Wall clock time and date at job start Sat Apr 11 2020 07:11:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 N 1.46505 * 109.46967 * 270.02099 * 8 7 6 10 10 C 1.46494 * 120.00109 * 269.99636 * 9 8 7 11 11 C 1.34779 * 119.99466 * 90.00339 * 9 8 7 12 12 O 1.21279 * 120.00406 * 359.97438 * 11 9 8 13 13 C 1.50703 * 119.99524 * 179.97438 * 11 9 8 14 14 N 1.46496 * 109.47314 * 179.97438 * 13 11 9 15 15 C 1.35314 * 125.86924 * 124.70901 * 14 13 11 16 16 C 1.35352 * 106.17156 * 179.90714 * 15 14 13 17 17 C 1.50706 * 126.74887 * 180.12923 * 16 15 14 18 18 C 1.50693 * 109.47254 * 125.24633 * 17 16 15 19 19 H 1.07998 * 120.00139 * 0.02562 * 18 17 16 20 20 C 1.37883 * 120.00307 * 179.97438 * 18 17 16 21 21 N 1.31508 * 120.00208 * 180.02562 * 20 18 17 22 22 Si 1.86805 * 119.99654 * 0.02562 * 20 18 17 23 23 H 1.48497 * 109.47186 * 89.99545 * 22 20 18 24 24 H 1.48500 * 109.46709 * 209.99860 * 22 20 18 25 25 H 1.48498 * 109.46853 * 329.99717 * 22 20 18 26 26 N 1.33766 * 106.50182 * 0.35513 * 16 15 14 27 27 N 1.28632 * 108.88203 * 359.77479 * 26 16 15 28 28 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 29 29 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 30 30 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 31 31 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 32 32 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 33 33 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 34 34 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 35 35 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 36 36 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 37 37 H 1.09005 * 109.47005 * 89.99929 * 10 9 8 38 38 H 1.08992 * 109.47463 * 210.00204 * 10 9 8 39 39 H 1.08992 * 109.47237 * 330.00773 * 10 9 8 40 40 H 1.09000 * 109.46988 * 300.00142 * 13 11 9 41 41 H 1.09003 * 109.47160 * 59.99885 * 13 11 9 42 42 H 1.07996 * 126.91211 * 0.02930 * 15 14 13 43 43 H 1.08998 * 109.47011 * 245.25171 * 17 16 15 44 44 H 1.09004 * 109.46960 * 5.24986 * 17 16 15 45 45 H 0.97002 * 119.99991 * 180.02562 * 21 20 18 46 46 H 1.08006 * 120.02917 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 7 6.0473 2.6245 -1.3826 10 6 6.3590 1.3708 -2.0734 11 6 6.2084 3.8022 -2.0180 12 8 5.9500 4.8401 -1.4462 13 6 6.7095 3.8292 -3.4390 14 7 6.7967 5.2171 -3.8998 15 6 7.8997 5.8173 -4.4040 16 6 7.5358 7.0867 -4.7007 17 6 8.4117 8.1608 -5.2926 18 6 7.7655 8.7049 -6.5405 19 1 6.8154 8.3124 -6.8717 20 6 8.3867 9.7044 -7.2590 21 7 7.8225 10.1795 -8.3478 22 14 10.0297 10.3837 -6.6857 23 1 11.1310 9.5992 -7.2996 24 1 10.1472 11.8063 -7.0953 25 1 10.1169 10.2856 -5.2066 26 7 6.2472 7.2019 -4.3606 27 7 5.8389 6.0769 -3.8892 28 6 3.4311 1.2849 -0.0001 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 0.2128 2.3203 -0.0106 33 1 1.3339 4.5114 0.0011 34 1 3.7922 4.6381 0.0002 35 1 5.8760 3.5065 0.5126 36 1 5.9718 1.7291 0.5125 37 1 5.4685 1.0077 -2.5865 38 1 7.1521 1.5441 -2.8006 39 1 6.6880 0.6278 -1.3470 40 1 7.6960 3.3679 -3.4852 41 1 6.0201 3.2773 -4.0780 42 1 8.8738 5.3722 -4.5436 43 1 8.5388 8.9658 -4.5687 44 1 9.3854 7.7392 -5.5419 45 1 8.2598 10.8824 -8.8534 46 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603180278.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 07:11:28 Heat of formation + Delta-G solvation = 70.702868 kcal Electronic energy + Delta-G solvation = -28877.069996 eV Core-core repulsion = 24770.486169 eV Total energy + Delta-G solvation = -4106.583828 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 344.164 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.57368 -40.68229 -39.96127 -37.89648 -35.91513 -34.51590 -33.09307 -32.15456 -31.22379 -30.79659 -28.99348 -27.92752 -27.64398 -27.54245 -25.74819 -23.09801 -22.88419 -22.07774 -21.30055 -20.48249 -19.33534 -18.22337 -17.68015 -17.13071 -16.65750 -16.53623 -16.26542 -16.16664 -16.09158 -15.83951 -15.34437 -14.46901 -14.34002 -14.16346 -13.95400 -13.85367 -13.65004 -13.41077 -13.17836 -13.06011 -12.86221 -12.69008 -12.39356 -12.15415 -12.12328 -12.00656 -11.86225 -11.45248 -11.19993 -11.06466 -10.59323 -10.53179 -10.35446 -10.05077 -9.78229 -9.38444 -9.27252 -9.23481 -9.10350 -8.50335 -8.49400 -8.19303 -5.95554 -3.93132 0.88609 1.16876 2.07308 2.23451 2.46270 2.86088 2.89466 3.34666 3.43246 3.45816 3.49757 3.51606 3.98133 4.33279 4.39698 4.44752 4.50446 4.60305 4.65411 4.70647 4.72417 4.73268 4.82189 4.98013 5.02920 5.08087 5.10043 5.16514 5.21621 5.26533 5.36619 5.38991 5.69524 5.74169 5.95914 5.97365 5.99254 6.18332 6.23221 6.31457 6.41861 6.81736 6.91340 7.02897 7.10256 7.15599 7.27049 7.77947 7.79311 8.62539 9.12946 9.32246 9.63704 11.17990 Molecular weight = 344.16amu Principal moments of inertia in cm(-1) A = 0.022230 B = 0.001976 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1259.271176 B =14167.630107 C =14685.836326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.320 6.320 3 C 0.119 3.881 4 C -0.203 4.203 5 C -0.081 4.081 6 C -0.127 4.127 7 C -0.073 4.073 8 C 0.159 3.841 9 N -0.613 5.613 10 C 0.072 3.928 11 C 0.504 3.496 12 O -0.495 6.495 13 C 0.106 3.894 14 N -0.299 5.299 15 C -0.083 4.083 16 C 0.041 3.959 17 C 0.059 3.941 18 C -0.505 4.505 19 H 0.076 0.924 20 C 0.067 3.933 21 N -0.901 5.901 22 Si 0.876 3.124 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.264 1.264 26 N -0.254 5.254 27 N -0.076 5.076 28 C -0.138 4.138 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.099 0.901 32 H 0.127 0.873 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.078 0.922 40 H 0.129 0.871 41 H 0.122 0.878 42 H 0.183 0.817 43 H 0.038 0.962 44 H 0.031 0.969 45 H 0.263 0.737 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.320 -27.591 19.644 34.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.234 6.234 3 C 0.074 3.926 4 C -0.222 4.222 5 C -0.099 4.099 6 C -0.145 4.145 7 C -0.075 4.075 8 C 0.037 3.963 9 N -0.349 5.349 10 C -0.071 4.071 11 C 0.289 3.711 12 O -0.367 6.367 13 C -0.020 4.020 14 N -0.094 5.094 15 C -0.231 4.231 16 C -0.095 4.095 17 C 0.020 3.980 18 C -0.543 4.543 19 H 0.094 0.906 20 C -0.134 4.134 21 N -0.540 5.540 22 Si 0.704 3.296 23 H -0.203 1.203 24 H -0.213 1.213 25 H -0.189 1.189 26 N -0.122 5.122 27 N -0.055 5.055 28 C -0.157 4.157 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.118 0.882 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.115 0.885 36 H 0.108 0.892 37 H 0.080 0.920 38 H 0.093 0.907 39 H 0.096 0.904 40 H 0.147 0.853 41 H 0.139 0.861 42 H 0.200 0.800 43 H 0.056 0.944 44 H 0.049 0.951 45 H 0.073 0.927 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.807 -26.830 20.155 34.693 hybrid contribution 1.570 -0.029 -0.195 1.582 sum -7.237 -26.859 19.960 34.237 Atomic orbital electron populations 1.23049 0.78345 1.03915 1.01436 1.86051 1.21419 1.26960 1.88937 1.18955 0.92278 0.84129 0.97252 1.21287 1.00047 0.92480 1.08364 1.21025 0.94746 0.97121 0.96987 1.21212 0.93722 0.98795 1.00813 1.19970 0.95906 0.92437 0.99152 1.20377 0.89203 1.04395 0.82362 1.47801 1.66617 1.06197 1.14260 1.21934 1.01238 0.85801 0.98126 1.20472 0.78743 0.83813 0.88080 1.90828 1.47881 1.31646 1.66333 1.21669 1.05598 0.80473 0.94278 1.46606 1.09045 1.10416 1.43359 1.23255 0.93983 0.95807 1.10044 1.22465 0.92457 0.94817 0.99771 1.18151 0.92595 0.90839 0.96373 1.20927 1.07743 1.19538 1.06127 0.90553 1.24978 0.97545 0.96117 0.94758 1.69903 1.39119 1.28341 1.16675 0.86830 0.84516 0.78509 0.79793 1.20270 1.21263 1.18871 1.75129 1.11335 1.13055 1.12634 1.78339 1.14586 0.94481 1.18090 1.20216 0.91286 0.97807 1.06415 0.92661 0.92600 0.88238 0.85556 0.85519 0.84964 0.88499 0.89175 0.91981 0.90719 0.90362 0.85307 0.86062 0.80023 0.94401 0.95134 0.92734 0.85419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.81 101.05 0.99 1.13 16 2 O -0.32 -2.79 10.50 -19.44 -0.20 -2.99 16 3 C 0.12 1.12 6.69 -39.22 -0.26 0.86 16 4 C -0.20 -1.85 9.04 -39.43 -0.36 -2.21 16 5 C -0.08 -0.81 10.04 -39.60 -0.40 -1.21 16 6 C -0.13 -1.40 9.70 -39.56 -0.38 -1.79 16 7 C -0.07 -0.69 5.46 -104.65 -0.57 -1.26 16 8 C 0.16 1.25 5.57 -5.19 -0.03 1.22 16 9 N -0.61 -4.92 2.86 -182.96 -0.52 -5.44 16 10 C 0.07 0.29 10.29 59.84 0.62 0.90 16 11 C 0.50 5.97 7.69 -10.98 -0.08 5.89 16 12 O -0.50 -8.28 14.78 5.56 0.08 -8.19 16 13 C 0.11 1.12 5.49 -5.19 -0.03 1.09 16 14 N -0.30 -5.13 3.20 -62.44 -0.20 -5.33 16 15 C -0.08 -1.50 11.49 -17.05 -0.20 -1.70 16 16 C 0.04 0.96 6.44 -82.78 -0.53 0.43 16 17 C 0.06 1.49 4.62 -29.04 -0.13 1.35 16 18 C -0.50 -15.02 9.64 -34.44 -0.33 -15.35 16 19 H 0.08 2.53 7.98 -52.49 -0.42 2.11 16 20 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 21 N -0.90 -28.44 13.96 55.43 0.77 -27.67 16 22 Si 0.88 21.65 27.47 -169.99 -4.67 16.99 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 25 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 26 N -0.25 -6.37 12.40 33.29 0.41 -5.96 16 27 N -0.08 -1.66 12.13 60.35 0.73 -0.93 16 28 C -0.14 -1.21 9.64 -39.44 -0.38 -1.59 16 29 H 0.05 0.24 7.67 -51.93 -0.40 -0.16 16 30 H 0.06 0.26 7.65 -51.93 -0.40 -0.13 16 31 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.13 0.89 6.30 -52.49 -0.33 0.56 16 33 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.13 1.67 7.57 -52.49 -0.40 1.27 16 35 H 0.10 0.91 7.36 -51.93 -0.38 0.52 16 36 H 0.09 0.44 7.84 -51.93 -0.41 0.04 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 38 H 0.07 0.17 6.44 -51.93 -0.33 -0.17 16 39 H 0.08 0.17 7.89 -51.93 -0.41 -0.24 16 40 H 0.13 0.78 7.33 -51.93 -0.38 0.40 16 41 H 0.12 1.01 8.11 -51.93 -0.42 0.59 16 42 H 0.18 2.39 8.06 -52.49 -0.42 1.97 16 43 H 0.04 0.96 7.20 -51.93 -0.37 0.59 16 44 H 0.03 0.69 7.55 -51.93 -0.39 0.30 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.38 16 46 H 0.13 0.87 8.06 -52.48 -0.42 0.45 16 LS Contribution 390.78 15.07 5.89 5.89 Total: -1.00 -40.63 390.78 -6.21 -46.84 By element: Atomic # 1 Polarization: 3.46 SS G_CDS: -6.32 Total: -2.86 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -2.18 Total: -10.34 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 1.20 Total: -45.33 kcal Atomic # 8 Polarization: -11.06 SS G_CDS: -0.12 Total: -11.18 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -40.63 -6.21 -46.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603180278.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.547 kcal (2) G-P(sol) polarization free energy of solvation -40.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds