342 * 22 12 10 40 40 H 1.09008 * 109.46969 * 185.00331 * 23 22 12 41 41 H 1.08996 * 109.47282 * 304.99900 * 23 22 12 42 42 H 1.08998 * 109.46773 * 299.99662 * 25 24 23 43 43 H 1.08995 * 109.47187 * 59.99240 * 25 24 23 44 44 H 1.08997 * 109.46923 * 179.97438 * 25 24 23 45 45 H 1.07999 * 119.61815 * 180.25906 * 26 9 8 46 46 H 1.08002 * 120.06793 * 180.02562 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1542 1.1937 0.0000 4 7 1.5095 2.3520 0.0005 5 6 2.1590 3.5051 0.0010 6 7 3.4681 3.5867 0.0016 7 6 4.2194 2.4752 0.0021 8 6 5.6193 2.5296 0.0081 9 6 6.3452 1.3493 0.0027 10 6 7.8244 1.3975 0.0040 11 8 8.4569 0.6637 -0.7299 12 7 8.4700 2.2552 0.8189 13 6 7.7106 3.0918 1.7515 14 6 7.4930 4.4529 1.1424 15 1 7.8812 4.6728 0.1589 16 6 6.7975 5.4173 1.8406 17 7 6.3244 5.1494 3.0380 18 14 6.5272 7.1043 1.0853 19 1 5.2593 7.1032 0.3124 20 1 6.4488 8.1225 2.1636 21 1 7.6587 7.4284 0.1798 22 6 9.9311 2.3509 0.7719 23 6 10.5351 1.4743 1.8709 24 8 10.2374 0.1025 1.6034 25 6 10.7586 -0.8057 2.5759 26 6 5.6893 0.1080 0.0022 27 6 4.3299 0.0387 0.0020 28 6 3.5719 1.2158 0.0018 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3635 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.9499 -0.8401 0.0004 33 1 1.5853 4.4202 0.0018 34 1 6.1278 3.4825 0.0129 35 1 6.7462 2.6261 1.9547 36 1 8.2675 3.1952 2.6828 37 1 5.8354 5.8280 3.5293 38 1 10.2864 2.0106 -0.2007 39 1 10.2325 3.3870 0.9269 40 1 11.6160 1.6138 1.8939 41 1 10.1118 1.7568 2.8347 42 1 11.8440 -0.7136 2.6139 43 1 10.3395 -0.5704 3.5541 44 1 10.4895 -1.8256 2.3014 45 1 6.2701 -0.8026 0.0022 46 1 3.8371 -0.9223 0.0019 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597135466.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:25 Heat of formation + Delta-G solvation = -17.094549 kcal Electronic energy + Delta-G solvation = -30736.994105 eV Core-core repulsion = 26626.603096 eV Total energy + Delta-G solvation = -4110.391009 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.29365 -40.92557 -38.80459 -38.06222 -37.56129 -36.79477 -34.59390 -33.58051 -32.83828 -31.24824 -30.69900 -29.06428 -27.71409 -27.10277 -25.53076 -25.35935 -24.96821 -23.54179 -22.69510 -21.07287 -19.36386 -19.05459 -18.74222 -18.36004 -17.63810 -17.56641 -17.02388 -16.61229 -16.55916 -16.25546 -16.21179 -15.82121 -15.75249 -15.30912 -15.04846 -14.66491 -14.60248 -14.57855 -14.21715 -13.80768 -13.56743 -13.43676 -13.15216 -13.05971 -12.97484 -12.91224 -12.69076 -12.62174 -12.54694 -12.35756 -12.05939 -11.92671 -11.69710 -11.54689 -10.90583 -10.57085 -10.54301 -10.40122 -10.07482 -9.91489 -9.46686 -8.75246 -8.18874 -6.30559 -0.59959 -0.30338 0.99780 1.42298 1.49596 1.52324 1.59886 2.00923 2.15620 2.32329 2.48356 2.95890 3.12153 3.19431 3.27104 3.32974 3.57596 3.71432 3.77574 4.15768 4.18223 4.24304 4.31169 4.41762 4.48177 4.50782 4.55120 4.55549 4.63793 4.72149 4.74919 4.83109 4.88564 4.96581 5.01853 5.03733 5.12177 5.21858 5.29236 5.46231 5.62105 5.68703 5.81871 5.86320 6.04350 6.06400 6.32683 6.53887 6.65074 6.79713 7.26704 7.40195 7.41231 8.86205 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.008664 B = 0.004764 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3230.984214 B = 5876.047073 C = 8438.828650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.686 5.686 3 C 0.465 3.535 4 N -0.603 5.603 5 C 0.332 3.668 6 N -0.573 5.573 7 C 0.154 3.846 8 C -0.078 4.078 9 C -0.102 4.102 10 C 0.556 3.444 11 O -0.571 6.571 12 N -0.587 5.587 13 C 0.254 3.746 14 C -0.542 4.542 15 H 0.057 0.943 16 C 0.042 3.958 17 N -0.908 5.908 18 Si 0.942 3.058 19 H -0.276 1.276 20 H -0.281 1.281 21 H -0.267 1.267 22 C 0.115 3.885 23 C 0.052 3.948 24 O -0.406 6.406 25 C 0.027 3.973 26 C -0.096 4.096 27 C -0.070 4.070 28 C -0.193 4.193 29 H 0.057 0.943 30 H 0.113 0.887 31 H 0.054 0.946 32 H 0.426 0.574 33 H 0.214 0.786 34 H 0.161 0.839 35 H 0.022 0.978 36 H 0.020 0.980 37 H 0.265 0.735 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.084 0.916 41 H 0.044 0.956 42 H 0.056 0.944 43 H 0.039 0.961 44 H 0.090 0.910 45 H 0.146 0.854 46 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.896 -12.677 -2.056 14.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.319 5.319 3 C 0.207 3.793 4 N -0.332 5.332 5 C 0.041 3.959 6 N -0.293 5.293 7 C 0.031 3.969 8 C -0.097 4.097 9 C -0.108 4.108 10 C 0.345 3.655 11 O -0.452 6.452 12 N -0.316 5.316 13 C 0.133 3.867 14 C -0.580 4.580 15 H 0.075 0.925 16 C -0.161 4.161 17 N -0.546 5.546 18 Si 0.768 3.232 19 H -0.201 1.201 20 H -0.207 1.207 21 H -0.191 1.191 22 C -0.008 4.008 23 C -0.026 4.026 24 O -0.325 6.325 25 C -0.069 4.069 26 C -0.115 4.115 27 C -0.090 4.090 28 C -0.201 4.201 29 H 0.075 0.925 30 H 0.131 0.869 31 H 0.072 0.928 32 H 0.265 0.735 33 H 0.230 0.770 34 H 0.178 0.822 35 H 0.040 0.960 36 H 0.038 0.962 37 H 0.075 0.925 38 H 0.097 0.903 39 H 0.120 0.880 40 H 0.102 0.898 41 H 0.062 0.938 42 H 0.075 0.925 43 H 0.058 0.942 44 H 0.109 0.891 45 H 0.164 0.836 46 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.351 -12.115 -2.407 13.889 hybrid contribution 0.713 0.531 0.315 0.943 sum -5.638 -11.584 -2.092 13.052 Atomic orbital electron populations 1.21767 0.76713 1.04322 1.02068 1.44292 1.08225 1.03590 1.75839 1.18806 0.86574 0.88531 0.85367 1.67943 1.40585 0.97586 1.27054 1.24988 0.87363 0.95584 0.87938 1.68795 1.08245 1.31366 1.20846 1.18818 0.94094 0.88559 0.95447 1.22348 0.92059 1.00848 0.94453 1.20097 0.93307 0.94808 1.02576 1.18448 0.87398 0.79653 0.80008 1.90660 1.68596 1.43089 1.42870 1.48017 1.07286 1.38401 1.37886 1.19159 0.91008 0.88731 0.87757 1.21428 1.36131 0.97549 1.02905 0.92492 1.25444 0.94375 1.01515 0.94754 1.69993 1.36346 1.35593 1.12668 0.85787 0.78957 0.80067 0.78431 1.20147 1.20685 1.19145 1.21564 0.79375 1.00037 0.99812 1.22957 0.99880 0.81891 0.97839 1.88023 1.78323 1.16474 1.49726 1.22867 0.98587 0.93813 0.91619 1.20932 0.95015 0.96272 0.99302 1.20839 0.92805 0.97394 0.97976 1.19285 0.94164 0.96048 1.10591 0.92477 0.86868 0.92769 0.73467 0.77010 0.82237 0.95962 0.96212 0.92549 0.90259 0.87961 0.89816 0.93751 0.92530 0.94192 0.89111 0.83581 0.80662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.22 10.76 127.77 1.37 2.60 16 2 N -0.69 -12.21 5.78 -365.02 -2.11 -14.32 16 3 C 0.46 13.27 7.55 134.06 1.01 14.28 16 4 N -0.60 -18.85 9.67 -196.69 -1.90 -20.75 16 5 C 0.33 11.53 12.22 180.91 2.21 13.74 16 6 N -0.57 -24.61 10.44 -193.98 -2.03 -26.64 16 7 C 0.15 6.54 6.61 40.07 0.26 6.81 16 8 C -0.08 -3.57 7.59 22.80 0.17 -3.39 16 9 C -0.10 -4.31 4.92 -20.09 -0.10 -4.41 16 10 C 0.56 25.08 7.06 86.83 0.61 25.69 16 11 O -0.57 -27.08 16.23 -3.84 -0.06 -27.15 16 12 N -0.59 -25.86 2.42 -829.38 -2.00 -27.87 16 13 C 0.25 12.51 4.67 85.63 0.40 12.91 16 14 C -0.54 -28.26 6.38 25.60 0.16 -28.10 16 15 H 0.06 3.01 7.81 -2.91 -0.02 2.99 16 16 C 0.04 2.22 5.46 84.66 0.46 2.68 16 17 N -0.91 -50.98 13.29 21.45 0.28 -50.70 16 18 Si 0.94 43.29 29.54 68.60 2.03 45.31 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 22 C 0.11 4.28 5.87 86.38 0.51 4.79 16 23 C 0.05 1.66 6.27 71.98 0.45 2.11 16 24 O -0.41 -14.15 10.22 -148.98 -1.52 -15.67 16 25 C 0.03 0.68 11.01 113.37 1.25 1.93 16 26 C -0.10 -3.22 9.57 22.30 0.21 -3.01 16 27 C -0.07 -1.93 9.51 22.20 0.21 -1.71 16 28 C -0.19 -6.45 5.76 -21.14 -0.12 -6.58 16 29 H 0.06 0.83 8.14 -2.39 -0.02 0.82 16 30 H 0.11 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 32 H 0.43 4.94 7.06 -92.71 -0.65 4.28 16 33 H 0.21 5.86 8.06 -2.91 -0.02 5.84 16 34 H 0.16 8.28 4.33 -2.91 -0.01 8.27 16 35 H 0.02 1.20 5.75 -2.38 -0.01 1.19 16 36 H 0.02 1.02 7.91 -2.39 -0.02 1.00 16 37 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 38 H 0.08 3.02 7.28 -2.39 -0.02 3.00 16 39 H 0.10 3.58 8.12 -2.38 -0.02 3.57 16 40 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 41 H 0.04 1.48 7.93 -2.39 -0.02 1.46 16 42 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 43 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 45 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 46 H 0.18 2.80 6.55 -2.91 -0.02 2.78 16 Total: -1.00 -74.26 384.25 2.14 -72.12 By element: Atomic # 1 Polarization: 24.94 SS G_CDS: 0.37 Total: 25.31 kcal Atomic # 6 Polarization: 31.25 SS G_CDS: 9.08 Total: 40.34 kcal Atomic # 7 Polarization: -132.52 SS G_CDS: -7.75 Total: -140.27 kcal Atomic # 8 Polarization: -41.23 SS G_CDS: -1.58 Total: -42.82 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.31 kcal Total: -74.26 2.14 -72.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597135466.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.027 kcal (2) G-P(sol) polarization free energy of solvation -74.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds